Wall clock time and date at job start Mon Mar 30 2020 07:13:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47214 * 2 1
4 4 C 1.53007 * 109.47243 * 239.99945 * 2 1 3
5 5 C 1.50704 * 109.47014 * 59.99909 * 4 2 1
6 6 H 1.08001 * 119.99616 * 0.02562 * 5 4 2
7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 2
8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 119.99785 * 180.02562 * 7 5 4
10 10 H 1.48492 * 109.47136 * 90.00636 * 9 7 5
11 11 H 1.48502 * 109.47091 * 210.00266 * 9 7 5
12 12 H 1.48500 * 109.47198 * 329.99875 * 9 7 5
13 13 C 1.52998 * 109.46989 * 120.00020 * 2 1 3
14 14 O 1.45196 * 109.47070 * 299.99884 * 13 2 1
15 15 C 1.34804 * 116.99843 * 180.02562 * 14 13 2
16 16 O 1.21538 * 119.99941 * 359.72909 * 15 14 13
17 17 C 1.46951 * 119.99907 * 180.02562 * 15 14 13
18 18 C 1.32183 * 118.87990 * 179.73273 * 17 15 14
19 19 C 1.50274 * 122.56053 * 180.10408 * 18 17 15
20 20 O 1.42889 * 110.14789 * 344.83463 * 19 18 17
21 21 C 1.43274 * 113.10362 * 50.33367 * 20 19 18
22 22 C 1.50421 * 118.88050 * 0.02562 * 17 15 14
23 23 H 1.08994 * 109.47260 * 299.99888 * 1 2 3
24 24 H 1.09005 * 109.47000 * 60.00333 * 1 2 3
25 25 H 1.09004 * 109.47306 * 179.97438 * 1 2 3
26 26 H 1.08996 * 109.47428 * 180.02562 * 3 2 1
27 27 H 1.09006 * 109.47130 * 300.00224 * 3 2 1
28 28 H 1.09003 * 109.47043 * 59.99678 * 3 2 1
29 29 H 1.08999 * 109.47130 * 180.02562 * 4 2 1
30 30 H 1.08996 * 109.47345 * 300.00059 * 4 2 1
31 31 H 0.97005 * 120.00048 * 180.02562 * 8 7 5
32 32 H 1.09012 * 109.46921 * 179.97438 * 13 2 1
33 33 H 1.08996 * 109.47090 * 60.00252 * 13 2 1
34 34 H 1.07994 * 118.71660 * 0.37251 * 18 17 15
35 35 H 1.08995 * 109.50874 * 224.52050 * 19 18 17
36 36 H 1.08997 * 109.06254 * 104.87024 * 19 18 17
37 37 H 1.08996 * 109.63697 * 171.44182 * 21 20 19
38 38 H 1.08999 * 109.63546 * 50.82855 * 21 20 19
39 39 H 1.09000 * 109.45563 * 283.37076 * 22 17 15
40 40 H 1.09000 * 109.45564 * 43.30996 * 22 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 1.5377 -0.0109 -2.4798
6 1 0.9171 0.8675 -2.3806
7 6 1.8712 -0.4816 -3.7320
8 7 2.6273 -1.5509 -3.8527
9 14 1.2491 0.3994 -5.2572
10 1 2.2274 1.4410 -5.6608
11 1 1.0844 -0.5795 -6.3617
12 1 -0.0592 1.0368 -4.9616
13 6 2.0399 -0.7212 1.2492
14 8 1.5559 -0.0368 2.4347
15 6 1.9186 -0.5487 3.6279
16 8 2.6160 -1.5429 3.6759
17 6 1.4652 0.0915 4.8705
18 6 1.8296 -0.4322 6.0282
19 6 1.4118 0.1530 7.3478
20 8 0.9086 1.4774 7.1617
21 6 -0.0832 1.5623 6.1312
22 6 0.5969 1.3166 4.7817
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3634 -1.0277 -0.0005
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9563 -0.8900
28 1 1.6766 1.9563 0.8900
29 1 3.1300 -0.7217 -1.2490
30 1 1.6767 -1.7489 -1.2493
31 1 2.8623 -1.8819 -4.7337
32 1 3.1301 -0.7216 1.2490
33 1 1.6766 -1.7489 1.2492
34 1 2.4553 -1.3124 6.0256
35 1 2.2690 0.1832 8.0203
36 1 0.6323 -0.4719 7.7836
37 1 -0.5350 2.5542 6.1386
38 1 -0.8501 0.8059 6.2977
39 1 1.2112 2.1790 4.5227
40 1 -0.1625 1.1684 4.0139
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000802250181.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:13:37
Heat of formation + Delta-G solvation = -138.277468 kcal
Electronic energy + Delta-G solvation = -20674.674875 eV
Core-core repulsion = 17454.256372 eV
Total energy + Delta-G solvation = -3220.418503 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.151 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.51857 -39.25874 -37.23222 -35.40106 -34.05265 -32.34038 -31.42329 -27.60714
-26.87884 -26.42309 -25.93572 -24.17138 -23.08928 -21.67223 -18.77396 -18.19014
-17.72929 -16.81007 -16.40346 -16.20014 -16.12368 -15.35433 -14.92636 -14.55767
-14.02486 -13.72382 -13.56757 -13.14767 -12.96406 -12.86721 -12.39204 -12.31787
-12.06893 -11.82419 -11.28149 -11.14127 -10.98029 -10.84436 -10.61567 -10.61499
-10.35883 -10.30140 -10.22973 -9.97087 -9.75466 -9.44272 -9.22789 -8.95927
-8.37829 -6.01956 -4.03202 0.95449 2.85491 2.91720 3.30747 3.37516
3.39916 3.53655 4.38955 4.43084 4.49758 4.57787 4.88937 4.93823
5.00538 5.21371 5.33693 5.40240 5.43197 5.48757 5.49967 5.69020
5.80495 5.92723 6.01463 6.17810 6.22176 6.36382 6.49668 6.60660
6.69499 6.70466 6.78041 7.09598 7.10172 7.12252 7.59546 7.71192
7.89922 7.96715 8.38317 9.01119 9.59954 11.09733
Molecular weight = 268.15amu
Principal moments of inertia in cm(-1)
A = 0.043534 B = 0.003588 C = 0.003406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 643.020873 B = 7801.292258 C = 8217.619816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.058 4.058
3 C -0.126 4.126
4 C 0.035 3.965
5 C -0.510 4.510
6 H 0.061 0.939
7 C 0.056 3.944
8 N -0.896 5.896
9 Si 0.891 3.109
10 H -0.281 1.281
11 H -0.287 1.287
12 H -0.274 1.274
13 C 0.079 3.921
14 O -0.343 6.343
15 C 0.493 3.507
16 O -0.515 6.515
17 C -0.137 4.137
18 C -0.116 4.116
19 C 0.087 3.913
20 O -0.378 6.378
21 C 0.058 3.942
22 C -0.114 4.114
23 H 0.039 0.961
24 H 0.066 0.934
25 H 0.043 0.957
26 H 0.043 0.957
27 H 0.066 0.934
28 H 0.039 0.961
29 H 0.018 0.982
30 H 0.018 0.982
31 H 0.260 0.740
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.137 0.863
35 H 0.115 0.885
36 H 0.075 0.925
37 H 0.104 0.896
38 H 0.057 0.943
39 H 0.091 0.909
40 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.862 4.909 20.292 21.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.058 4.058
3 C -0.183 4.183
4 C -0.002 4.002
5 C -0.548 4.548
6 H 0.079 0.921
7 C -0.145 4.145
8 N -0.535 5.535
9 Si 0.719 3.281
10 H -0.207 1.207
11 H -0.213 1.213
12 H -0.199 1.199
13 C 0.006 3.994
14 O -0.258 6.258
15 C 0.338 3.662
16 O -0.406 6.406
17 C -0.138 4.138
18 C -0.135 4.135
19 C 0.011 3.989
20 O -0.296 6.296
21 C -0.019 4.019
22 C -0.151 4.151
23 H 0.058 0.942
24 H 0.085 0.915
25 H 0.062 0.938
26 H 0.062 0.938
27 H 0.085 0.915
28 H 0.058 0.942
29 H 0.036 0.964
30 H 0.036 0.964
31 H 0.070 0.930
32 H 0.084 0.916
33 H 0.084 0.916
34 H 0.155 0.845
35 H 0.133 0.867
36 H 0.093 0.907
37 H 0.122 0.878
38 H 0.076 0.924
39 H 0.110 0.890
40 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -4.521 4.660 20.215 21.232
hybrid contribution -0.097 -0.166 -1.300 1.314
sum -4.618 4.494 18.915 19.983
Atomic orbital electron populations
1.21713 0.94824 1.00916 1.00815 1.20814 0.96149 0.96226 0.92653
1.21715 1.00044 0.95708 1.00833 1.19128 0.96381 0.95291 0.89434
1.21151 1.31250 1.12110 0.90283 0.92059 1.25017 0.95299 0.95075
0.99137 1.69967 1.36980 1.23044 1.23506 0.86608 0.79239 0.79388
0.82866 1.20717 1.21322 1.19852 1.23532 0.98975 0.95944 0.80984
1.86574 1.69134 1.55532 1.14606 1.21343 0.77581 0.82083 0.85154
1.90838 1.36029 1.25391 1.88332 1.20263 1.03357 0.99566 0.90604
1.23815 0.96056 0.99402 0.94203 1.21584 0.99648 0.84091 0.93557
1.88139 1.57741 1.27596 1.56154 1.22745 0.90044 1.02987 0.86097
1.21032 0.99334 0.95639 0.99090 0.94242 0.91527 0.93788 0.93773
0.91547 0.94189 0.96357 0.96356 0.93003 0.91598 0.91607 0.84503
0.86748 0.90692 0.87805 0.92417 0.89041 0.88516
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.36 8.08 37.16 0.30 -2.06 16
2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16
3 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16
4 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16
5 C -0.51 -13.71 7.65 -34.44 -0.26 -13.98 16
6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16
7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16
8 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16
9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16
10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
13 C 0.08 1.48 4.33 37.16 0.16 1.64 16
14 O -0.34 -5.75 8.29 -40.78 -0.34 -6.09 16
15 C 0.49 7.87 7.86 34.26 0.27 8.14 16
16 O -0.52 -9.53 15.85 -19.29 -0.31 -9.83 16
17 C -0.14 -1.67 5.86 -103.16 -0.60 -2.27 16
18 C -0.12 -1.18 9.58 -36.44 -0.35 -1.53 16
19 C 0.09 0.67 7.04 35.80 0.25 0.92 16
20 O -0.38 -3.60 10.83 -35.23 -0.38 -3.99 16
21 C 0.06 0.47 6.88 37.21 0.26 0.72 16
22 C -0.11 -1.14 5.73 -27.96 -0.16 -1.30 16
23 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16
24 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16
25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
27 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16
28 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16
29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
32 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16
33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
34 H 0.14 1.42 7.29 -52.49 -0.38 1.04 16
35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16
36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16
39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
40 H 0.10 0.95 8.00 -51.93 -0.42 0.53 16
LS Contribution 327.69 15.07 4.94 4.94
Total: -1.00 -31.29 327.69 -6.88 -38.17
By element:
Atomic # 1 Polarization: 3.58 SS G_CDS: -6.36 Total: -2.79 kcal
Atomic # 6 Polarization: -10.72 SS G_CDS: -0.14 Total: -10.87 kcal
Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.81 kcal
Atomic # 8 Polarization: -18.89 SS G_CDS: -1.03 Total: -19.91 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -31.29 -6.88 -38.17 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000802250181.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.110 kcal
(2) G-P(sol) polarization free energy of solvation -31.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.399 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.277 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds