Wall clock time and date at job start Mon Mar 30 2020 07:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.53007 * 109.47243 * 239.99945 * 2 1 3 5 5 C 1.50704 * 109.47014 * 59.99909 * 4 2 1 6 6 H 1.08001 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99785 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47136 * 90.00636 * 9 7 5 11 11 H 1.48502 * 109.47091 * 210.00266 * 9 7 5 12 12 H 1.48500 * 109.47198 * 329.99875 * 9 7 5 13 13 C 1.52998 * 109.46989 * 120.00020 * 2 1 3 14 14 O 1.45196 * 109.47070 * 299.99884 * 13 2 1 15 15 C 1.34804 * 116.99843 * 180.02562 * 14 13 2 16 16 O 1.21538 * 119.99941 * 359.72909 * 15 14 13 17 17 C 1.46951 * 119.99907 * 180.02562 * 15 14 13 18 18 C 1.32183 * 118.87990 * 179.73273 * 17 15 14 19 19 C 1.50274 * 122.56053 * 180.10408 * 18 17 15 20 20 O 1.42889 * 110.14789 * 344.83463 * 19 18 17 21 21 C 1.43274 * 113.10362 * 50.33367 * 20 19 18 22 22 C 1.50421 * 118.88050 * 0.02562 * 17 15 14 23 23 H 1.08994 * 109.47260 * 299.99888 * 1 2 3 24 24 H 1.09005 * 109.47000 * 60.00333 * 1 2 3 25 25 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47428 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47130 * 300.00224 * 3 2 1 28 28 H 1.09003 * 109.47043 * 59.99678 * 3 2 1 29 29 H 1.08999 * 109.47130 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.47345 * 300.00059 * 4 2 1 31 31 H 0.97005 * 120.00048 * 180.02562 * 8 7 5 32 32 H 1.09012 * 109.46921 * 179.97438 * 13 2 1 33 33 H 1.08996 * 109.47090 * 60.00252 * 13 2 1 34 34 H 1.07994 * 118.71660 * 0.37251 * 18 17 15 35 35 H 1.08995 * 109.50874 * 224.52050 * 19 18 17 36 36 H 1.08997 * 109.06254 * 104.87024 * 19 18 17 37 37 H 1.08996 * 109.63697 * 171.44182 * 21 20 19 38 38 H 1.08999 * 109.63546 * 50.82855 * 21 20 19 39 39 H 1.09000 * 109.45563 * 283.37076 * 22 17 15 40 40 H 1.09000 * 109.45564 * 43.30996 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8527 9 14 1.2491 0.3994 -5.2572 10 1 2.2274 1.4410 -5.6608 11 1 1.0844 -0.5795 -6.3617 12 1 -0.0592 1.0368 -4.9616 13 6 2.0399 -0.7212 1.2492 14 8 1.5559 -0.0368 2.4347 15 6 1.9186 -0.5487 3.6279 16 8 2.6160 -1.5429 3.6759 17 6 1.4652 0.0915 4.8705 18 6 1.8296 -0.4322 6.0282 19 6 1.4118 0.1530 7.3478 20 8 0.9086 1.4774 7.1617 21 6 -0.0832 1.5623 6.1312 22 6 0.5969 1.3166 4.7817 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2493 31 1 2.8623 -1.8819 -4.7337 32 1 3.1301 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 2.4553 -1.3124 6.0256 35 1 2.2690 0.1832 8.0203 36 1 0.6323 -0.4719 7.7836 37 1 -0.5350 2.5542 6.1386 38 1 -0.8501 0.8059 6.2977 39 1 1.2112 2.1790 4.5227 40 1 -0.1625 1.1684 4.0139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802250181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:37 Heat of formation + Delta-G solvation = -138.277468 kcal Electronic energy + Delta-G solvation = -20674.674875 eV Core-core repulsion = 17454.256372 eV Total energy + Delta-G solvation = -3220.418503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51857 -39.25874 -37.23222 -35.40106 -34.05265 -32.34038 -31.42329 -27.60714 -26.87884 -26.42309 -25.93572 -24.17138 -23.08928 -21.67223 -18.77396 -18.19014 -17.72929 -16.81007 -16.40346 -16.20014 -16.12368 -15.35433 -14.92636 -14.55767 -14.02486 -13.72382 -13.56757 -13.14767 -12.96406 -12.86721 -12.39204 -12.31787 -12.06893 -11.82419 -11.28149 -11.14127 -10.98029 -10.84436 -10.61567 -10.61499 -10.35883 -10.30140 -10.22973 -9.97087 -9.75466 -9.44272 -9.22789 -8.95927 -8.37829 -6.01956 -4.03202 0.95449 2.85491 2.91720 3.30747 3.37516 3.39916 3.53655 4.38955 4.43084 4.49758 4.57787 4.88937 4.93823 5.00538 5.21371 5.33693 5.40240 5.43197 5.48757 5.49967 5.69020 5.80495 5.92723 6.01463 6.17810 6.22176 6.36382 6.49668 6.60660 6.69499 6.70466 6.78041 7.09598 7.10172 7.12252 7.59546 7.71192 7.89922 7.96715 8.38317 9.01119 9.59954 11.09733 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043534 B = 0.003588 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.020873 B = 7801.292258 C = 8217.619816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.079 3.921 14 O -0.343 6.343 15 C 0.493 3.507 16 O -0.515 6.515 17 C -0.137 4.137 18 C -0.116 4.116 19 C 0.087 3.913 20 O -0.378 6.378 21 C 0.058 3.942 22 C -0.114 4.114 23 H 0.039 0.961 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 4.909 20.292 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 O -0.258 6.258 15 C 0.338 3.662 16 O -0.406 6.406 17 C -0.138 4.138 18 C -0.135 4.135 19 C 0.011 3.989 20 O -0.296 6.296 21 C -0.019 4.019 22 C -0.151 4.151 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.521 4.660 20.215 21.232 hybrid contribution -0.097 -0.166 -1.300 1.314 sum -4.618 4.494 18.915 19.983 Atomic orbital electron populations 1.21713 0.94824 1.00916 1.00815 1.20814 0.96149 0.96226 0.92653 1.21715 1.00044 0.95708 1.00833 1.19128 0.96381 0.95291 0.89434 1.21151 1.31250 1.12110 0.90283 0.92059 1.25017 0.95299 0.95075 0.99137 1.69967 1.36980 1.23044 1.23506 0.86608 0.79239 0.79388 0.82866 1.20717 1.21322 1.19852 1.23532 0.98975 0.95944 0.80984 1.86574 1.69134 1.55532 1.14606 1.21343 0.77581 0.82083 0.85154 1.90838 1.36029 1.25391 1.88332 1.20263 1.03357 0.99566 0.90604 1.23815 0.96056 0.99402 0.94203 1.21584 0.99648 0.84091 0.93557 1.88139 1.57741 1.27596 1.56154 1.22745 0.90044 1.02987 0.86097 1.21032 0.99334 0.95639 0.99090 0.94242 0.91527 0.93788 0.93773 0.91547 0.94189 0.96357 0.96356 0.93003 0.91598 0.91607 0.84503 0.86748 0.90692 0.87805 0.92417 0.89041 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.08 37.16 0.30 -2.06 16 2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 3 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.71 7.65 -34.44 -0.26 -13.98 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.08 1.48 4.33 37.16 0.16 1.64 16 14 O -0.34 -5.75 8.29 -40.78 -0.34 -6.09 16 15 C 0.49 7.87 7.86 34.26 0.27 8.14 16 16 O -0.52 -9.53 15.85 -19.29 -0.31 -9.83 16 17 C -0.14 -1.67 5.86 -103.16 -0.60 -2.27 16 18 C -0.12 -1.18 9.58 -36.44 -0.35 -1.53 16 19 C 0.09 0.67 7.04 35.80 0.25 0.92 16 20 O -0.38 -3.60 10.83 -35.23 -0.38 -3.99 16 21 C 0.06 0.47 6.88 37.21 0.26 0.72 16 22 C -0.11 -1.14 5.73 -27.96 -0.16 -1.30 16 23 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 24 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 28 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.14 1.42 7.29 -52.49 -0.38 1.04 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.95 8.00 -51.93 -0.42 0.53 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -31.29 327.69 -6.88 -38.17 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.36 Total: -2.79 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.14 Total: -10.87 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.03 Total: -19.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.29 -6.88 -38.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802250181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.110 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds