Wall clock time and date at job start Mon Mar 30 2020 07:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.53007 * 109.47243 * 239.99945 * 2 1 3 5 5 C 1.50704 * 109.47014 * 59.99909 * 4 2 1 6 6 H 1.08001 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99785 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47136 * 90.00636 * 9 7 5 11 11 H 1.48502 * 109.47091 * 210.00266 * 9 7 5 12 12 H 1.48500 * 109.47198 * 329.99875 * 9 7 5 13 13 C 1.52998 * 109.46989 * 120.00020 * 2 1 3 14 14 O 1.45196 * 109.47070 * 299.99884 * 13 2 1 15 15 C 1.34804 * 116.99843 * 180.02562 * 14 13 2 16 16 O 1.21538 * 119.99941 * 359.72909 * 15 14 13 17 17 C 1.46951 * 119.99907 * 180.02562 * 15 14 13 18 18 C 1.32183 * 118.87990 * 179.73273 * 17 15 14 19 19 C 1.50274 * 122.56053 * 180.10408 * 18 17 15 20 20 O 1.42889 * 110.14789 * 344.83463 * 19 18 17 21 21 C 1.43274 * 113.10362 * 50.33367 * 20 19 18 22 22 C 1.50421 * 118.88050 * 0.02562 * 17 15 14 23 23 H 1.08994 * 109.47260 * 299.99888 * 1 2 3 24 24 H 1.09005 * 109.47000 * 60.00333 * 1 2 3 25 25 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47428 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47130 * 300.00224 * 3 2 1 28 28 H 1.09003 * 109.47043 * 59.99678 * 3 2 1 29 29 H 1.08999 * 109.47130 * 180.02562 * 4 2 1 30 30 H 1.08996 * 109.47345 * 300.00059 * 4 2 1 31 31 H 0.97005 * 120.00048 * 180.02562 * 8 7 5 32 32 H 1.09012 * 109.46921 * 179.97438 * 13 2 1 33 33 H 1.08996 * 109.47090 * 60.00252 * 13 2 1 34 34 H 1.07994 * 118.71660 * 0.37251 * 18 17 15 35 35 H 1.08995 * 109.50874 * 224.52050 * 19 18 17 36 36 H 1.08997 * 109.06254 * 104.87024 * 19 18 17 37 37 H 1.08996 * 109.63697 * 171.44182 * 21 20 19 38 38 H 1.08999 * 109.63546 * 50.82855 * 21 20 19 39 39 H 1.09000 * 109.45563 * 283.37076 * 22 17 15 40 40 H 1.09000 * 109.45564 * 43.30996 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8527 9 14 1.2491 0.3994 -5.2572 10 1 2.2274 1.4410 -5.6608 11 1 1.0844 -0.5795 -6.3617 12 1 -0.0592 1.0368 -4.9616 13 6 2.0399 -0.7212 1.2492 14 8 1.5559 -0.0368 2.4347 15 6 1.9186 -0.5487 3.6279 16 8 2.6160 -1.5429 3.6759 17 6 1.4652 0.0915 4.8705 18 6 1.8296 -0.4322 6.0282 19 6 1.4118 0.1530 7.3478 20 8 0.9086 1.4774 7.1617 21 6 -0.0832 1.5623 6.1312 22 6 0.5969 1.3166 4.7817 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2493 31 1 2.8623 -1.8819 -4.7337 32 1 3.1301 -0.7216 1.2490 33 1 1.6766 -1.7489 1.2492 34 1 2.4553 -1.3124 6.0256 35 1 2.2690 0.1832 8.0203 36 1 0.6323 -0.4719 7.7836 37 1 -0.5350 2.5542 6.1386 38 1 -0.8501 0.8059 6.2977 39 1 1.2112 2.1790 4.5227 40 1 -0.1625 1.1684 4.0139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802250181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:36 Heat of formation + Delta-G solvation = -156.339874 kcal Electronic energy + Delta-G solvation = -20675.458120 eV Core-core repulsion = 17454.256372 eV Total energy + Delta-G solvation = -3221.201747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72240 -40.11179 -38.75400 -36.93969 -34.91999 -34.39961 -32.10254 -29.40720 -28.34817 -27.98087 -27.05866 -25.23548 -24.63698 -22.87703 -20.08463 -19.53932 -18.70650 -18.38954 -17.89324 -17.53683 -17.08170 -16.51224 -16.09239 -15.88706 -15.33941 -15.11477 -14.82340 -14.55918 -14.13648 -14.04664 -13.85995 -13.65712 -13.45228 -12.98776 -12.75574 -12.67997 -12.54707 -12.34196 -12.30220 -12.07366 -11.95102 -11.88784 -11.53196 -11.40402 -11.08403 -10.93005 -10.69810 -10.53801 -10.26333 -8.16730 -6.24808 -0.02696 1.42391 1.43087 1.53473 1.61236 1.77391 2.43551 2.92460 3.17938 3.47449 3.67141 3.79795 3.89237 3.89501 4.18612 4.22522 4.31204 4.42818 4.43701 4.54063 4.55981 4.71128 4.76413 4.81055 4.99001 4.99883 5.05402 5.11148 5.16429 5.33829 5.39924 5.42554 5.43637 5.48740 5.51861 5.72116 5.85787 6.10292 6.26299 6.61018 6.88938 7.43019 8.96065 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043534 B = 0.003588 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.020873 B = 7801.292258 C = 8217.619816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.119 4.119 4 C 0.040 3.960 5 C -0.515 4.515 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.089 3.911 14 O -0.337 6.337 15 C 0.490 3.510 16 O -0.550 6.550 17 C -0.165 4.165 18 C -0.090 4.090 19 C 0.086 3.914 20 O -0.393 6.393 21 C 0.059 3.941 22 C -0.110 4.110 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.066 0.934 29 H -0.012 1.012 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 6.669 22.012 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.055 4.055 3 C -0.176 4.176 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.183 1.183 13 C 0.015 3.985 14 O -0.253 6.253 15 C 0.338 3.662 16 O -0.443 6.443 17 C -0.166 4.166 18 C -0.108 4.108 19 C 0.010 3.990 20 O -0.312 6.312 21 C -0.017 4.017 22 C -0.147 4.147 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.089 6.444 21.955 23.678 hybrid contribution 0.434 -0.783 -1.700 1.921 sum -5.655 5.661 20.256 21.779 Atomic orbital electron populations 1.21640 0.93320 1.00892 1.01717 1.20631 0.97269 0.96537 0.91017 1.21644 0.99618 0.94657 1.01708 1.18986 0.94434 0.94336 0.91948 1.21536 1.30708 1.12187 0.90879 0.90905 1.25953 0.95563 0.95829 1.02735 1.70117 1.38663 1.24908 1.24242 0.85497 0.79225 0.78118 0.78545 1.20063 1.21395 1.18305 1.23150 0.98182 0.95440 0.81753 1.86555 1.69089 1.55168 1.14456 1.22144 0.76741 0.81691 0.85645 1.90820 1.37821 1.27062 1.88598 1.20318 1.05908 1.01367 0.89051 1.24169 0.93487 0.98209 0.94980 1.21872 1.01304 0.83765 0.92041 1.88132 1.58174 1.28475 1.56381 1.22860 0.89755 1.04571 0.84485 1.21050 0.98933 0.94225 1.00541 0.91378 0.92418 0.94337 0.94468 0.92354 0.91459 0.99337 0.99233 0.93046 0.92727 0.92550 0.84998 0.84444 0.88020 0.85968 0.91111 0.89522 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.08 71.98 0.58 -3.78 16 2 C -0.05 -2.22 0.61 -52.18 -0.03 -2.25 16 3 C -0.12 -4.43 8.08 71.98 0.58 -3.85 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.52 -28.03 7.65 25.60 0.20 -27.83 16 6 H 0.07 3.73 5.68 -2.91 -0.02 3.71 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 8 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 9 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 13 C 0.09 3.41 4.33 71.98 0.31 3.72 16 14 O -0.34 -11.15 8.29 -57.16 -0.47 -11.63 16 15 C 0.49 15.53 7.86 70.10 0.55 16.08 16 16 O -0.55 -20.71 15.85 19.71 0.31 -20.39 16 17 C -0.17 -3.80 5.86 -18.68 -0.11 -3.91 16 18 C -0.09 -1.64 9.58 24.54 0.24 -1.41 16 19 C 0.09 1.01 7.04 71.10 0.50 1.51 16 20 O -0.39 -6.20 10.83 -148.98 -1.61 -7.81 16 21 C 0.06 0.77 6.88 72.02 0.50 1.27 16 22 C -0.11 -1.97 5.73 29.80 0.17 -1.80 16 23 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 24 H 0.06 2.21 6.62 -2.38 -0.02 2.20 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 2.25 6.62 -2.38 -0.02 2.23 16 28 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.13 2.56 7.29 -2.91 -0.02 2.54 16 35 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.69 8.00 -2.39 -0.02 1.67 16 Total: -1.00 -68.72 327.69 5.61 -63.11 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.01 Total: 7.62 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.06 Total: -19.79 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.28 Total: -56.87 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.78 Total: -39.83 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.72 5.61 -63.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802250181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.228 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds