Wall clock time and date at job start Mon Mar 30 2020 07:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47082 * 270.00624 * 3 2 1 5 5 H 1.48498 * 109.46895 * 30.00515 * 3 2 1 6 6 H 1.48497 * 109.46859 * 149.99986 * 3 2 1 7 7 C 1.37883 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99620 * 186.61561 * 7 2 1 9 9 C 1.50695 * 119.99637 * 6.60805 * 7 2 1 10 10 C 1.52998 * 115.55142 * 274.00601 * 9 7 2 11 11 O 1.45200 * 109.47204 * 274.81615 * 10 9 7 12 12 C 1.34234 * 116.99849 * 182.80560 * 11 10 9 13 13 O 1.20829 * 119.99721 * 5.41604 * 12 11 10 14 14 C 1.50700 * 119.99968 * 185.41223 * 12 11 10 15 15 H 1.08998 * 108.88990 * 337.16918 * 14 12 11 16 16 C 1.54194 * 108.97940 * 218.40291 * 14 12 11 17 17 C 1.50620 * 109.06448 * 161.81932 * 16 14 12 18 18 C 1.53825 * 112.46148 * 90.33504 * 17 16 14 19 19 O 1.43993 * 113.40780 * 317.88455 * 18 17 16 20 20 C 1.40317 * 116.58676 * 317.89684 * 19 18 17 21 21 C 1.46290 * 108.97116 * 95.92455 * 14 12 11 22 22 C 1.53001 * 117.51947 * 59.71614 * 9 7 2 23 23 C 1.53004 * 60.00193 * 107.47541 * 22 9 7 24 24 H 0.96999 * 120.00025 * 5.02000 * 1 2 3 25 25 H 1.08998 * 109.46813 * 154.81926 * 10 9 7 26 26 H 1.08999 * 109.47069 * 34.82427 * 10 9 7 27 27 H 1.08995 * 109.54166 * 281.70422 * 16 14 12 28 28 H 1.09011 * 109.53657 * 41.86356 * 16 14 12 29 29 H 1.09006 * 108.88399 * 211.09949 * 17 16 14 30 30 H 1.08992 * 108.88869 * 329.66430 * 17 16 14 31 31 H 1.09000 * 108.69408 * 78.90189 * 18 17 16 32 32 H 1.09005 * 108.69185 * 196.86993 * 18 17 16 33 33 H 1.09003 * 109.59979 * 335.26676 * 20 19 18 34 34 H 1.09002 * 109.59471 * 214.80452 * 20 19 18 35 35 H 1.09007 * 108.93535 * 61.37017 * 21 14 12 36 36 H 1.08993 * 108.93856 * 302.76103 * 21 14 12 37 37 H 1.09001 * 117.50079 * 214.96488 * 22 9 7 38 38 H 1.09008 * 117.49639 * 359.97438 * 22 9 7 39 39 H 1.08997 * 117.49683 * 252.51055 * 23 22 9 40 40 H 1.08999 * 117.49716 * 107.48858 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1972 0.1072 9 6 1.2584 -2.4947 -0.1513 10 6 0.7113 -3.0957 1.1449 11 8 1.7466 -3.8858 1.7870 12 6 1.4089 -4.5326 2.9137 13 8 0.2628 -4.5219 3.2960 14 6 2.4593 -5.2721 3.7016 15 1 3.2899 -5.5168 3.0396 16 6 1.8498 -6.5797 4.2460 17 6 2.9630 -7.5169 4.6346 18 6 3.3932 -7.3425 6.1011 19 8 3.4795 -5.9651 6.5120 20 6 4.0640 -5.0732 5.6000 21 6 2.9460 -4.4059 4.7754 22 6 0.4346 -2.6936 -1.4252 23 6 1.7416 -3.4651 -1.2311 24 1 -0.4850 0.8368 -0.0735 25 1 -0.1434 -3.7328 0.9176 26 1 0.3988 -2.2937 1.8137 27 1 1.2365 -6.3599 5.1198 28 1 1.2337 -7.0432 3.4754 29 1 2.6284 -8.5435 4.4849 30 1 3.8228 -7.3293 3.9916 31 1 2.6724 -7.8532 6.7397 32 1 4.3687 -7.8095 6.2370 33 1 4.7340 -5.6175 4.9345 34 1 4.6233 -4.3106 6.1419 35 1 2.1151 -4.1626 5.4377 36 1 3.3303 -3.4839 4.3393 37 1 -0.4973 -3.2525 -1.3398 38 1 0.4318 -1.8833 -2.1543 39 1 2.5986 -3.1626 -1.8327 40 1 1.6694 -4.5316 -1.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786431960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:32 Heat of formation + Delta-G solvation = -138.860408 kcal Electronic energy + Delta-G solvation = -21038.182097 eV Core-core repulsion = 17817.738316 eV Total energy + Delta-G solvation = -3220.443781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83453 -40.08029 -38.63406 -37.01583 -35.87343 -34.05581 -33.57378 -29.28856 -28.12308 -27.36100 -26.74420 -23.44274 -22.91786 -21.67913 -21.20222 -21.01157 -18.92297 -18.45133 -17.60369 -17.41168 -17.25576 -16.65929 -16.41514 -16.06546 -15.61026 -15.22585 -14.77229 -14.58547 -14.04116 -13.91970 -13.81176 -13.54035 -13.25861 -13.00346 -12.79562 -12.56202 -12.42834 -12.35564 -12.11809 -11.87395 -11.77052 -11.71803 -11.61163 -11.36862 -11.27065 -10.75927 -10.52792 -10.41971 -10.12840 -8.17483 -6.30627 1.16398 1.40969 1.42402 1.52205 1.75254 2.40319 2.94965 3.11261 3.34478 3.47345 3.69361 3.82053 3.92972 4.07245 4.09200 4.23224 4.34191 4.37190 4.45404 4.48258 4.50795 4.59993 4.63478 4.74849 4.80626 4.93258 4.94481 5.01124 5.07085 5.11077 5.15252 5.18496 5.31643 5.46632 5.55382 5.65405 5.70969 6.31574 6.48541 6.75547 6.78170 7.39476 8.91521 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.004599 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.078115 B = 6087.065055 C = 6666.611359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.002 3.998 10 C 0.129 3.871 11 O -0.350 6.350 12 C 0.450 3.550 13 O -0.551 6.551 14 C -0.065 4.065 15 H 0.120 0.880 16 C -0.098 4.098 17 C -0.148 4.148 18 C 0.056 3.944 19 O -0.405 6.405 20 C 0.081 3.919 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.170 4.170 24 H 0.262 0.738 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.131 -14.451 8.586 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.002 3.998 10 C 0.055 3.945 11 O -0.266 6.266 12 C 0.295 3.705 13 O -0.442 6.442 14 C -0.084 4.084 15 H 0.138 0.862 16 C -0.136 4.136 17 C -0.185 4.185 18 C -0.020 4.020 19 O -0.324 6.324 20 C 0.004 3.996 21 C -0.187 4.187 22 C -0.185 4.185 23 C -0.207 4.207 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.555 -14.256 8.887 18.852 hybrid contribution -0.501 1.330 -0.486 1.502 sum 8.054 -12.926 8.401 17.393 Atomic orbital electron populations 1.70123 1.07241 1.27821 1.49479 1.25756 0.95594 1.02271 0.94064 0.85614 0.78785 0.79202 0.78498 1.19633 1.21240 1.19081 1.20713 0.93009 0.89893 1.51085 0.92448 1.18912 1.00785 0.94761 0.85383 1.22597 0.87037 0.90496 0.94353 1.86550 1.44630 1.57951 1.37481 1.24824 0.89965 0.76525 0.79219 1.90592 1.23615 1.60979 1.69019 1.20311 0.95783 0.95889 0.96427 0.86188 1.21217 0.98694 0.92534 1.01148 1.21920 0.98435 1.00889 0.97304 1.23164 1.02164 0.81490 0.95150 1.87458 1.82203 1.19202 1.43559 1.22285 0.92533 0.92714 0.92043 1.21172 1.01239 0.99434 0.96898 1.22503 0.93706 1.01312 1.01000 1.22916 0.97490 0.96342 1.03942 0.92877 0.94069 0.94389 0.91698 0.91623 0.88059 0.89996 0.88906 0.90887 0.90337 0.87870 0.92431 0.90644 0.90707 0.91049 0.89326 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.33 12.89 21.45 0.28 -52.05 16 2 C 0.02 1.30 5.38 84.66 0.46 1.76 16 3 Si 0.95 43.11 29.55 68.60 2.03 45.14 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.51 -27.99 8.80 25.60 0.23 -27.76 16 8 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 9 C 0.00 0.10 1.63 -52.93 -0.09 0.02 16 10 C 0.13 6.38 5.47 71.98 0.39 6.78 16 11 O -0.35 -15.24 10.14 -51.46 -0.52 -15.76 16 12 C 0.45 17.30 6.72 71.24 0.48 17.78 16 13 O -0.55 -24.66 16.20 21.95 0.36 -24.30 16 14 C -0.07 -1.73 2.16 -13.20 -0.03 -1.76 16 15 H 0.12 2.65 7.60 -2.39 -0.02 2.63 16 16 C -0.10 -2.21 4.53 30.23 0.14 -2.07 16 17 C -0.15 -2.10 5.32 30.10 0.16 -1.94 16 18 C 0.06 0.80 6.67 72.26 0.48 1.28 16 19 O -0.41 -8.34 10.17 -143.41 -1.46 -9.80 16 20 C 0.08 1.49 6.38 72.36 0.46 1.95 16 21 C -0.15 -3.77 4.64 28.91 0.13 -3.64 16 22 C -0.15 -6.90 9.34 30.60 0.29 -6.62 16 23 C -0.17 -7.20 9.87 30.60 0.30 -6.90 16 24 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 25 H 0.04 1.99 7.78 -2.39 -0.02 1.98 16 26 H 0.04 2.12 8.08 -2.39 -0.02 2.10 16 27 H 0.06 1.67 7.82 -2.39 -0.02 1.65 16 28 H 0.07 1.55 8.01 -2.38 -0.02 1.53 16 29 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 0.99 6.83 -2.39 -0.02 0.97 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 1.09 6.98 -2.39 -0.02 1.07 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.70 8.13 -2.38 -0.02 1.68 16 36 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 37 H 0.07 3.29 8.05 -2.39 -0.02 3.27 16 38 H 0.07 3.52 8.14 -2.38 -0.02 3.51 16 39 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 40 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -66.63 327.73 5.09 -61.55 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.01 Total: 16.35 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 3.40 Total: -21.13 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.28 Total: -52.05 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -1.63 Total: -49.86 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.63 5.09 -61.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786431960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.313 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds