Wall clock time and date at job start Mon Mar 30 2020 07:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46786 * 299.99694 * 3 2 1 6 6 H 1.48492 * 109.47232 * 60.00162 * 3 2 1 7 7 C 1.37883 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 164.05459 * 7 2 1 9 9 C 1.50700 * 119.99779 * 344.05967 * 7 2 1 10 10 C 1.52994 * 115.55381 * 324.62443 * 9 7 2 11 11 O 1.45201 * 109.46864 * 305.70726 * 10 9 7 12 12 C 1.34232 * 117.00094 * 182.68177 * 11 10 9 13 13 O 1.20826 * 119.99792 * 4.67774 * 12 11 10 14 14 C 1.50700 * 120.00200 * 184.68489 * 12 11 10 15 15 H 1.08998 * 108.75543 * 25.00969 * 14 12 11 16 16 C 1.50283 * 108.78719 * 143.35461 * 14 12 11 17 17 C 1.54268 * 108.48964 * 212.86747 * 16 14 12 18 18 C 1.45985 * 111.72748 * 281.95735 * 17 16 14 19 19 O 1.44229 * 112.09818 * 60.07659 * 18 17 16 20 20 C 1.39963 * 112.36784 * 277.40692 * 19 18 17 21 21 C 1.54353 * 112.57699 * 97.11828 * 20 19 18 22 22 C 1.53002 * 117.49357 * 110.29490 * 9 7 2 23 23 C 1.53004 * 117.49596 * 178.95261 * 9 7 2 24 24 H 0.97002 * 119.99885 * 5.04016 * 1 2 3 25 25 H 1.08998 * 109.47464 * 185.70681 * 10 9 7 26 26 H 1.08998 * 109.47138 * 65.69872 * 10 9 7 27 27 H 1.08995 * 109.63602 * 93.16420 * 16 14 12 28 28 H 1.09007 * 109.79891 * 332.66470 * 16 14 12 29 29 H 1.08998 * 109.02627 * 161.38537 * 17 16 14 30 30 H 1.08998 * 108.96975 * 42.50168 * 17 16 14 31 31 H 1.08996 * 108.96460 * 299.39597 * 18 17 16 32 32 H 1.08999 * 108.88652 * 180.69784 * 18 17 16 33 33 H 1.08998 * 108.86474 * 217.91966 * 20 19 18 34 34 H 1.09003 * 108.86476 * 336.32117 * 20 19 18 35 35 H 1.09004 * 109.08746 * 198.80818 * 21 20 19 36 36 H 1.09003 * 109.03026 * 79.79053 * 21 20 19 37 37 H 1.09010 * 117.49653 * 214.99842 * 22 9 7 38 38 H 1.08998 * 117.50217 * 0.02562 * 22 9 7 39 39 H 1.08999 * 117.50101 * 359.97438 * 23 9 7 40 40 H 1.08995 * 117.49844 * 144.99971 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0533 -1.2122 -0.2564 9 6 1.2944 -2.4739 0.3595 10 6 0.2176 -2.3507 1.4394 11 8 0.7876 -1.7319 2.6228 12 6 -0.0169 -1.6006 3.6893 13 8 -1.1321 -2.0650 3.6656 14 6 0.4709 -0.8740 4.9162 15 1 1.2534 -0.1748 4.6214 16 6 -0.6734 -0.0989 5.5065 17 6 -0.1143 1.1902 6.1433 18 6 0.5026 0.9287 7.4403 19 8 1.6019 0.0003 7.3410 20 6 1.1740 -1.3323 7.3273 21 6 1.0699 -1.9067 5.8984 22 6 1.0586 -3.4891 -0.7607 23 6 2.1082 -3.7689 0.3180 24 1 -0.4850 0.8368 -0.0738 25 1 -0.1581 -3.3420 1.6928 26 1 -0.6018 -1.7358 1.0669 27 1 -1.1677 -0.6998 6.2697 28 1 -1.3873 0.1589 4.7241 29 1 -0.9278 1.9037 6.2741 30 1 0.6317 1.6207 5.4752 31 1 -0.2491 0.5167 8.1134 32 1 0.8694 1.8687 7.8525 33 1 1.8798 -1.9350 7.8988 34 1 0.1954 -1.3931 7.8036 35 1 0.4347 -2.7923 5.9156 36 1 2.0654 -2.1890 5.5555 37 1 0.1363 -4.0692 -0.7283 38 1 1.4175 -3.2315 -1.7571 39 1 3.1570 -3.6953 0.0305 40 1 1.8764 -4.5330 1.0599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786431962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:36 Heat of formation + Delta-G solvation = -114.869715 kcal Electronic energy + Delta-G solvation = -21534.325644 eV Core-core repulsion = 18314.922178 eV Total energy + Delta-G solvation = -3219.403466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21880 -38.95893 -36.79523 -35.13880 -34.40635 -32.77051 -32.16203 -27.83869 -26.66161 -25.62931 -25.07708 -21.80688 -21.44844 -21.15263 -19.28805 -19.15096 -17.13406 -16.68280 -16.60005 -16.21140 -15.49249 -15.14622 -14.72895 -14.56437 -14.13677 -13.64013 -13.40601 -13.06244 -12.99796 -12.50939 -12.15351 -11.91125 -11.65475 -11.37279 -11.13831 -10.97616 -10.84037 -10.78924 -10.64720 -10.50170 -10.45606 -10.32574 -9.87304 -9.68469 -9.50222 -9.29634 -9.14073 -8.74372 -8.08949 -6.08268 -4.07301 2.93612 3.26341 3.35428 3.40632 3.53205 3.78476 4.36991 4.62750 4.78509 4.89771 4.95775 4.96739 5.08965 5.26498 5.33884 5.45902 5.47471 5.54381 5.65499 5.73376 5.84163 5.90784 6.03620 6.07844 6.09333 6.21054 6.24362 6.33620 6.46190 6.61941 6.65004 6.82179 6.98005 7.15348 7.26383 7.37809 7.55491 7.88869 8.34861 8.65438 8.86814 9.50932 10.95447 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.006407 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.349384 B = 4369.142489 C = 5130.634545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.484 4.484 8 H 0.063 0.937 9 C 0.048 3.952 10 C 0.113 3.887 11 O -0.325 6.325 12 C 0.457 3.543 13 O -0.531 6.531 14 C -0.077 4.077 15 H 0.103 0.897 16 C -0.105 4.105 17 C -0.157 4.157 18 C 0.060 3.940 19 O -0.369 6.369 20 C 0.065 3.935 21 C -0.136 4.136 22 C -0.192 4.192 23 C -0.209 4.209 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 0.249 13.722 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.521 4.521 8 H 0.081 0.919 9 C 0.047 3.953 10 C 0.041 3.959 11 O -0.239 6.239 12 C 0.300 3.700 13 O -0.422 6.422 14 C -0.096 4.096 15 H 0.121 0.879 16 C -0.143 4.143 17 C -0.194 4.194 18 C -0.016 4.016 19 O -0.288 6.288 20 C -0.013 4.013 21 C -0.174 4.174 22 C -0.230 4.230 23 C -0.246 4.246 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.494 0.284 13.716 13.728 hybrid contribution -0.023 0.606 -0.321 0.686 sum -0.517 0.890 13.395 13.434 Atomic orbital electron populations 1.69855 1.06196 1.26890 1.48812 1.24925 0.94680 0.99185 0.93917 0.86534 0.80506 0.83395 0.77615 1.19511 1.21165 1.20669 1.20425 0.95817 0.89348 1.46488 0.91856 1.18886 0.94599 0.89305 0.92480 1.22763 0.98055 0.94538 0.80593 1.86522 1.43248 1.72193 1.21943 1.23574 0.83733 0.77359 0.85285 1.90566 1.21436 1.46883 1.83306 1.20806 0.99826 0.97839 0.91147 0.87892 1.21229 0.96702 0.95364 1.00979 1.21231 1.01335 0.98350 0.98525 1.21583 0.89350 0.94016 0.96643 1.87798 1.31446 1.15220 1.94297 1.22281 0.99849 0.83942 0.95202 1.22590 1.02159 0.97711 0.94919 1.22964 0.98472 1.06181 0.95400 1.22957 0.96580 1.02523 1.02562 0.92785 0.95386 0.87381 0.91087 0.90334 0.90386 0.90449 0.92967 0.89470 0.89938 0.93039 0.90724 0.90187 0.91540 0.89759 0.90280 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 11.01 55.43 0.61 -24.04 16 2 C 0.08 2.07 5.13 -17.82 -0.09 1.98 16 3 Si 0.89 21.11 29.57 -169.99 -5.03 16.08 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.48 -13.27 8.75 -34.44 -0.30 -13.57 16 8 H 0.06 1.73 7.87 -52.49 -0.41 1.32 16 9 C 0.05 1.21 2.09 -155.66 -0.33 0.89 16 10 C 0.11 2.86 4.66 37.15 0.17 3.03 16 11 O -0.33 -7.88 9.90 -39.26 -0.39 -8.26 16 12 C 0.46 9.71 6.60 36.01 0.24 9.94 16 13 O -0.53 -12.21 15.95 -18.75 -0.30 -12.51 16 14 C -0.08 -1.26 2.27 -92.28 -0.21 -1.47 16 15 H 0.10 1.77 7.33 -51.93 -0.38 1.39 16 16 C -0.11 -1.50 4.72 -27.42 -0.13 -1.62 16 17 C -0.16 -1.82 5.52 -29.39 -0.16 -1.98 16 18 C 0.06 0.61 6.11 33.83 0.21 0.82 16 19 O -0.37 -4.63 10.35 -32.83 -0.34 -4.97 16 20 C 0.07 0.72 6.09 37.87 0.23 0.95 16 21 C -0.14 -1.84 5.62 -25.18 -0.14 -1.98 16 22 C -0.19 -4.38 9.96 -26.69 -0.27 -4.64 16 23 C -0.21 -4.61 9.92 -26.69 -0.26 -4.87 16 24 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 25 H 0.03 0.67 7.98 -51.93 -0.41 0.25 16 26 H 0.11 2.99 6.11 -51.93 -0.32 2.68 16 27 H 0.07 0.91 7.08 -51.93 -0.37 0.54 16 28 H 0.08 1.27 7.52 -51.93 -0.39 0.87 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 31 H 0.05 0.45 7.35 -51.93 -0.38 0.07 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.50 6.54 -51.93 -0.34 0.16 16 35 H 0.07 1.00 7.98 -51.93 -0.41 0.58 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 38 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -30.30 322.26 -7.96 -38.25 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.33 Total: 3.12 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.04 Total: -12.53 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.61 Total: -24.04 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.03 Total: -25.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.30 -7.96 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786431962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.615 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds