Wall clock time and date at job start Mon Mar 30 2020 07:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 9 9 H 1.08992 * 109.47554 * 299.99692 * 8 2 1 10 10 C 1.50701 * 109.46990 * 60.00074 * 8 2 1 11 11 O 1.20826 * 119.99842 * 0.02562 * 10 8 2 12 12 O 1.34228 * 120.00108 * 179.97438 * 10 8 2 13 13 C 1.45199 * 117.00436 * 179.97438 * 12 10 8 14 14 C 1.52993 * 109.47482 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47287 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47354 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99650 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00572 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99599 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00584 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46871 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47183 * 119.99642 * 20 18 16 23 23 H 1.48493 * 109.47170 * 239.99901 * 20 18 16 24 24 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 25 25 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 26 26 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 29 29 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 33 33 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 34 34 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47045 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 38 38 H 1.09006 * 109.46924 * 300.00276 * 13 12 10 39 39 H 1.09001 * 109.46755 * 59.99811 * 13 12 10 40 40 H 1.09006 * 109.47020 * 299.99915 * 14 13 12 41 41 H 1.09001 * 109.47508 * 59.99424 * 14 13 12 42 42 H 1.09003 * 109.47281 * 299.99470 * 15 14 13 43 43 H 1.08998 * 109.47040 * 60.00052 * 15 14 13 44 44 H 0.97000 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2489 8 6 2.0400 -0.7212 -1.2492 9 1 1.6768 -1.7489 -1.2492 10 6 1.5377 -0.0108 -2.4797 11 8 0.8435 0.9718 -2.3688 12 8 1.8624 -0.4691 -3.6988 13 6 1.3428 0.2647 -4.8389 14 6 1.8145 -0.4021 -6.1326 15 6 1.2664 0.3708 -7.3339 16 6 1.7315 -0.2856 -8.6082 17 1 2.3559 -1.1658 -8.5655 18 6 1.3608 0.2380 -9.8286 19 7 0.6008 1.3101 -9.8806 20 14 1.9378 -0.5752 -11.4082 21 1 2.7757 -1.7564 -11.0793 22 1 0.7593 -1.0090 -12.2007 23 1 2.7376 0.3934 -12.2000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 -0.2074 2.1393 31 1 1.6767 -1.7489 1.2493 32 1 3.9330 0.3071 1.2498 33 1 3.9333 -1.2348 2.1394 34 1 3.7176 -2.4694 0.0002 35 1 5.1705 -1.4408 0.0004 36 1 3.9339 -1.2341 -2.1388 37 1 3.9334 0.3075 -1.2486 38 1 0.2533 0.2632 -4.8060 39 1 1.7059 1.2920 -4.8058 40 1 2.9040 -0.4009 -6.1657 41 1 1.4512 -1.4292 -6.1654 42 1 0.1769 0.3692 -7.3007 43 1 1.6294 1.3980 -7.3013 44 1 0.3397 1.6783 -10.7392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789061803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:13 Heat of formation + Delta-G solvation = -129.328040 kcal Electronic energy + Delta-G solvation = -21097.755084 eV Core-core repulsion = 18013.557752 eV Total energy + Delta-G solvation = -3084.197332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06602 -38.85586 -36.37074 -34.01929 -33.23500 -31.90627 -31.27427 -27.59469 -27.26123 -26.58377 -24.02805 -23.03493 -21.46743 -20.74129 -20.29909 -18.57906 -17.37723 -16.54888 -16.28101 -15.93834 -15.16362 -14.87928 -14.56080 -14.46211 -14.17431 -13.65416 -13.36433 -13.21760 -12.72163 -12.42802 -12.17438 -12.05825 -11.85179 -11.76374 -11.66987 -11.39697 -11.30379 -11.09227 -10.96057 -10.88018 -10.63205 -10.58149 -10.37124 -10.29192 -10.23784 -9.79003 -9.70393 -9.41419 -9.14064 -8.39185 -6.03716 -4.06652 2.38560 2.94909 3.29923 3.37352 3.41765 4.29828 4.41670 4.43233 4.55080 4.83516 4.91267 5.03404 5.08782 5.13252 5.19838 5.29771 5.32344 5.43862 5.54757 5.59833 5.64964 5.66257 5.70641 5.79832 5.84962 5.85552 5.88479 5.94430 5.97703 6.02990 6.10696 6.17365 6.30588 6.41688 6.55097 6.63095 6.92091 7.02237 7.60605 7.71556 7.94738 8.02605 8.36226 8.99910 9.57720 11.07791 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.039291 B = 0.003218 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.465500 B = 8698.891517 C = 9124.856822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.045 4.045 3 C -0.159 4.159 4 C -0.107 4.107 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.070 4.070 9 H 0.104 0.896 10 C 0.461 3.539 11 O -0.504 6.504 12 O -0.358 6.358 13 C 0.068 3.932 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -4.429 23.443 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.045 4.045 3 C -0.215 4.215 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.090 4.090 9 H 0.122 0.878 10 C 0.304 3.696 11 O -0.393 6.393 12 O -0.274 6.274 13 C -0.005 4.005 14 C -0.146 4.146 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.282 -4.011 23.301 24.029 hybrid contribution 0.087 -0.253 -1.000 1.035 sum 4.368 -4.264 22.302 23.122 Atomic orbital electron populations 1.22143 0.94033 1.01597 1.03645 1.20337 0.95978 0.95759 0.92434 1.22225 1.00669 0.95201 1.03444 1.21608 0.95496 1.00382 0.96960 1.21629 0.95719 1.01140 0.97724 1.21523 1.00480 0.99411 0.93971 1.21590 0.92207 1.02147 0.99288 1.21135 0.97656 1.00512 0.89652 0.87791 1.23618 0.77609 0.83015 0.85354 1.90528 1.35708 1.25985 1.87047 1.86503 1.69529 1.56195 1.15176 1.23470 0.98757 0.95528 0.82748 1.21752 1.01089 1.00290 0.91501 1.19054 0.96511 0.95394 0.90397 1.21216 1.31533 1.12448 0.90686 0.92383 1.25036 0.95125 0.95020 0.99338 1.69980 1.36196 1.21862 1.25334 0.86492 0.78528 0.79439 0.83297 1.19655 1.20969 1.20974 0.92770 0.89886 0.93314 0.92634 0.90024 0.92953 0.91588 0.91865 0.91488 0.92021 0.91683 0.91518 0.90304 0.91034 0.91640 0.91628 0.92204 0.92213 0.96261 0.96262 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.18 37.16 0.30 -1.39 16 2 C -0.04 -0.45 0.51 -154.51 -0.08 -0.53 16 3 C -0.16 -1.71 7.48 37.16 0.28 -1.43 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.97 16 5 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 6 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 7 C -0.11 -1.12 4.86 -26.71 -0.13 -1.25 16 8 C -0.07 -0.78 1.95 -91.75 -0.18 -0.96 16 9 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 10 C 0.46 6.89 6.67 36.01 0.24 7.13 16 11 O -0.50 -8.48 11.10 -18.75 -0.21 -8.69 16 12 O -0.36 -6.00 10.12 -39.25 -0.40 -6.39 16 13 C 0.07 1.27 5.47 37.15 0.20 1.47 16 14 C -0.11 -2.28 5.53 -26.74 -0.15 -2.43 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.11 5.52 -51.93 -0.29 0.83 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.55 4.81 -51.93 -0.25 0.30 16 28 H 0.08 1.10 5.52 -51.93 -0.29 0.81 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -30.26 336.84 -8.10 -38.37 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.79 Total: -3.22 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -0.50 Total: -15.54 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.61 Total: -15.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.26 -8.10 -38.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789061803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.962 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds