Wall clock time and date at job start Mon Mar 30 2020 07:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47163 * 239.99782 * 2 1 3 5 5 C 1.50709 * 109.46853 * 59.99972 * 4 2 1 6 6 H 1.08001 * 119.99695 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99753 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99760 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47196 * 60.00367 * 9 7 5 11 11 H 1.48507 * 109.46911 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47450 * 299.99918 * 9 7 5 13 13 C 1.53001 * 109.47141 * 120.00137 * 2 1 3 14 14 O 1.45202 * 109.46921 * 299.99595 * 13 2 1 15 15 C 1.34227 * 117.00113 * 179.97438 * 14 13 2 16 16 O 1.20829 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00323 * 180.02562 * 15 14 13 18 18 C 1.53786 * 113.61519 * 80.86360 * 17 15 14 19 19 C 1.54049 * 86.98426 * 140.01979 * 18 17 15 20 20 C 1.53002 * 113.62024 * 220.02020 * 19 18 17 21 21 C 1.53001 * 113.68855 * 89.12994 * 19 18 17 22 22 C 1.53781 * 113.61630 * 178.47308 * 17 15 14 23 23 H 1.09000 * 109.46704 * 300.00012 * 1 2 3 24 24 H 1.09001 * 109.46916 * 60.00233 * 1 2 3 25 25 H 1.09007 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46913 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47048 * 299.99687 * 3 2 1 28 28 H 1.09000 * 109.47260 * 59.99837 * 3 2 1 29 29 H 1.09001 * 109.47490 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47169 * 300.00043 * 4 2 1 31 31 H 0.97007 * 119.99485 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47404 * 179.97438 * 13 2 1 33 33 H 1.08997 * 109.47344 * 59.99863 * 13 2 1 34 34 H 1.09002 * 112.84782 * 309.66950 * 17 15 14 35 35 H 1.08992 * 113.61675 * 254.61723 * 18 17 15 36 36 H 1.09000 * 113.60973 * 25.52011 * 18 17 15 37 37 H 1.09001 * 109.47020 * 157.49242 * 20 19 18 38 38 H 1.08999 * 109.47143 * 277.50161 * 20 19 18 39 39 H 1.09000 * 109.46828 * 37.49888 * 20 19 18 40 40 H 1.08998 * 109.46824 * 322.47108 * 21 19 18 41 41 H 1.08998 * 109.47383 * 82.46486 * 21 19 18 42 42 H 1.08998 * 109.47263 * 202.47388 * 21 19 18 43 43 H 1.08999 * 113.61567 * 334.48200 * 22 17 15 44 44 H 1.08998 * 113.61196 * 105.38554 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4798 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2479 0.3985 -5.2572 10 1 1.7419 1.7989 -5.2571 11 1 1.7440 -0.3008 -6.4697 12 1 -0.2371 0.3973 -5.2573 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0367 2.4348 15 6 1.9163 -0.5471 3.6229 16 8 2.6133 -1.5329 3.6706 17 6 1.4514 0.1094 4.8972 18 6 0.0163 -0.2708 5.2981 19 6 0.5241 -0.3274 6.7513 20 6 -0.0565 -1.4902 7.5588 21 6 0.4324 1.0109 7.4871 22 6 1.9181 -0.6165 6.1700 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 -0.7217 -1.2491 30 1 1.6767 -1.7489 -1.2492 31 1 2.8616 -1.8824 -4.7337 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7489 1.2493 34 1 1.6393 1.1830 4.9131 35 1 -0.7114 0.5205 5.1188 36 1 -0.3039 -1.2376 4.9095 37 1 0.6042 -1.7172 8.3954 38 1 -1.0406 -1.2140 7.9374 39 1 -0.1467 -2.3677 6.9185 40 1 0.6720 1.8212 6.7985 41 1 -0.5792 1.1467 7.8698 42 1 1.1389 1.0185 8.3170 43 1 2.1168 -1.6776 6.0194 44 1 2.7247 -0.1039 6.6941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802834835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:13 Heat of formation + Delta-G solvation = -102.167523 kcal Electronic energy + Delta-G solvation = -20982.382215 eV Core-core repulsion = 17899.362652 eV Total energy + Delta-G solvation = -3083.019563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83548 -39.10151 -37.00532 -35.31190 -32.33413 -31.28143 -27.72475 -27.38936 -26.57591 -26.39428 -25.97345 -24.48000 -22.75343 -20.22805 -18.53187 -18.20515 -17.47543 -16.39357 -16.15558 -15.90988 -15.19192 -14.56743 -14.42730 -13.96809 -13.78398 -13.29868 -13.27101 -13.04857 -12.89351 -12.33750 -12.24106 -12.12729 -12.04580 -11.81172 -11.41364 -11.23250 -11.09475 -10.94570 -10.84874 -10.63309 -10.58318 -10.39257 -10.36135 -10.24533 -10.23391 -10.04261 -9.71352 -9.18609 -8.94280 -8.35906 -6.00234 -4.01455 2.40374 2.99797 3.33064 3.37916 3.39922 4.11877 4.24494 4.42630 4.45236 4.50216 4.89698 5.14217 5.17249 5.32370 5.34482 5.35315 5.50998 5.53440 5.54010 5.56086 5.56667 5.63159 5.73368 5.83399 5.84408 5.88023 6.05446 6.09334 6.21255 6.22612 6.40183 6.52966 6.66778 6.72235 6.87802 7.12103 7.13115 7.15316 7.61570 7.73680 7.97885 8.04197 8.40466 9.02708 9.61512 11.11440 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.045103 B = 0.003364 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.652399 B = 8321.044771 C = 8504.341605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 C -0.125 4.125 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.078 3.922 14 O -0.349 6.349 15 C 0.464 3.536 16 O -0.515 6.515 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.111 4.111 23 H 0.039 0.961 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 4.304 21.398 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.182 4.182 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 O -0.265 6.265 15 C 0.307 3.693 16 O -0.404 6.404 17 C -0.129 4.129 18 C -0.150 4.150 19 C -0.090 4.090 20 C -0.192 4.192 21 C -0.187 4.187 22 C -0.148 4.148 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.606 3.888 21.223 22.062 hybrid contribution -0.064 0.226 -1.123 1.147 sum -4.670 4.114 20.100 21.041 Atomic orbital electron populations 1.21708 0.94851 1.00872 1.00795 1.20807 0.96134 0.96192 0.92761 1.21708 0.99987 0.95764 1.00790 1.19120 0.96347 0.95267 0.89460 1.21124 1.31233 1.12155 0.90321 0.92125 1.25016 0.95291 0.95095 0.99112 1.69963 1.36941 1.23042 1.23591 0.86672 0.79181 0.79762 0.82479 1.20264 1.21383 1.20254 1.23482 0.98841 0.95892 0.81300 1.86502 1.69322 1.55736 1.14903 1.23493 0.77280 0.82604 0.85961 1.90636 1.35681 1.25916 1.88138 1.22473 0.99349 1.01705 0.89417 1.23076 0.94153 1.02780 0.94982 1.21839 0.96358 0.96464 0.94373 1.21720 1.00556 0.97119 0.99847 1.21619 1.02028 0.95003 1.00019 1.23066 0.96595 1.01947 0.93241 0.94198 0.91604 0.93832 0.93815 0.91598 0.94214 0.96388 0.96395 0.92961 0.91748 0.91776 0.86069 0.90064 0.89450 0.92392 0.92467 0.92343 0.92175 0.92176 0.92176 0.88525 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.08 37.16 0.30 -2.11 16 2 C -0.06 -1.21 0.61 -154.51 -0.09 -1.30 16 3 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.85 7.65 -34.44 -0.26 -14.11 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.29 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.08 1.49 4.32 37.16 0.16 1.65 16 14 O -0.35 -5.93 8.88 -39.25 -0.35 -6.28 16 15 C 0.46 7.21 7.48 36.00 0.27 7.48 16 16 O -0.51 -9.46 15.66 -18.75 -0.29 -9.75 16 17 C -0.11 -1.21 3.90 -90.96 -0.36 -1.57 16 18 C -0.11 -1.06 6.76 -25.77 -0.17 -1.24 16 19 C -0.09 -0.72 1.39 -153.55 -0.21 -0.94 16 20 C -0.14 -0.99 9.19 37.16 0.34 -0.65 16 21 C -0.13 -0.85 9.08 37.16 0.34 -0.51 16 22 C -0.11 -1.08 6.55 -25.92 -0.17 -1.25 16 23 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 24 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 25 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 28 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 33 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 34 H 0.12 1.14 7.66 -51.93 -0.40 0.74 16 35 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 36 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 40 H 0.06 0.39 7.35 -51.93 -0.38 0.00 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 1.09 7.41 -51.93 -0.39 0.71 16 44 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -30.40 349.76 -7.40 -37.80 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.97 Total: -3.05 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 0.23 Total: -14.41 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.64 Total: -16.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.40 -7.40 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802834835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.368 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds