Wall clock time and date at job start Mon Mar 30 2020 07:13:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47214 * 2 1
4 4 C 1.53007 * 109.47243 * 239.99945 * 2 1 3
5 5 C 1.50704 * 109.47014 * 59.99909 * 4 2 1
6 6 H 1.08001 * 119.99616 * 0.02562 * 5 4 2
7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 2
8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 119.99785 * 180.02562 * 7 5 4
10 10 H 1.48492 * 109.47136 * 90.00636 * 9 7 5
11 11 H 1.48502 * 109.47091 * 210.00266 * 9 7 5
12 12 H 1.48500 * 109.47198 * 329.99875 * 9 7 5
13 13 C 1.52998 * 109.46989 * 120.00020 * 2 1 3
14 14 O 1.45196 * 109.47070 * 299.99884 * 13 2 1
15 15 C 1.34804 * 116.99843 * 180.02562 * 14 13 2
16 16 O 1.21538 * 119.99941 * 359.72909 * 15 14 13
17 17 C 1.46951 * 119.99907 * 180.02562 * 15 14 13
18 18 C 1.32183 * 118.87990 * 179.73273 * 17 15 14
19 19 C 1.50274 * 122.56053 * 180.10408 * 18 17 15
20 20 O 1.42889 * 110.14789 * 344.83463 * 19 18 17
21 21 C 1.43274 * 113.10362 * 50.33367 * 20 19 18
22 22 C 1.50421 * 118.88050 * 0.02562 * 17 15 14
23 23 H 1.08994 * 109.47260 * 299.99888 * 1 2 3
24 24 H 1.09005 * 109.47000 * 60.00333 * 1 2 3
25 25 H 1.09004 * 109.47306 * 179.97438 * 1 2 3
26 26 H 1.08996 * 109.47428 * 180.02562 * 3 2 1
27 27 H 1.09006 * 109.47130 * 300.00224 * 3 2 1
28 28 H 1.09003 * 109.47043 * 59.99678 * 3 2 1
29 29 H 1.08999 * 109.47130 * 180.02562 * 4 2 1
30 30 H 1.08996 * 109.47345 * 300.00059 * 4 2 1
31 31 H 0.97005 * 120.00048 * 180.02562 * 8 7 5
32 32 H 1.09012 * 109.46921 * 179.97438 * 13 2 1
33 33 H 1.08996 * 109.47090 * 60.00252 * 13 2 1
34 34 H 1.07994 * 118.71660 * 0.37251 * 18 17 15
35 35 H 1.08995 * 109.50874 * 224.52050 * 19 18 17
36 36 H 1.08997 * 109.06254 * 104.87024 * 19 18 17
37 37 H 1.08996 * 109.63697 * 171.44182 * 21 20 19
38 38 H 1.08999 * 109.63546 * 50.82855 * 21 20 19
39 39 H 1.09000 * 109.45563 * 283.37076 * 22 17 15
40 40 H 1.09000 * 109.45564 * 43.30996 * 22 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 1.5377 -0.0109 -2.4798
6 1 0.9171 0.8675 -2.3806
7 6 1.8712 -0.4816 -3.7320
8 7 2.6273 -1.5509 -3.8527
9 14 1.2491 0.3994 -5.2572
10 1 2.2274 1.4410 -5.6608
11 1 1.0844 -0.5795 -6.3617
12 1 -0.0592 1.0368 -4.9616
13 6 2.0399 -0.7212 1.2492
14 8 1.5559 -0.0368 2.4347
15 6 1.9186 -0.5487 3.6279
16 8 2.6160 -1.5429 3.6759
17 6 1.4652 0.0915 4.8705
18 6 1.8296 -0.4322 6.0282
19 6 1.4118 0.1530 7.3478
20 8 0.9086 1.4774 7.1617
21 6 -0.0832 1.5623 6.1312
22 6 0.5969 1.3166 4.7817
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3634 -1.0277 -0.0005
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9563 -0.8900
28 1 1.6766 1.9563 0.8900
29 1 3.1300 -0.7217 -1.2490
30 1 1.6767 -1.7489 -1.2493
31 1 2.8623 -1.8819 -4.7337
32 1 3.1301 -0.7216 1.2490
33 1 1.6766 -1.7489 1.2492
34 1 2.4553 -1.3124 6.0256
35 1 2.2690 0.1832 8.0203
36 1 0.6323 -0.4719 7.7836
37 1 -0.5350 2.5542 6.1386
38 1 -0.8501 0.8059 6.2977
39 1 1.2112 2.1790 4.5227
40 1 -0.1625 1.1684 4.0139
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000802250181.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:13:36
Heat of formation + Delta-G solvation = -156.339874 kcal
Electronic energy + Delta-G solvation = -20675.458120 eV
Core-core repulsion = 17454.256372 eV
Total energy + Delta-G solvation = -3221.201747 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.151 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.72240 -40.11179 -38.75400 -36.93969 -34.91999 -34.39961 -32.10254 -29.40720
-28.34817 -27.98087 -27.05866 -25.23548 -24.63698 -22.87703 -20.08463 -19.53932
-18.70650 -18.38954 -17.89324 -17.53683 -17.08170 -16.51224 -16.09239 -15.88706
-15.33941 -15.11477 -14.82340 -14.55918 -14.13648 -14.04664 -13.85995 -13.65712
-13.45228 -12.98776 -12.75574 -12.67997 -12.54707 -12.34196 -12.30220 -12.07366
-11.95102 -11.88784 -11.53196 -11.40402 -11.08403 -10.93005 -10.69810 -10.53801
-10.26333 -8.16730 -6.24808 -0.02696 1.42391 1.43087 1.53473 1.61236
1.77391 2.43551 2.92460 3.17938 3.47449 3.67141 3.79795 3.89237
3.89501 4.18612 4.22522 4.31204 4.42818 4.43701 4.54063 4.55981
4.71128 4.76413 4.81055 4.99001 4.99883 5.05402 5.11148 5.16429
5.33829 5.39924 5.42554 5.43637 5.48740 5.51861 5.72116 5.85787
6.10292 6.26299 6.61018 6.88938 7.43019 8.96065
Molecular weight = 268.15amu
Principal moments of inertia in cm(-1)
A = 0.043534 B = 0.003588 C = 0.003406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 643.020873 B = 7801.292258 C = 8217.619816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.054 4.054
3 C -0.119 4.119
4 C 0.040 3.960
5 C -0.515 4.515
6 H 0.073 0.927
7 C -0.004 4.004
8 N -0.938 5.938
9 Si 0.961 3.039
10 H -0.275 1.275
11 H -0.288 1.288
12 H -0.259 1.259
13 C 0.089 3.911
14 O -0.337 6.337
15 C 0.490 3.510
16 O -0.550 6.550
17 C -0.165 4.165
18 C -0.090 4.090
19 C 0.086 3.914
20 O -0.393 6.393
21 C 0.059 3.941
22 C -0.110 4.110
23 H 0.067 0.933
24 H 0.057 0.943
25 H 0.037 0.963
26 H 0.036 0.964
27 H 0.057 0.943
28 H 0.066 0.934
29 H -0.012 1.012
30 H -0.011 1.011
31 H 0.261 0.739
32 H 0.054 0.946
33 H 0.056 0.944
34 H 0.132 0.868
35 H 0.138 0.862
36 H 0.102 0.898
37 H 0.122 0.878
38 H 0.071 0.929
39 H 0.086 0.914
40 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.414 6.669 22.012 23.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.055 4.055
3 C -0.176 4.176
4 C 0.003 3.997
5 C -0.553 4.553
6 H 0.091 0.909
7 C -0.201 4.201
8 N -0.579 5.579
9 Si 0.786 3.214
10 H -0.201 1.201
11 H -0.214 1.214
12 H -0.183 1.183
13 C 0.015 3.985
14 O -0.253 6.253
15 C 0.338 3.662
16 O -0.443 6.443
17 C -0.166 4.166
18 C -0.108 4.108
19 C 0.010 3.990
20 O -0.312 6.312
21 C -0.017 4.017
22 C -0.147 4.147
23 H 0.086 0.914
24 H 0.076 0.924
25 H 0.057 0.943
26 H 0.055 0.945
27 H 0.076 0.924
28 H 0.085 0.915
29 H 0.007 0.993
30 H 0.008 0.992
31 H 0.070 0.930
32 H 0.073 0.927
33 H 0.074 0.926
34 H 0.150 0.850
35 H 0.156 0.844
36 H 0.120 0.880
37 H 0.140 0.860
38 H 0.089 0.911
39 H 0.105 0.895
40 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -6.089 6.444 21.955 23.678
hybrid contribution 0.434 -0.783 -1.700 1.921
sum -5.655 5.661 20.256 21.779
Atomic orbital electron populations
1.21640 0.93320 1.00892 1.01717 1.20631 0.97269 0.96537 0.91017
1.21644 0.99618 0.94657 1.01708 1.18986 0.94434 0.94336 0.91948
1.21536 1.30708 1.12187 0.90879 0.90905 1.25953 0.95563 0.95829
1.02735 1.70117 1.38663 1.24908 1.24242 0.85497 0.79225 0.78118
0.78545 1.20063 1.21395 1.18305 1.23150 0.98182 0.95440 0.81753
1.86555 1.69089 1.55168 1.14456 1.22144 0.76741 0.81691 0.85645
1.90820 1.37821 1.27062 1.88598 1.20318 1.05908 1.01367 0.89051
1.24169 0.93487 0.98209 0.94980 1.21872 1.01304 0.83765 0.92041
1.88132 1.58174 1.28475 1.56381 1.22860 0.89755 1.04571 0.84485
1.21050 0.98933 0.94225 1.00541 0.91378 0.92418 0.94337 0.94468
0.92354 0.91459 0.99337 0.99233 0.93046 0.92727 0.92550 0.84998
0.84444 0.88020 0.85968 0.91111 0.89522 0.88535
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.36 8.08 71.98 0.58 -3.78 16
2 C -0.05 -2.22 0.61 -52.18 -0.03 -2.25 16
3 C -0.12 -4.43 8.08 71.98 0.58 -3.85 16
4 C 0.04 2.09 4.04 29.85 0.12 2.21 16
5 C -0.52 -28.03 7.65 25.60 0.20 -27.83 16
6 H 0.07 3.73 5.68 -2.91 -0.02 3.71 16
7 C 0.00 -0.22 5.46 84.66 0.46 0.25 16
8 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16
9 Si 0.96 43.74 29.54 68.60 2.03 45.77 16
10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16
12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16
13 C 0.09 3.41 4.33 71.98 0.31 3.72 16
14 O -0.34 -11.15 8.29 -57.16 -0.47 -11.63 16
15 C 0.49 15.53 7.86 70.10 0.55 16.08 16
16 O -0.55 -20.71 15.85 19.71 0.31 -20.39 16
17 C -0.17 -3.80 5.86 -18.68 -0.11 -3.91 16
18 C -0.09 -1.64 9.58 24.54 0.24 -1.41 16
19 C 0.09 1.01 7.04 71.10 0.50 1.51 16
20 O -0.39 -6.20 10.83 -148.98 -1.61 -7.81 16
21 C 0.06 0.77 6.88 72.02 0.50 1.27 16
22 C -0.11 -1.97 5.73 29.80 0.17 -1.80 16
23 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16
24 H 0.06 2.21 6.62 -2.38 -0.02 2.20 16
25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
27 H 0.06 2.25 6.62 -2.38 -0.02 2.23 16
28 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16
29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
31 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16
32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16
33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
34 H 0.13 2.56 7.29 -2.91 -0.02 2.54 16
35 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16
36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16
37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16
38 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16
39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
40 H 0.10 1.69 8.00 -2.39 -0.02 1.67 16
Total: -1.00 -68.72 327.69 5.61 -63.11
By element:
Atomic # 1 Polarization: 6.61 SS G_CDS: 1.01 Total: 7.62 kcal
Atomic # 6 Polarization: -23.86 SS G_CDS: 4.06 Total: -19.79 kcal
Atomic # 7 Polarization: -57.16 SS G_CDS: 0.28 Total: -56.87 kcal
Atomic # 8 Polarization: -38.06 SS G_CDS: -1.78 Total: -39.83 kcal
Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal
Total: -68.72 5.61 -63.11 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000802250181.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.228 kcal
(2) G-P(sol) polarization free energy of solvation -68.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.952 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal
(6) G-S(sol) free energy of system = (1) + (5) -156.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds