Wall clock time and date at job start Mon Mar 30 2020 07:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47163 * 239.99782 * 2 1 3 5 5 C 1.50709 * 109.46853 * 59.99972 * 4 2 1 6 6 H 1.08001 * 119.99695 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99753 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99760 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47196 * 60.00367 * 9 7 5 11 11 H 1.48507 * 109.46911 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47450 * 299.99918 * 9 7 5 13 13 C 1.53001 * 109.47141 * 120.00137 * 2 1 3 14 14 O 1.45202 * 109.46921 * 299.99595 * 13 2 1 15 15 C 1.34227 * 117.00113 * 179.97438 * 14 13 2 16 16 O 1.20829 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00323 * 180.02562 * 15 14 13 18 18 C 1.53786 * 113.61519 * 80.86360 * 17 15 14 19 19 C 1.54049 * 86.98426 * 140.01979 * 18 17 15 20 20 C 1.53002 * 113.62024 * 220.02020 * 19 18 17 21 21 C 1.53001 * 113.68855 * 89.12994 * 19 18 17 22 22 C 1.53781 * 113.61630 * 178.47308 * 17 15 14 23 23 H 1.09000 * 109.46704 * 300.00012 * 1 2 3 24 24 H 1.09001 * 109.46916 * 60.00233 * 1 2 3 25 25 H 1.09007 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46913 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47048 * 299.99687 * 3 2 1 28 28 H 1.09000 * 109.47260 * 59.99837 * 3 2 1 29 29 H 1.09001 * 109.47490 * 180.02562 * 4 2 1 30 30 H 1.08997 * 109.47169 * 300.00043 * 4 2 1 31 31 H 0.97007 * 119.99485 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47404 * 179.97438 * 13 2 1 33 33 H 1.08997 * 109.47344 * 59.99863 * 13 2 1 34 34 H 1.09002 * 112.84782 * 309.66950 * 17 15 14 35 35 H 1.08992 * 113.61675 * 254.61723 * 18 17 15 36 36 H 1.09000 * 113.60973 * 25.52011 * 18 17 15 37 37 H 1.09001 * 109.47020 * 157.49242 * 20 19 18 38 38 H 1.08999 * 109.47143 * 277.50161 * 20 19 18 39 39 H 1.09000 * 109.46828 * 37.49888 * 20 19 18 40 40 H 1.08998 * 109.46824 * 322.47108 * 21 19 18 41 41 H 1.08998 * 109.47383 * 82.46486 * 21 19 18 42 42 H 1.08998 * 109.47263 * 202.47388 * 21 19 18 43 43 H 1.08999 * 113.61567 * 334.48200 * 22 17 15 44 44 H 1.08998 * 113.61196 * 105.38554 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4798 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2479 0.3985 -5.2572 10 1 1.7419 1.7989 -5.2571 11 1 1.7440 -0.3008 -6.4697 12 1 -0.2371 0.3973 -5.2573 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0367 2.4348 15 6 1.9163 -0.5471 3.6229 16 8 2.6133 -1.5329 3.6706 17 6 1.4514 0.1094 4.8972 18 6 0.0163 -0.2708 5.2981 19 6 0.5241 -0.3274 6.7513 20 6 -0.0565 -1.4902 7.5588 21 6 0.4324 1.0109 7.4871 22 6 1.9181 -0.6165 6.1700 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 -0.7217 -1.2491 30 1 1.6767 -1.7489 -1.2492 31 1 2.8616 -1.8824 -4.7337 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7489 1.2493 34 1 1.6393 1.1830 4.9131 35 1 -0.7114 0.5205 5.1188 36 1 -0.3039 -1.2376 4.9095 37 1 0.6042 -1.7172 8.3954 38 1 -1.0406 -1.2140 7.9374 39 1 -0.1467 -2.3677 6.9185 40 1 0.6720 1.8212 6.7985 41 1 -0.5792 1.1467 7.8698 42 1 1.1389 1.0185 8.3170 43 1 2.1168 -1.6776 6.0194 44 1 2.7247 -0.1039 6.6941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802834835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:12 Heat of formation + Delta-G solvation = -116.891897 kcal Electronic energy + Delta-G solvation = -20983.020712 eV Core-core repulsion = 17899.362652 eV Total energy + Delta-G solvation = -3083.658060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.95103 -40.15715 -38.54895 -36.85970 -34.41968 -32.03012 -29.34145 -28.24034 -28.11239 -27.97427 -26.74568 -25.78946 -24.54188 -21.40368 -19.91438 -19.24894 -18.69979 -18.34252 -17.53448 -17.24833 -16.52790 -16.01956 -15.34839 -15.30597 -14.99779 -14.77663 -14.31023 -14.21566 -13.95167 -13.86407 -13.71799 -13.48589 -12.96203 -12.77663 -12.73274 -12.66113 -12.46701 -12.32895 -12.28783 -12.14259 -11.97790 -11.86851 -11.85309 -11.47344 -11.38265 -11.21188 -11.06077 -10.97066 -10.86948 -10.52954 -8.16455 -6.24739 1.15831 1.42240 1.44878 1.52054 1.71710 2.43836 3.17947 3.36252 3.48957 3.61725 3.70851 3.90875 3.91358 4.01448 4.20269 4.33586 4.47249 4.54809 4.57262 4.65378 4.72736 4.73943 4.86284 4.89051 4.94627 5.00394 5.04701 5.07347 5.11740 5.18447 5.22194 5.25049 5.40782 5.43738 5.44100 5.46201 5.52017 5.52851 5.60036 5.72706 5.85931 6.26737 6.73445 6.88947 7.43048 8.96163 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.045103 B = 0.003364 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.652399 B = 8321.044771 C = 8504.341605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.056 4.056 3 C -0.118 4.118 4 C 0.041 3.959 5 C -0.517 4.517 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.088 3.912 14 O -0.345 6.345 15 C 0.460 3.540 16 O -0.549 6.549 17 C -0.109 4.109 18 C -0.113 4.113 19 C -0.077 4.077 20 C -0.136 4.136 21 C -0.128 4.128 22 C -0.114 4.114 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.067 0.933 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 6.602 22.872 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.176 4.176 4 C 0.004 3.996 5 C -0.555 4.555 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.014 3.986 14 O -0.260 6.260 15 C 0.305 3.695 16 O -0.439 6.439 17 C -0.128 4.128 18 C -0.150 4.150 19 C -0.077 4.077 20 C -0.194 4.194 21 C -0.185 4.185 22 C -0.152 4.152 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.164 0.836 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.147 6.203 22.720 24.340 hybrid contribution 0.443 -0.544 -1.501 1.657 sum -5.704 5.659 21.219 22.689 Atomic orbital electron populations 1.21633 0.93413 1.00798 1.01667 1.20635 0.97206 0.96595 0.91144 1.21636 0.99626 0.94612 1.01679 1.18978 0.94401 0.94264 0.92002 1.21515 1.30743 1.12276 0.90918 0.90927 1.25960 0.95528 0.95840 1.02743 1.70117 1.38620 1.24907 1.24309 0.85552 0.79012 0.78754 0.78069 1.19075 1.21497 1.19056 1.23091 0.98059 0.95310 0.82155 1.86498 1.69314 1.55413 1.14811 1.24549 0.76282 0.82218 0.86435 1.90628 1.37295 1.27591 1.88397 1.22779 1.00521 1.02711 0.86743 1.23132 0.93400 1.02618 0.95878 1.21805 0.94476 0.97709 0.93750 1.21733 1.01390 0.96467 0.99766 1.21640 1.02968 0.93762 1.00171 1.23099 0.98392 1.00705 0.92990 0.91425 0.92451 0.94451 0.94411 0.92450 0.91411 0.99357 0.99376 0.93034 0.92831 0.92909 0.83584 0.88416 0.90817 0.91739 0.91231 0.93501 0.91694 0.91167 0.91396 0.90674 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 8.08 71.98 0.58 -3.83 16 2 C -0.06 -2.29 0.61 -52.18 -0.03 -2.32 16 3 C -0.12 -4.42 8.08 71.98 0.58 -3.84 16 4 C 0.04 2.13 4.04 29.85 0.12 2.26 16 5 C -0.52 -28.30 7.65 25.60 0.20 -28.11 16 6 H 0.07 3.74 5.68 -2.91 -0.02 3.72 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 9 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 C 0.09 3.40 4.32 71.98 0.31 3.71 16 14 O -0.34 -11.34 8.88 -51.39 -0.46 -11.80 16 15 C 0.46 14.02 7.48 71.24 0.53 14.55 16 16 O -0.55 -20.50 15.66 21.96 0.34 -20.15 16 17 C -0.11 -2.17 3.90 -11.01 -0.04 -2.22 16 18 C -0.11 -1.89 6.76 31.21 0.21 -1.68 16 19 C -0.08 -1.05 1.39 -51.56 -0.07 -1.12 16 20 C -0.14 -1.74 9.19 71.98 0.66 -1.08 16 21 C -0.13 -1.22 9.08 71.98 0.65 -0.57 16 22 C -0.11 -2.06 6.55 31.12 0.20 -1.85 16 23 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 24 H 0.06 2.23 6.62 -2.39 -0.02 2.21 16 25 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 2.23 6.62 -2.39 -0.02 2.21 16 28 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 29 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 32 H 0.05 2.17 8.13 -2.39 -0.02 2.15 16 33 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 34 H 0.15 2.23 7.66 -2.39 -0.02 2.21 16 35 H 0.10 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.70 7.95 -2.39 -0.02 0.68 16 40 H 0.06 0.58 7.35 -2.39 -0.02 0.56 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 1.70 7.41 -2.39 -0.02 1.68 16 44 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -66.67 349.76 7.51 -59.16 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.94 Total: 9.90 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.37 Total: -25.85 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.11 Total: -31.95 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -66.67 7.51 -59.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802834835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.735 kcal (2) G-P(sol) polarization free energy of solvation -66.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds