Wall clock time and date at job start Mon Mar 30 2020 08:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.52998 * 109.47337 * 120.00455 * 2 1 3 5 5 C 1.52997 * 115.55621 * 174.34315 * 4 2 1 6 6 O 1.45206 * 109.46741 * 295.33642 * 5 4 2 7 7 C 1.34230 * 117.00000 * 180.02562 * 6 5 4 8 8 O 1.20825 * 119.99742 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47272 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47402 * 179.97438 * 10 9 7 12 12 C 1.52991 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46952 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00397 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99805 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99787 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47287 * 90.00228 * 17 15 13 19 19 H 1.48507 * 109.47119 * 210.00201 * 17 15 13 20 20 H 1.48509 * 109.47237 * 330.00140 * 17 15 13 21 21 C 1.53004 * 117.50089 * 28.66671 * 4 2 1 22 22 C 1.53008 * 117.49527 * 320.00782 * 4 2 1 23 23 H 1.09001 * 109.47284 * 59.94586 * 1 2 3 24 24 H 1.09001 * 109.47340 * 299.94315 * 1 2 3 25 25 H 1.09002 * 109.47162 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47351 * 239.99918 * 2 1 3 27 27 H 1.09001 * 109.47199 * 60.00560 * 3 2 1 28 28 H 1.09006 * 109.46865 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47403 * 299.99827 * 3 2 1 30 30 H 1.09004 * 109.47095 * 55.32351 * 5 4 2 31 31 H 1.08991 * 109.47840 * 175.33050 * 5 4 2 32 32 H 1.08999 * 109.46862 * 299.99820 * 9 7 6 33 33 H 1.08996 * 109.47096 * 59.99448 * 9 7 6 34 34 H 1.08997 * 109.47028 * 300.00261 * 10 9 7 35 35 H 1.09005 * 109.46659 * 59.99568 * 10 9 7 36 36 H 1.08999 * 109.47157 * 300.00638 * 11 10 9 37 37 H 1.09005 * 109.46788 * 60.00006 * 11 10 9 38 38 H 1.08999 * 109.47549 * 300.00362 * 12 11 10 39 39 H 1.08996 * 109.47178 * 60.00461 * 12 11 10 40 40 H 0.97004 * 120.00416 * 179.97438 * 16 15 13 41 41 H 1.09002 * 117.49128 * 0.02562 * 21 4 2 42 42 H 1.08987 * 117.50177 * 145.02423 * 21 4 2 43 43 H 1.09003 * 117.49686 * 214.98317 * 22 4 2 44 44 H 1.09003 * 117.49970 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5550 -0.9213 1.3235 6 8 3.9802 -1.8017 0.2498 7 6 5.2908 -2.0811 0.1738 8 8 6.0575 -1.6055 0.9774 9 6 5.8061 -2.9881 -0.9139 10 6 7.3222 -3.1400 -0.7757 11 6 7.8452 -4.0613 -1.8796 12 6 9.3612 -4.2137 -1.7409 13 6 9.8764 -5.1207 -2.8286 14 1 9.1912 -5.5455 -3.5472 15 6 11.2228 -5.4072 -2.9071 16 7 12.0574 -4.8895 -2.0324 17 14 11.8615 -6.5309 -4.2557 18 1 12.2181 -5.7204 -5.4478 19 1 13.0650 -7.2528 -3.7700 20 1 10.8093 -7.5129 -4.6216 21 6 1.1529 -1.8167 1.8442 22 6 1.2951 -0.4723 2.5623 23 1 -0.3634 0.5147 -0.8895 24 1 -0.3634 0.5129 0.8905 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 4.0542 0.0424 1.2221 31 1 3.8162 -1.3666 2.2834 32 1 5.3330 -3.9661 -0.8258 33 1 5.5716 -2.5575 -1.8874 34 1 7.7949 -2.1618 -0.8640 35 1 7.5569 -3.5704 0.1979 36 1 7.3724 -5.0394 -1.7909 37 1 7.6104 -3.6312 -2.8533 38 1 9.8344 -3.2358 -1.8294 39 1 9.5956 -4.6440 -0.7673 40 1 13.0046 -5.0914 -2.0873 41 1 0.2060 -2.0237 1.3454 42 1 1.6485 -2.6796 2.2888 43 1 1.8845 -0.4514 3.4790 44 1 0.4420 0.2057 2.5363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805983212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:12 Heat of formation + Delta-G solvation = -101.574717 kcal Electronic energy + Delta-G solvation = -20036.424237 eV Core-core repulsion = 16953.430380 eV Total energy + Delta-G solvation = -3082.993857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56591 -39.20598 -36.38895 -34.94975 -33.27579 -32.67237 -30.11079 -28.69122 -26.94728 -25.62717 -23.16953 -22.88189 -22.41444 -20.48319 -20.00461 -18.74515 -17.41870 -16.95487 -16.52204 -16.16202 -15.72491 -14.95677 -14.62802 -14.51994 -14.37782 -13.48006 -13.19806 -13.01705 -12.93514 -12.60850 -12.40554 -12.19737 -12.02059 -11.74294 -11.65335 -11.46162 -11.37323 -11.00042 -10.97473 -10.89391 -10.58707 -10.54780 -10.45741 -10.44140 -10.27409 -9.99073 -9.63888 -9.27576 -9.01232 -8.31100 -5.95869 -3.98413 2.33437 2.56718 3.34188 3.40231 3.43495 3.51021 4.24401 4.32064 4.39624 4.48867 4.55616 4.79034 4.93521 4.99220 5.10006 5.18242 5.25775 5.28593 5.31097 5.34016 5.38760 5.39698 5.48639 5.55686 5.58483 5.72002 5.76000 5.79754 5.89495 6.00939 6.06525 6.07387 6.21547 6.44175 6.50642 6.78092 6.96305 7.17325 7.72956 7.86960 7.87942 8.05082 8.46822 9.09206 9.65358 11.15492 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.043706 B = 0.002524 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.486209 B =11092.548434 C =11229.790613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.058 4.058 3 C -0.147 4.147 4 C -0.124 4.124 5 C 0.103 3.897 6 O -0.356 6.356 7 C 0.459 3.541 8 O -0.508 6.508 9 C -0.111 4.111 10 C -0.108 4.108 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.169 4.169 22 C -0.165 4.165 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.138 10.246 6.660 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 C -0.204 4.204 4 C -0.124 4.124 5 C 0.029 3.971 6 O -0.273 6.273 7 C 0.302 3.698 8 O -0.395 6.395 9 C -0.149 4.149 10 C -0.146 4.146 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.205 4.205 22 C -0.202 4.202 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -24.740 10.415 6.978 27.735 hybrid contribution 0.548 -0.510 -0.520 0.912 sum -24.191 9.905 6.458 26.926 Atomic orbital electron populations 1.22004 0.95127 1.01976 1.01849 1.20550 0.95303 0.95620 0.96176 1.21826 1.01269 0.95591 1.01711 1.21417 0.91469 1.03791 0.95701 1.22417 0.92165 0.93488 0.89011 1.86522 1.27157 1.62372 1.51279 1.24218 0.79833 0.79974 0.85779 1.90669 1.57295 1.50240 1.41285 1.21598 0.98910 0.98533 0.95843 1.21574 0.90193 1.01673 1.01162 1.21646 1.00052 0.97130 0.95909 1.19096 0.88525 0.97011 0.97098 1.21277 0.92600 1.28745 1.13254 0.92691 1.25043 0.97153 0.96289 0.96101 1.69972 1.03175 1.44630 1.35723 0.86602 0.78421 0.80875 0.82131 1.20697 1.21258 1.19896 1.23164 1.01604 0.92516 1.03245 1.23101 1.02405 1.00057 0.94588 0.92443 0.92509 0.92193 0.90017 0.92649 0.92616 0.92479 0.90762 0.91314 0.87934 0.87932 0.91570 0.91586 0.93212 0.93209 0.96558 0.96548 0.93029 0.87941 0.88664 0.88668 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.23 37.16 0.31 -0.66 16 2 C -0.06 -0.46 2.95 -90.62 -0.27 -0.73 16 3 C -0.15 -1.10 9.03 37.16 0.34 -0.77 16 4 C -0.12 -1.05 1.78 -154.50 -0.27 -1.33 16 5 C 0.10 1.12 5.12 37.16 0.19 1.31 16 6 O -0.36 -4.54 10.12 -39.26 -0.40 -4.94 16 7 C 0.46 6.73 7.96 36.00 0.29 7.02 16 8 O -0.51 -9.02 15.73 -18.75 -0.29 -9.31 16 9 C -0.11 -1.52 5.81 -27.88 -0.16 -1.68 16 10 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 11 C -0.11 -2.24 5.15 -26.74 -0.14 -2.37 16 12 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 13 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.17 -1.28 9.52 -26.69 -0.25 -1.53 16 22 C -0.16 -1.13 9.56 -26.69 -0.26 -1.38 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.32 6.39 -51.93 -0.33 -0.01 16 25 H 0.06 0.37 6.31 -51.93 -0.33 0.04 16 26 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.47 7.01 -51.93 -0.36 0.11 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.83 7.00 -51.93 -0.36 0.46 16 31 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.10 0.68 6.07 -51.93 -0.31 0.36 16 42 H 0.09 0.76 8.14 -51.94 -0.42 0.34 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.59 6.46 -51.93 -0.34 0.25 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -32.09 356.40 -8.42 -40.51 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -7.91 Total: -4.20 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -0.90 Total: -17.53 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.69 Total: -14.25 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.09 -8.42 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805983212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.068 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds