Wall clock time and date at job start Mon Mar 30 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47082 * 270.00624 * 3 2 1 5 5 H 1.48498 * 109.46895 * 30.00515 * 3 2 1 6 6 H 1.48497 * 109.46859 * 149.99986 * 3 2 1 7 7 C 1.37883 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99620 * 186.61561 * 7 2 1 9 9 C 1.50695 * 119.99637 * 6.60805 * 7 2 1 10 10 C 1.52998 * 115.55142 * 274.00601 * 9 7 2 11 11 O 1.45200 * 109.47204 * 274.81615 * 10 9 7 12 12 C 1.34234 * 116.99849 * 182.80560 * 11 10 9 13 13 O 1.20829 * 119.99721 * 5.41604 * 12 11 10 14 14 C 1.50700 * 119.99968 * 185.41223 * 12 11 10 15 15 H 1.08998 * 108.88990 * 337.16918 * 14 12 11 16 16 C 1.54194 * 108.97940 * 218.40291 * 14 12 11 17 17 C 1.50620 * 109.06448 * 161.81932 * 16 14 12 18 18 C 1.53825 * 112.46148 * 90.33504 * 17 16 14 19 19 O 1.43993 * 113.40780 * 317.88455 * 18 17 16 20 20 C 1.40317 * 116.58676 * 317.89684 * 19 18 17 21 21 C 1.46290 * 108.97116 * 95.92455 * 14 12 11 22 22 C 1.53001 * 117.51947 * 59.71614 * 9 7 2 23 23 C 1.53004 * 60.00193 * 107.47541 * 22 9 7 24 24 H 0.96999 * 120.00025 * 5.02000 * 1 2 3 25 25 H 1.08998 * 109.46813 * 154.81926 * 10 9 7 26 26 H 1.08999 * 109.47069 * 34.82427 * 10 9 7 27 27 H 1.08995 * 109.54166 * 281.70422 * 16 14 12 28 28 H 1.09011 * 109.53657 * 41.86356 * 16 14 12 29 29 H 1.09006 * 108.88399 * 211.09949 * 17 16 14 30 30 H 1.08992 * 108.88869 * 329.66430 * 17 16 14 31 31 H 1.09000 * 108.69408 * 78.90189 * 18 17 16 32 32 H 1.09005 * 108.69185 * 196.86993 * 18 17 16 33 33 H 1.09003 * 109.59979 * 335.26676 * 20 19 18 34 34 H 1.09002 * 109.59471 * 214.80452 * 20 19 18 35 35 H 1.09007 * 108.93535 * 61.37017 * 21 14 12 36 36 H 1.08993 * 108.93856 * 302.76103 * 21 14 12 37 37 H 1.09001 * 117.50079 * 214.96488 * 22 9 7 38 38 H 1.09008 * 117.49639 * 359.97438 * 22 9 7 39 39 H 1.08997 * 117.49683 * 252.51055 * 23 22 9 40 40 H 1.08999 * 117.49716 * 107.48858 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1972 0.1072 9 6 1.2584 -2.4947 -0.1513 10 6 0.7113 -3.0957 1.1449 11 8 1.7466 -3.8858 1.7870 12 6 1.4089 -4.5326 2.9137 13 8 0.2628 -4.5219 3.2960 14 6 2.4593 -5.2721 3.7016 15 1 3.2899 -5.5168 3.0396 16 6 1.8498 -6.5797 4.2460 17 6 2.9630 -7.5169 4.6346 18 6 3.3932 -7.3425 6.1011 19 8 3.4795 -5.9651 6.5120 20 6 4.0640 -5.0732 5.6000 21 6 2.9460 -4.4059 4.7754 22 6 0.4346 -2.6936 -1.4252 23 6 1.7416 -3.4651 -1.2311 24 1 -0.4850 0.8368 -0.0735 25 1 -0.1434 -3.7328 0.9176 26 1 0.3988 -2.2937 1.8137 27 1 1.2365 -6.3599 5.1198 28 1 1.2337 -7.0432 3.4754 29 1 2.6284 -8.5435 4.4849 30 1 3.8228 -7.3293 3.9916 31 1 2.6724 -7.8532 6.7397 32 1 4.3687 -7.8095 6.2370 33 1 4.7340 -5.6175 4.9345 34 1 4.6233 -4.3106 6.1419 35 1 2.1151 -4.1626 5.4377 36 1 3.3303 -3.4839 4.3393 37 1 -0.4973 -3.2525 -1.3398 38 1 0.4318 -1.8833 -2.1543 39 1 2.5986 -3.1626 -1.8327 40 1 1.6694 -4.5316 -1.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786431960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:33 Heat of formation + Delta-G solvation = -122.061052 kcal Electronic energy + Delta-G solvation = -21037.453622 eV Core-core repulsion = 17817.738316 eV Total energy + Delta-G solvation = -3219.715306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42423 -38.96830 -36.87311 -35.32461 -34.74639 -32.75068 -31.98776 -27.85707 -26.75554 -26.00251 -25.15840 -22.11380 -21.16708 -20.84812 -19.76331 -19.24455 -17.56480 -16.74212 -16.39723 -16.12703 -15.72501 -15.26796 -15.07940 -14.61544 -14.04636 -13.85852 -13.64227 -13.13651 -13.05410 -12.42598 -12.28662 -12.03527 -11.64696 -11.59070 -11.42175 -11.04257 -10.89058 -10.84284 -10.76238 -10.58860 -10.56001 -10.29526 -10.01370 -9.89282 -9.66596 -9.44507 -8.79395 -8.49202 -8.25215 -6.10325 -4.17151 2.71589 3.24615 3.29612 3.34402 3.37035 3.68268 4.36615 4.41808 4.64084 4.78990 4.81315 4.90502 5.09815 5.19214 5.26994 5.30823 5.37816 5.44995 5.50484 5.66014 5.71743 5.80959 5.92327 5.97654 5.98247 6.15505 6.23725 6.26101 6.33637 6.53703 6.64647 6.72272 7.01945 7.21954 7.27371 7.36248 7.46218 7.82421 8.34909 8.40515 8.85850 9.49673 10.98789 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.004599 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.078115 B = 6087.065055 C = 6666.611359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.494 4.494 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.114 3.886 11 O -0.346 6.346 12 C 0.455 3.545 13 O -0.519 6.519 14 C -0.074 4.074 15 H 0.097 0.903 16 C -0.102 4.102 17 C -0.154 4.154 18 C 0.063 3.937 19 O -0.384 6.384 20 C 0.074 3.926 21 C -0.150 4.150 22 C -0.146 4.146 23 C -0.199 4.199 24 H 0.262 0.738 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -13.018 8.401 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.041 3.959 11 O -0.261 6.261 12 C 0.298 3.702 13 O -0.409 6.409 14 C -0.093 4.093 15 H 0.115 0.885 16 C -0.140 4.140 17 C -0.192 4.192 18 C -0.014 4.014 19 O -0.303 6.303 20 C -0.003 4.003 21 C -0.188 4.188 22 C -0.184 4.184 23 C -0.237 4.237 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.409 -12.803 8.698 16.753 hybrid contribution 0.197 0.936 -0.477 1.069 sum 6.606 -11.868 8.221 15.877 Atomic orbital electron populations 1.70017 1.05910 1.27107 1.48519 1.25022 0.94852 0.99103 0.94413 0.86593 0.79983 0.83311 0.78222 1.20521 1.21195 1.19699 1.20452 0.93073 0.88502 1.51079 0.91863 1.18820 0.99077 0.94069 0.84479 1.23065 0.86444 0.91271 0.95081 1.86539 1.45457 1.57883 1.36244 1.23614 0.89058 0.77397 0.80133 1.90611 1.21785 1.59889 1.68606 1.20078 0.96885 0.95707 0.96664 0.88529 1.21217 0.97639 0.92963 1.02139 1.21947 0.99409 1.00786 0.97048 1.22957 1.00627 0.82616 0.95175 1.87474 1.81977 1.17867 1.42973 1.22280 0.93680 0.92298 0.92013 1.21128 1.00889 0.99430 0.97307 1.22567 0.92393 1.01190 1.02208 1.22906 0.98372 0.95778 1.06610 0.92827 0.94006 0.90701 0.90037 0.91034 0.90246 0.91316 0.89518 0.93177 0.92632 0.89132 0.90105 0.89817 0.91687 0.89478 0.90098 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 12.89 55.43 0.71 -24.09 16 2 C 0.07 1.89 5.38 -17.82 -0.10 1.80 16 3 Si 0.89 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.49 -13.44 8.80 -34.44 -0.30 -13.74 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 0.90 1.63 -155.66 -0.25 0.65 16 10 C 0.11 2.76 5.47 37.16 0.20 2.96 16 11 O -0.35 -7.47 10.14 -39.27 -0.40 -7.87 16 12 C 0.46 8.67 6.72 36.01 0.24 8.91 16 13 O -0.52 -11.26 16.20 -18.75 -0.30 -11.57 16 14 C -0.07 -1.03 2.16 -94.34 -0.20 -1.23 16 15 H 0.10 1.20 7.60 -51.93 -0.39 0.80 16 16 C -0.10 -1.22 4.53 -27.30 -0.12 -1.34 16 17 C -0.15 -1.35 5.32 -27.49 -0.15 -1.50 16 18 C 0.06 0.55 6.67 37.59 0.25 0.80 16 19 O -0.38 -4.38 10.17 -33.68 -0.34 -4.72 16 20 C 0.07 0.77 6.38 37.74 0.24 1.01 16 21 C -0.15 -1.94 4.64 -29.34 -0.14 -2.08 16 22 C -0.15 -3.42 9.34 -26.73 -0.25 -3.67 16 23 C -0.20 -4.37 9.87 -26.73 -0.26 -4.64 16 24 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 25 H 0.04 0.99 7.78 -51.93 -0.40 0.58 16 26 H 0.07 1.99 8.08 -51.93 -0.42 1.57 16 27 H 0.08 1.06 7.82 -51.93 -0.41 0.66 16 28 H 0.07 0.88 8.01 -51.92 -0.42 0.47 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.57 6.83 -51.93 -0.35 0.21 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.49 6.98 -51.93 -0.36 0.13 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.16 8.13 -51.92 -0.42 0.74 16 36 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 37 H 0.06 1.43 8.05 -51.93 -0.42 1.01 16 38 H 0.09 2.13 8.14 -51.92 -0.42 1.71 16 39 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -30.41 327.73 -7.78 -38.19 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.52 Total: 1.30 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.84 Total: -12.06 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.71 Total: -24.09 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -1.04 Total: -24.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.41 -7.78 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786431960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.874 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds