Wall clock time and date at job start Mon Mar 30 2020 07:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48501 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46786 * 299.99694 * 3 2 1 6 6 H 1.48492 * 109.47232 * 60.00162 * 3 2 1 7 7 C 1.37883 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 164.05459 * 7 2 1 9 9 C 1.50700 * 119.99779 * 344.05967 * 7 2 1 10 10 C 1.52994 * 115.55381 * 324.62443 * 9 7 2 11 11 O 1.45201 * 109.46864 * 305.70726 * 10 9 7 12 12 C 1.34232 * 117.00094 * 182.68177 * 11 10 9 13 13 O 1.20826 * 119.99792 * 4.67774 * 12 11 10 14 14 C 1.50700 * 120.00200 * 184.68489 * 12 11 10 15 15 H 1.08998 * 108.75543 * 25.00969 * 14 12 11 16 16 C 1.50283 * 108.78719 * 143.35461 * 14 12 11 17 17 C 1.54268 * 108.48964 * 212.86747 * 16 14 12 18 18 C 1.45985 * 111.72748 * 281.95735 * 17 16 14 19 19 O 1.44229 * 112.09818 * 60.07659 * 18 17 16 20 20 C 1.39963 * 112.36784 * 277.40692 * 19 18 17 21 21 C 1.54353 * 112.57699 * 97.11828 * 20 19 18 22 22 C 1.53002 * 117.49357 * 110.29490 * 9 7 2 23 23 C 1.53004 * 117.49596 * 178.95261 * 9 7 2 24 24 H 0.97002 * 119.99885 * 5.04016 * 1 2 3 25 25 H 1.08998 * 109.47464 * 185.70681 * 10 9 7 26 26 H 1.08998 * 109.47138 * 65.69872 * 10 9 7 27 27 H 1.08995 * 109.63602 * 93.16420 * 16 14 12 28 28 H 1.09007 * 109.79891 * 332.66470 * 16 14 12 29 29 H 1.08998 * 109.02627 * 161.38537 * 17 16 14 30 30 H 1.08998 * 108.96975 * 42.50168 * 17 16 14 31 31 H 1.08996 * 108.96460 * 299.39597 * 18 17 16 32 32 H 1.08999 * 108.88652 * 180.69784 * 18 17 16 33 33 H 1.08998 * 108.86474 * 217.91966 * 20 19 18 34 34 H 1.09003 * 108.86476 * 336.32117 * 20 19 18 35 35 H 1.09004 * 109.08746 * 198.80818 * 21 20 19 36 36 H 1.09003 * 109.03026 * 79.79053 * 21 20 19 37 37 H 1.09010 * 117.49653 * 214.99842 * 22 9 7 38 38 H 1.08998 * 117.50217 * 0.02562 * 22 9 7 39 39 H 1.08999 * 117.50101 * 359.97438 * 23 9 7 40 40 H 1.08995 * 117.49844 * 144.99971 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0533 -1.2122 -0.2564 9 6 1.2944 -2.4739 0.3595 10 6 0.2176 -2.3507 1.4394 11 8 0.7876 -1.7319 2.6228 12 6 -0.0169 -1.6006 3.6893 13 8 -1.1321 -2.0650 3.6656 14 6 0.4709 -0.8740 4.9162 15 1 1.2534 -0.1748 4.6214 16 6 -0.6734 -0.0989 5.5065 17 6 -0.1143 1.1902 6.1433 18 6 0.5026 0.9287 7.4403 19 8 1.6019 0.0003 7.3410 20 6 1.1740 -1.3323 7.3273 21 6 1.0699 -1.9067 5.8984 22 6 1.0586 -3.4891 -0.7607 23 6 2.1082 -3.7689 0.3180 24 1 -0.4850 0.8368 -0.0738 25 1 -0.1581 -3.3420 1.6928 26 1 -0.6018 -1.7358 1.0669 27 1 -1.1677 -0.6998 6.2697 28 1 -1.3873 0.1589 4.7241 29 1 -0.9278 1.9037 6.2741 30 1 0.6317 1.6207 5.4752 31 1 -0.2491 0.5167 8.1134 32 1 0.8694 1.8687 7.8525 33 1 1.8798 -1.9350 7.8988 34 1 0.1954 -1.3931 7.8036 35 1 0.4347 -2.7923 5.9156 36 1 2.0654 -2.1890 5.5555 37 1 0.1363 -4.0692 -0.7283 38 1 1.4175 -3.2315 -1.7571 39 1 3.1570 -3.6953 0.0305 40 1 1.8764 -4.5330 1.0599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786431962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:35 Heat of formation + Delta-G solvation = -131.462707 kcal Electronic energy + Delta-G solvation = -21535.045170 eV Core-core repulsion = 18314.922178 eV Total energy + Delta-G solvation = -3220.122992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69925 -40.19595 -38.61482 -36.91547 -35.63830 -34.22198 -33.74356 -29.18384 -28.19531 -27.43835 -26.46849 -23.19353 -22.89054 -22.42789 -21.15768 -20.66508 -18.70893 -18.54408 -17.69496 -17.48492 -17.08531 -16.69214 -16.36705 -15.92215 -15.59950 -15.11532 -14.93499 -14.34885 -14.03464 -13.90500 -13.81794 -13.55498 -13.37755 -12.87331 -12.85046 -12.59081 -12.32875 -12.25202 -12.15773 -11.93180 -11.68858 -11.55237 -11.44607 -11.40871 -11.15428 -11.10790 -10.67732 -10.56386 -10.07273 -8.14046 -6.19169 1.24486 1.37086 1.41598 1.52308 1.91071 2.39367 2.96768 2.97893 3.47778 3.56349 3.66804 3.77506 4.00983 4.04916 4.15357 4.17907 4.31813 4.41066 4.45736 4.53141 4.54085 4.57311 4.70938 4.80020 4.85523 4.87984 4.93228 4.97660 4.98855 5.09508 5.15232 5.16988 5.26184 5.34854 5.48815 5.76378 5.78904 6.30913 6.33590 6.74728 6.91402 7.41111 8.88577 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.006407 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.349384 B = 4369.142489 C = 5130.634545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.033 3.967 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.007 3.993 10 C 0.124 3.876 11 O -0.343 6.343 12 C 0.450 3.550 13 O -0.553 6.553 14 C -0.070 4.070 15 H 0.091 0.909 16 C -0.105 4.105 17 C -0.150 4.150 18 C 0.055 3.945 19 O -0.389 6.389 20 C 0.068 3.932 21 C -0.134 4.134 22 C -0.185 4.185 23 C -0.185 4.185 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 0.430 15.601 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.167 4.167 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.050 3.950 11 O -0.258 6.258 12 C 0.295 3.705 13 O -0.445 6.445 14 C -0.089 4.089 15 H 0.109 0.891 16 C -0.142 4.142 17 C -0.187 4.187 18 C -0.020 4.020 19 O -0.307 6.307 20 C -0.010 4.010 21 C -0.172 4.172 22 C -0.223 4.223 23 C -0.222 4.222 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.120 0.461 15.597 15.604 hybrid contribution -0.242 0.506 -0.927 1.083 sum -0.121 0.967 14.670 14.702 Atomic orbital electron populations 1.69982 1.07316 1.27349 1.49729 1.25587 0.95365 1.02013 0.93759 0.85673 0.79516 0.79873 0.77688 1.18980 1.20503 1.20492 1.20649 0.95631 0.90792 1.46741 0.92546 1.19036 0.96273 0.90050 0.94032 1.22465 0.97262 0.94049 0.81189 1.86535 1.44213 1.72574 1.22441 1.24636 0.83315 0.76869 0.85644 1.90537 1.22297 1.47998 1.83671 1.21019 1.00299 0.97936 0.89652 0.89116 1.21264 0.95490 0.96773 1.00696 1.21214 1.01611 0.97056 0.98833 1.21760 0.89504 0.94777 0.95999 1.87790 1.32805 1.15953 1.94182 1.22357 1.01693 0.83712 0.93234 1.22663 1.01492 0.97014 0.95989 1.22962 0.99454 1.04919 0.94957 1.22975 0.96643 1.00548 1.02066 0.92941 0.94795 0.90523 0.89260 0.92984 0.88171 0.92294 0.90569 0.87554 0.87837 0.91033 0.90577 0.90701 0.90161 0.89931 0.89542 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.98 11.01 21.45 0.24 -51.75 16 2 C 0.03 1.84 5.13 84.66 0.43 2.27 16 3 Si 0.95 43.68 29.57 68.60 2.03 45.71 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.50 -27.80 8.75 25.60 0.22 -27.57 16 8 H 0.06 3.11 7.87 -2.91 -0.02 3.09 16 9 C 0.01 0.33 2.09 -52.93 -0.11 0.22 16 10 C 0.12 6.37 4.66 71.98 0.34 6.71 16 11 O -0.34 -17.04 9.90 -51.44 -0.51 -17.55 16 12 C 0.45 19.54 6.60 71.24 0.47 20.01 16 13 O -0.55 -26.01 15.95 21.96 0.35 -25.66 16 14 C -0.07 -2.28 2.27 -11.87 -0.03 -2.31 16 15 H 0.09 3.17 7.33 -2.39 -0.02 3.15 16 16 C -0.10 -2.89 4.72 30.15 0.14 -2.75 16 17 C -0.15 -3.19 5.52 28.87 0.16 -3.03 16 18 C 0.06 0.95 6.11 69.83 0.43 1.38 16 19 O -0.39 -8.70 10.35 -140.38 -1.45 -10.15 16 20 C 0.07 1.30 6.09 72.44 0.44 1.74 16 21 C -0.13 -3.45 5.62 31.60 0.18 -3.27 16 22 C -0.19 -8.31 9.96 30.62 0.30 -8.00 16 23 C -0.19 -7.93 9.92 30.62 0.30 -7.63 16 24 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 25 H 0.03 1.65 7.98 -2.39 -0.02 1.63 16 26 H 0.08 4.42 6.11 -2.39 -0.01 4.40 16 27 H 0.09 2.11 7.08 -2.39 -0.02 2.09 16 28 H 0.05 1.70 7.52 -2.38 -0.02 1.68 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.47 7.53 -2.39 -0.02 1.46 16 31 H 0.08 0.98 7.35 -2.39 -0.02 0.97 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.10 6.54 -2.39 -0.02 1.09 16 35 H 0.08 1.94 7.98 -2.38 -0.02 1.92 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 38 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -66.02 322.26 4.95 -61.07 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.02 Total: 20.58 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 3.28 Total: -22.24 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.24 Total: -51.75 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -1.61 Total: -53.37 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.02 4.95 -61.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786431962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.393 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds