Wall clock time and date at job start Mon Mar 30 2020 07:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48497 * 109.46808 * 269.99953 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99814 * 3 2 1 6 6 H 1.48505 * 109.47508 * 149.99964 * 3 2 1 7 7 C 1.37878 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46877 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46661 * 180.02562 * 12 11 10 14 14 O 1.20823 * 120.00508 * 359.97438 * 13 12 11 15 15 O 1.34237 * 119.99957 * 180.02562 * 13 12 11 16 16 C 1.45197 * 117.00270 * 180.02562 * 15 13 12 17 17 C 1.50474 * 109.62727 * 90.96146 * 16 15 13 18 18 C 1.54071 * 112.50056 * 213.85509 * 17 16 15 19 19 C 1.54063 * 112.81676 * 318.28858 * 18 17 16 20 20 C 1.50476 * 112.49675 * 318.27911 * 19 18 17 21 21 C 1.54245 * 108.51279 * 94.15799 * 20 19 18 22 22 C 1.45537 * 112.40728 * 280.00235 * 21 20 19 23 23 H 0.97002 * 120.00301 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46546 * 59.99171 * 9 7 2 25 25 H 1.08997 * 109.46804 * 299.99853 * 9 7 2 26 26 H 1.09000 * 109.46935 * 59.99794 * 10 9 7 27 27 H 1.08995 * 109.47201 * 299.99735 * 10 9 7 28 28 H 1.09006 * 109.47138 * 59.99885 * 11 10 9 29 29 H 1.08997 * 109.47095 * 300.00524 * 11 10 9 30 30 H 1.09002 * 109.46875 * 60.00572 * 12 11 10 31 31 H 1.08995 * 109.47201 * 299.99971 * 12 11 10 32 32 H 1.09004 * 109.78257 * 330.48229 * 16 15 13 33 33 H 1.08996 * 108.87573 * 334.63948 * 17 16 15 34 34 H 1.08998 * 108.87259 * 93.18082 * 17 16 15 35 35 H 1.08994 * 108.81493 * 197.42170 * 18 17 16 36 36 H 1.09007 * 108.81008 * 79.14598 * 18 17 16 37 37 H 1.09002 * 108.87867 * 197.50178 * 19 18 17 38 38 H 1.09000 * 108.87817 * 79.05963 * 19 18 17 39 39 H 1.08996 * 109.62739 * 213.86202 * 20 19 18 40 40 H 1.08997 * 109.62762 * 334.25700 * 20 19 18 41 41 H 1.09006 * 108.89114 * 40.75619 * 21 20 19 42 42 H 1.09001 * 108.89095 * 159.24371 * 21 20 19 43 43 H 1.08998 * 108.89158 * 182.69134 * 22 21 20 44 44 H 1.08997 * 108.89737 * 301.27941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7209 -7.4550 0.0005 14 8 0.5127 -7.4551 0.0015 15 8 2.3920 -8.6176 0.0005 16 6 1.6012 -9.8353 0.0000 17 6 1.3464 -10.2719 -1.4173 18 6 -0.0305 -10.9413 -1.5896 19 6 -0.3772 -11.9004 -0.4348 20 6 0.7979 -12.7391 -0.0104 21 6 1.5026 -12.0346 1.1669 22 6 2.3739 -10.9553 0.7264 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.8532 -5.0451 -0.8886 29 1 0.8538 -5.0445 0.8913 30 1 3.1017 -6.0922 0.8901 31 1 3.1004 -6.0923 -0.8899 32 1 0.6515 -9.6587 0.5050 33 1 1.3989 -9.4002 -2.0696 34 1 2.1206 -10.9800 -1.7127 35 1 -0.0347 -11.5011 -2.5248 36 1 -0.7943 -10.1654 -1.6435 37 1 -1.1841 -12.5599 -0.7543 38 1 -0.7196 -11.3154 0.4188 39 1 0.4505 -13.7224 0.3062 40 1 1.4912 -12.8466 -0.8446 41 1 0.7465 -11.6265 1.8377 42 1 2.0969 -12.7678 1.7122 43 1 2.8769 -10.5308 1.5952 44 1 3.1242 -11.3617 0.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805864735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:19 Heat of formation + Delta-G solvation = -137.120782 kcal Electronic energy + Delta-G solvation = -20359.713356 eV Core-core repulsion = 17275.178105 eV Total energy + Delta-G solvation = -3084.535251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73828 -38.76387 -36.30919 -34.94311 -32.83526 -32.68798 -31.67010 -29.81998 -26.13836 -25.01118 -24.75375 -22.66299 -20.99116 -20.54679 -20.00051 -19.62633 -17.62568 -16.53760 -16.30013 -16.16785 -15.43763 -15.12140 -14.69900 -14.42008 -14.34623 -14.08180 -13.41017 -13.17630 -12.88934 -12.67408 -12.47238 -12.22052 -11.73834 -11.72681 -11.55292 -11.42624 -11.07455 -10.99857 -10.83118 -10.78875 -10.58827 -10.54665 -10.50382 -10.44717 -10.37484 -10.23510 -9.63726 -9.27412 -9.01088 -8.31076 -5.95840 -3.98377 2.35432 2.69316 3.34197 3.40239 3.43554 4.22293 4.28299 4.48683 4.53461 4.75707 4.77684 4.82047 4.88605 5.00333 5.04736 5.13733 5.25435 5.30595 5.39729 5.45356 5.58051 5.58771 5.62513 5.74131 5.80859 5.82810 5.87308 5.88939 5.93275 6.02349 6.07828 6.09113 6.22782 6.47205 6.56905 6.78426 6.96691 7.17491 7.73011 7.88055 7.89881 8.05153 8.46900 9.09242 9.65411 11.15547 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.051197 B = 0.002623 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.776028 B =10672.969308 C =10917.749626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.458 3.542 14 O -0.505 6.505 15 O -0.359 6.359 16 C 0.089 3.911 17 C -0.133 4.133 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.112 4.112 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -26.700 -0.290 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.301 3.699 14 O -0.391 6.391 15 O -0.276 6.276 16 C 0.034 3.966 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.150 4.150 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.431 -26.618 -0.287 26.840 hybrid contribution 0.291 0.931 -0.066 0.978 sum 3.722 -25.687 -0.352 25.958 Atomic orbital electron populations 1.69971 1.06066 1.26541 1.50933 1.25042 0.94844 0.99261 0.95434 0.86602 0.79830 0.83544 0.78062 1.20696 1.21254 1.19895 1.21280 0.93015 0.91150 1.50429 0.92694 1.19098 0.94036 0.91240 0.97349 1.21648 0.99135 0.93582 1.00387 1.21570 0.97089 0.92723 1.03185 1.21604 0.99913 0.88071 1.05403 1.24193 0.87659 0.86133 0.71882 1.90652 1.15700 1.87751 1.45047 1.86576 1.42088 1.14879 1.84105 1.22414 0.95267 0.81739 0.97190 1.21751 0.98135 1.01118 0.96084 1.21841 0.96410 0.98496 0.98442 1.21402 0.98109 0.97896 0.98788 1.21391 0.97713 0.98456 0.98206 1.20460 0.99490 0.97373 0.98236 1.20502 0.98812 0.94506 1.01159 0.93029 0.96569 0.96542 0.93219 0.93224 0.91599 0.91576 0.87964 0.87988 0.89406 0.91363 0.91180 0.91815 0.91657 0.92033 0.91901 0.91757 0.91401 0.91787 0.91338 0.90928 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.11 -1.55 5.81 -27.88 -0.16 -1.71 16 13 C 0.46 6.76 7.87 36.00 0.28 7.05 16 14 O -0.50 -8.89 15.20 -18.75 -0.28 -9.18 16 15 O -0.36 -4.64 9.79 -39.28 -0.38 -5.03 16 16 C 0.09 0.97 2.13 -27.34 -0.06 0.91 16 17 C -0.13 -1.31 5.06 -27.43 -0.14 -1.45 16 18 C -0.11 -1.00 5.85 -25.62 -0.15 -1.15 16 19 C -0.12 -0.95 5.31 -27.44 -0.15 -1.09 16 20 C -0.12 -0.78 5.60 -27.34 -0.15 -0.94 16 21 C -0.12 -0.81 5.26 -29.60 -0.16 -0.97 16 22 C -0.11 -0.93 4.95 -29.60 -0.15 -1.08 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.07 1.23 8.10 -51.93 -0.42 0.80 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.09 6.00 -51.93 -0.31 0.78 16 33 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 34 H 0.07 0.59 6.63 -51.93 -0.34 0.24 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.53 6.63 -51.93 -0.34 0.19 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.43 6.99 -51.93 -0.36 0.07 16 41 H 0.06 0.47 7.47 -51.93 -0.39 0.08 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.54 7.47 -51.93 -0.39 0.15 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -31.94 345.24 -9.39 -41.33 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -8.01 Total: -4.20 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.63 Total: -18.23 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.67 Total: -14.20 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.94 -9.39 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805864735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.790 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds