Wall clock time and date at job start Mon Mar 30 2020 07:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48497 * 109.46808 * 269.99953 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99814 * 3 2 1 6 6 H 1.48505 * 109.47508 * 149.99964 * 3 2 1 7 7 C 1.37878 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46877 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46661 * 180.02562 * 12 11 10 14 14 O 1.20823 * 120.00508 * 359.97438 * 13 12 11 15 15 O 1.34237 * 119.99957 * 180.02562 * 13 12 11 16 16 C 1.45197 * 117.00270 * 180.02562 * 15 13 12 17 17 C 1.50474 * 109.62727 * 90.96146 * 16 15 13 18 18 C 1.54071 * 112.50056 * 213.85509 * 17 16 15 19 19 C 1.54063 * 112.81676 * 318.28858 * 18 17 16 20 20 C 1.50476 * 112.49675 * 318.27911 * 19 18 17 21 21 C 1.54245 * 108.51279 * 94.15799 * 20 19 18 22 22 C 1.45537 * 112.40728 * 280.00235 * 21 20 19 23 23 H 0.97002 * 120.00301 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46546 * 59.99171 * 9 7 2 25 25 H 1.08997 * 109.46804 * 299.99853 * 9 7 2 26 26 H 1.09000 * 109.46935 * 59.99794 * 10 9 7 27 27 H 1.08995 * 109.47201 * 299.99735 * 10 9 7 28 28 H 1.09006 * 109.47138 * 59.99885 * 11 10 9 29 29 H 1.08997 * 109.47095 * 300.00524 * 11 10 9 30 30 H 1.09002 * 109.46875 * 60.00572 * 12 11 10 31 31 H 1.08995 * 109.47201 * 299.99971 * 12 11 10 32 32 H 1.09004 * 109.78257 * 330.48229 * 16 15 13 33 33 H 1.08996 * 108.87573 * 334.63948 * 17 16 15 34 34 H 1.08998 * 108.87259 * 93.18082 * 17 16 15 35 35 H 1.08994 * 108.81493 * 197.42170 * 18 17 16 36 36 H 1.09007 * 108.81008 * 79.14598 * 18 17 16 37 37 H 1.09002 * 108.87867 * 197.50178 * 19 18 17 38 38 H 1.09000 * 108.87817 * 79.05963 * 19 18 17 39 39 H 1.08996 * 109.62739 * 213.86202 * 20 19 18 40 40 H 1.08997 * 109.62762 * 334.25700 * 20 19 18 41 41 H 1.09006 * 108.89114 * 40.75619 * 21 20 19 42 42 H 1.09001 * 108.89095 * 159.24371 * 21 20 19 43 43 H 1.08998 * 108.89158 * 182.69134 * 22 21 20 44 44 H 1.08997 * 108.89737 * 301.27941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7209 -7.4550 0.0005 14 8 0.5127 -7.4551 0.0015 15 8 2.3920 -8.6176 0.0005 16 6 1.6012 -9.8353 0.0000 17 6 1.3464 -10.2719 -1.4173 18 6 -0.0305 -10.9413 -1.5896 19 6 -0.3772 -11.9004 -0.4348 20 6 0.7979 -12.7391 -0.0104 21 6 1.5026 -12.0346 1.1669 22 6 2.3739 -10.9553 0.7264 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.8532 -5.0451 -0.8886 29 1 0.8538 -5.0445 0.8913 30 1 3.1017 -6.0922 0.8901 31 1 3.1004 -6.0923 -0.8899 32 1 0.6515 -9.6587 0.5050 33 1 1.3989 -9.4002 -2.0696 34 1 2.1206 -10.9800 -1.7127 35 1 -0.0347 -11.5011 -2.5248 36 1 -0.7943 -10.1654 -1.6435 37 1 -1.1841 -12.5599 -0.7543 38 1 -0.7196 -11.3154 0.4188 39 1 0.4505 -13.7224 0.3062 40 1 1.4912 -12.8466 -0.8446 41 1 0.7465 -11.6265 1.8377 42 1 2.0969 -12.7678 1.7122 43 1 2.8769 -10.5308 1.5952 44 1 3.1242 -11.3617 0.0482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805864735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:19 Heat of formation + Delta-G solvation = -153.039937 kcal Electronic energy + Delta-G solvation = -20360.403662 eV Core-core repulsion = 17275.178105 eV Total energy + Delta-G solvation = -3085.225557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79929 -39.60512 -37.39373 -36.61007 -34.66874 -33.49229 -32.52321 -31.48874 -27.83049 -25.83522 -25.63834 -24.28861 -22.06084 -21.67813 -21.42511 -20.37648 -18.75073 -18.38611 -17.58870 -17.37499 -16.51654 -16.27193 -16.08861 -15.53260 -15.40311 -14.82655 -14.55877 -14.23020 -14.17500 -13.96186 -13.58838 -13.48055 -13.35762 -13.11985 -12.83501 -12.41968 -12.34785 -12.30661 -12.20580 -12.19595 -11.70650 -11.60824 -11.45460 -11.43566 -11.40250 -11.28965 -11.16768 -11.14880 -11.02258 -10.55045 -8.19036 -6.30918 1.18960 1.40697 1.42775 1.53867 1.66230 2.42033 3.13995 3.49257 3.60634 3.68370 3.91481 4.00361 4.06871 4.08301 4.14415 4.17291 4.32049 4.39931 4.41905 4.50634 4.62821 4.76897 4.80395 4.84930 4.88348 4.96289 4.96903 5.12043 5.13272 5.15653 5.24457 5.24662 5.27974 5.31187 5.32321 5.38478 5.50616 5.53576 5.57865 5.77081 5.87751 6.25103 6.76090 6.87615 7.38754 8.93273 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.051197 B = 0.002623 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.776028 B =10672.969308 C =10917.749626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.096 4.096 11 C -0.100 4.100 12 C -0.103 4.103 13 C 0.461 3.539 14 O -0.542 6.542 15 O -0.354 6.354 16 C 0.080 3.920 17 C -0.132 4.132 18 C -0.114 4.114 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.106 4.106 23 H 0.263 0.737 24 H -0.014 1.014 25 H -0.014 1.014 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -27.920 -0.320 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.138 4.138 12 C -0.140 4.140 13 C 0.306 3.694 14 O -0.432 6.432 15 O -0.271 6.271 16 C 0.026 3.974 17 C -0.169 4.169 18 C -0.151 4.151 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.143 4.143 23 H 0.072 0.928 24 H 0.004 0.996 25 H 0.005 0.995 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.969 -27.864 -0.316 28.498 hybrid contribution -0.547 1.265 -0.062 1.379 sum 5.422 -26.599 -0.378 27.149 Atomic orbital electron populations 1.70124 1.08051 1.27761 1.51931 1.26082 0.95778 1.03719 0.94807 0.85390 0.78685 0.78102 0.78518 1.19724 1.20957 1.18333 1.21759 0.93776 0.92217 1.50186 0.91558 1.19055 0.94670 0.93658 0.94471 1.21439 0.97889 0.92343 1.01659 1.21347 0.97428 0.93312 1.01664 1.21497 0.98844 0.85772 1.07923 1.24333 0.87127 0.86994 0.70905 1.90650 1.17341 1.88289 1.46936 1.86556 1.42030 1.14987 1.83548 1.22704 0.94853 0.81643 0.98187 1.21760 0.99375 1.00884 0.94908 1.21842 0.95170 0.98272 0.99842 1.21405 0.99199 0.97764 0.97714 1.21389 0.97129 0.98696 0.98217 1.20476 0.99354 0.97313 0.98435 1.20519 0.98946 0.93753 1.01070 0.92846 0.99568 0.99523 0.91815 0.91827 0.93271 0.93208 0.85327 0.85412 0.91453 0.93291 0.89118 0.90269 0.93931 0.91013 0.93380 0.90289 0.90691 0.92717 0.89403 0.91023 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 11 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 12 C -0.10 -2.67 5.81 29.85 0.17 -2.50 16 13 C 0.46 13.48 7.87 71.23 0.56 14.04 16 14 O -0.54 -19.78 15.20 21.97 0.33 -19.45 16 15 O -0.35 -8.82 9.79 -51.48 -0.50 -9.33 16 16 C 0.08 1.72 2.13 30.20 0.06 1.78 16 17 C -0.13 -2.50 5.06 30.14 0.15 -2.35 16 18 C -0.11 -1.96 5.85 31.32 0.18 -1.78 16 19 C -0.12 -1.78 5.31 30.14 0.16 -1.62 16 20 C -0.12 -1.26 5.60 30.20 0.17 -1.09 16 21 C -0.12 -1.40 5.26 28.74 0.15 -1.25 16 22 C -0.11 -1.55 4.95 28.73 0.14 -1.41 16 23 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 24 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 25 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.05 1.88 8.10 -2.38 -0.02 1.86 16 29 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 30 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.07 1.73 6.00 -2.38 -0.01 1.71 16 33 H 0.05 1.11 7.92 -2.39 -0.02 1.09 16 34 H 0.09 1.33 6.63 -2.39 -0.02 1.31 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.83 6.63 -2.39 -0.02 0.81 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.73 6.99 -2.39 -0.02 0.71 16 41 H 0.05 0.76 7.47 -2.38 -0.02 0.74 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.03 7.47 -2.39 -0.02 1.01 16 Total: -1.00 -70.82 345.24 5.98 -64.84 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.94 Total: 8.93 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 2.90 Total: -33.13 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.28 Total: -58.72 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.17 Total: -28.77 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -70.82 5.98 -64.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805864735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.196 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds