Wall clock time and date at job start Mon Mar 30 2020 07:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 9 9 H 1.08992 * 109.47554 * 299.99692 * 8 2 1 10 10 C 1.50701 * 109.46990 * 60.00074 * 8 2 1 11 11 O 1.20826 * 119.99842 * 0.02562 * 10 8 2 12 12 O 1.34228 * 120.00108 * 179.97438 * 10 8 2 13 13 C 1.45199 * 117.00436 * 179.97438 * 12 10 8 14 14 C 1.52993 * 109.47482 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47287 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47354 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99650 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00572 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99599 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00584 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46871 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47183 * 119.99642 * 20 18 16 23 23 H 1.48493 * 109.47170 * 239.99901 * 20 18 16 24 24 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 25 25 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 26 26 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 29 29 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 33 33 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 34 34 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47045 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 38 38 H 1.09006 * 109.46924 * 300.00276 * 13 12 10 39 39 H 1.09001 * 109.46755 * 59.99811 * 13 12 10 40 40 H 1.09006 * 109.47020 * 299.99915 * 14 13 12 41 41 H 1.09001 * 109.47508 * 59.99424 * 14 13 12 42 42 H 1.09003 * 109.47281 * 299.99470 * 15 14 13 43 43 H 1.08998 * 109.47040 * 60.00052 * 15 14 13 44 44 H 0.97000 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2489 8 6 2.0400 -0.7212 -1.2492 9 1 1.6768 -1.7489 -1.2492 10 6 1.5377 -0.0108 -2.4797 11 8 0.8435 0.9718 -2.3688 12 8 1.8624 -0.4691 -3.6988 13 6 1.3428 0.2647 -4.8389 14 6 1.8145 -0.4021 -6.1326 15 6 1.2664 0.3708 -7.3339 16 6 1.7315 -0.2856 -8.6082 17 1 2.3559 -1.1658 -8.5655 18 6 1.3608 0.2380 -9.8286 19 7 0.6008 1.3101 -9.8806 20 14 1.9378 -0.5752 -11.4082 21 1 2.7757 -1.7564 -11.0793 22 1 0.7593 -1.0090 -12.2007 23 1 2.7376 0.3934 -12.2000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 -0.2074 2.1393 31 1 1.6767 -1.7489 1.2493 32 1 3.9330 0.3071 1.2498 33 1 3.9333 -1.2348 2.1394 34 1 3.7176 -2.4694 0.0002 35 1 5.1705 -1.4408 0.0004 36 1 3.9339 -1.2341 -2.1388 37 1 3.9334 0.3075 -1.2486 38 1 0.2533 0.2632 -4.8060 39 1 1.7059 1.2920 -4.8058 40 1 2.9040 -0.4009 -6.1657 41 1 1.4512 -1.4292 -6.1654 42 1 0.1769 0.3692 -7.3007 43 1 1.6294 1.3980 -7.3013 44 1 0.3397 1.6783 -10.7392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789061803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:12 Heat of formation + Delta-G solvation = -144.058337 kcal Electronic energy + Delta-G solvation = -21098.393837 eV Core-core repulsion = 18013.557752 eV Total energy + Delta-G solvation = -3084.836085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14701 -39.88103 -37.68723 -35.96428 -34.04221 -33.69866 -32.25200 -29.10182 -28.30253 -27.61745 -25.45051 -24.32966 -22.36155 -22.18234 -21.67371 -19.42062 -18.74804 -18.38578 -17.66583 -17.21302 -16.50432 -16.06524 -15.81300 -15.47286 -15.27897 -14.85266 -14.34841 -14.25203 -13.97607 -13.86893 -13.76255 -13.49678 -12.94371 -12.83002 -12.67538 -12.52262 -12.44037 -12.37891 -12.31460 -12.04601 -11.94830 -11.89267 -11.73436 -11.55871 -11.37636 -11.26813 -11.06130 -10.96275 -10.62171 -10.59390 -8.23122 -6.34855 1.18542 1.40847 1.41148 1.54794 1.69972 2.40642 3.10770 3.44010 3.64552 3.68664 3.98065 4.05471 4.05952 4.12876 4.26393 4.34634 4.38962 4.39786 4.46471 4.53273 4.74432 4.77787 4.83425 4.84228 4.87309 4.98699 5.04601 5.06997 5.12685 5.13798 5.19585 5.22022 5.31552 5.36645 5.43231 5.44347 5.47700 5.61658 5.63942 5.75534 5.78730 6.17822 6.76897 6.81862 7.34868 8.89384 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.039291 B = 0.003218 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.465500 B = 8698.891517 C = 9124.856822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.044 4.044 3 C -0.157 4.157 4 C -0.102 4.102 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.066 4.066 9 H 0.120 0.880 10 C 0.454 3.546 11 O -0.525 6.525 12 O -0.359 6.359 13 C 0.079 3.921 14 C -0.093 4.093 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.065 0.935 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.066 0.934 42 H -0.004 1.004 43 H -0.004 1.004 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 -6.283 24.780 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.044 4.044 3 C -0.213 4.213 4 C -0.139 4.139 5 C -0.161 4.161 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.084 4.084 9 H 0.138 0.862 10 C 0.299 3.701 11 O -0.414 6.414 12 O -0.276 6.276 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.794 3.206 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.588 -5.873 24.662 25.960 hybrid contribution -0.356 0.380 -1.356 1.453 sum 5.233 -5.492 23.306 24.509 Atomic orbital electron populations 1.22109 0.94717 1.01938 1.02583 1.20384 0.95433 0.95462 0.93132 1.22180 1.01203 0.95651 1.02302 1.21584 0.96023 1.00664 0.95624 1.21635 0.95059 1.01176 0.98188 1.21518 1.01110 0.99544 0.92732 1.21609 0.90948 1.02057 1.00505 1.21328 0.98657 1.00780 0.87683 0.86203 1.24575 0.77042 0.82971 0.85486 1.90546 1.36643 1.27093 1.87133 1.86497 1.69675 1.55994 1.15447 1.23066 0.98287 0.95096 0.83044 1.21445 1.01135 0.99808 0.90686 1.18935 0.95068 0.94783 0.92342 1.21654 1.31727 1.12853 0.91829 0.91660 1.26028 0.95068 0.95553 1.03330 1.70112 1.37389 1.23408 1.26507 0.85322 0.78235 0.78685 0.78350 1.18308 1.20355 1.20360 0.91716 0.93016 0.92254 0.91753 0.93196 0.91979 0.90668 0.90789 0.91832 0.90244 0.90715 0.90472 0.90922 0.91813 0.92213 0.92237 0.91540 0.91558 0.98582 0.98586 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.18 71.98 0.59 -2.64 16 2 C -0.04 -0.82 0.51 -52.18 -0.03 -0.85 16 3 C -0.16 -3.27 7.48 71.98 0.54 -2.73 16 4 C -0.10 -1.29 4.73 30.59 0.14 -1.15 16 5 C -0.12 -1.38 5.65 30.60 0.17 -1.20 16 6 C -0.11 -1.36 5.92 30.60 0.18 -1.18 16 7 C -0.11 -2.03 4.86 30.61 0.15 -1.88 16 8 C -0.07 -1.37 1.95 -11.52 -0.02 -1.39 16 9 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 10 C 0.45 13.64 6.67 71.24 0.48 14.12 16 11 O -0.52 -18.25 11.10 21.96 0.24 -18.01 16 12 O -0.36 -12.06 10.12 -51.40 -0.52 -12.58 16 13 C 0.08 3.01 5.47 71.98 0.39 3.40 16 14 C -0.09 -3.95 5.53 30.59 0.17 -3.78 16 15 C 0.03 1.39 4.97 29.85 0.15 1.53 16 16 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 20 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.41 5.52 -2.39 -0.01 1.40 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.20 4.81 -2.39 -0.01 1.19 16 28 H 0.05 1.37 5.52 -2.39 -0.01 1.36 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 1.39 8.11 -2.39 -0.02 1.37 16 37 H 0.06 1.23 6.43 -2.39 -0.02 1.21 16 38 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 40 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -65.87 336.84 6.59 -59.28 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.95 Total: 10.22 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 3.61 Total: -28.19 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.28 Total: -56.98 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.28 Total: -30.59 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -65.87 6.59 -59.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789061803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.783 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds