Wall clock time and date at job start Mon Mar 30 2020 08:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.52998 * 109.47337 * 120.00455 * 2 1 3 5 5 C 1.52997 * 115.55621 * 174.34315 * 4 2 1 6 6 O 1.45206 * 109.46741 * 295.33642 * 5 4 2 7 7 C 1.34230 * 117.00000 * 180.02562 * 6 5 4 8 8 O 1.20825 * 119.99742 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47272 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47402 * 179.97438 * 10 9 7 12 12 C 1.52991 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46952 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00397 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99805 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99787 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47287 * 90.00228 * 17 15 13 19 19 H 1.48507 * 109.47119 * 210.00201 * 17 15 13 20 20 H 1.48509 * 109.47237 * 330.00140 * 17 15 13 21 21 C 1.53004 * 117.50089 * 28.66671 * 4 2 1 22 22 C 1.53008 * 117.49527 * 320.00782 * 4 2 1 23 23 H 1.09001 * 109.47284 * 59.94586 * 1 2 3 24 24 H 1.09001 * 109.47340 * 299.94315 * 1 2 3 25 25 H 1.09002 * 109.47162 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47351 * 239.99918 * 2 1 3 27 27 H 1.09001 * 109.47199 * 60.00560 * 3 2 1 28 28 H 1.09006 * 109.46865 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47403 * 299.99827 * 3 2 1 30 30 H 1.09004 * 109.47095 * 55.32351 * 5 4 2 31 31 H 1.08991 * 109.47840 * 175.33050 * 5 4 2 32 32 H 1.08999 * 109.46862 * 299.99820 * 9 7 6 33 33 H 1.08996 * 109.47096 * 59.99448 * 9 7 6 34 34 H 1.08997 * 109.47028 * 300.00261 * 10 9 7 35 35 H 1.09005 * 109.46659 * 59.99568 * 10 9 7 36 36 H 1.08999 * 109.47157 * 300.00638 * 11 10 9 37 37 H 1.09005 * 109.46788 * 60.00006 * 11 10 9 38 38 H 1.08999 * 109.47549 * 300.00362 * 12 11 10 39 39 H 1.08996 * 109.47178 * 60.00461 * 12 11 10 40 40 H 0.97004 * 120.00416 * 179.97438 * 16 15 13 41 41 H 1.09002 * 117.49128 * 0.02562 * 21 4 2 42 42 H 1.08987 * 117.50177 * 145.02423 * 21 4 2 43 43 H 1.09003 * 117.49686 * 214.98317 * 22 4 2 44 44 H 1.09003 * 117.49970 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5550 -0.9213 1.3235 6 8 3.9802 -1.8017 0.2498 7 6 5.2908 -2.0811 0.1738 8 8 6.0575 -1.6055 0.9774 9 6 5.8061 -2.9881 -0.9139 10 6 7.3222 -3.1400 -0.7757 11 6 7.8452 -4.0613 -1.8796 12 6 9.3612 -4.2137 -1.7409 13 6 9.8764 -5.1207 -2.8286 14 1 9.1912 -5.5455 -3.5472 15 6 11.2228 -5.4072 -2.9071 16 7 12.0574 -4.8895 -2.0324 17 14 11.8615 -6.5309 -4.2557 18 1 12.2181 -5.7204 -5.4478 19 1 13.0650 -7.2528 -3.7700 20 1 10.8093 -7.5129 -4.6216 21 6 1.1529 -1.8167 1.8442 22 6 1.2951 -0.4723 2.5623 23 1 -0.3634 0.5147 -0.8895 24 1 -0.3634 0.5129 0.8905 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 4.0542 0.0424 1.2221 31 1 3.8162 -1.3666 2.2834 32 1 5.3330 -3.9661 -0.8258 33 1 5.5716 -2.5575 -1.8874 34 1 7.7949 -2.1618 -0.8640 35 1 7.5569 -3.5704 0.1979 36 1 7.3724 -5.0394 -1.7909 37 1 7.6104 -3.6312 -2.8533 38 1 9.8344 -3.2358 -1.8294 39 1 9.5956 -4.6440 -0.7673 40 1 13.0046 -5.0914 -2.0873 41 1 0.2060 -2.0237 1.3454 42 1 1.6485 -2.6796 2.2888 43 1 1.8845 -0.4514 3.4790 44 1 0.4420 0.2057 2.5363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805983212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:11 Heat of formation + Delta-G solvation = -117.439963 kcal Electronic energy + Delta-G solvation = -20037.112206 eV Core-core repulsion = 16953.430380 eV Total energy + Delta-G solvation = -3083.681826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64356 -39.94863 -37.52952 -36.61306 -34.66631 -33.85074 -31.77412 -29.61420 -27.87004 -27.13217 -24.52094 -23.71158 -23.19830 -22.02197 -21.43341 -19.42879 -18.60598 -18.36557 -17.88430 -17.49573 -16.69199 -16.45944 -16.09492 -15.50348 -15.19357 -14.59290 -14.54072 -14.10540 -13.86634 -13.73003 -13.56297 -13.53422 -13.28980 -12.88960 -12.83061 -12.59117 -12.36066 -12.20889 -12.19766 -12.11310 -11.91077 -11.84026 -11.69447 -11.53057 -11.39426 -11.29755 -11.09528 -10.98761 -10.63049 -10.54700 -8.18751 -6.30569 1.16963 1.40911 1.42949 1.53932 1.57819 2.42226 2.85250 3.14272 3.54093 3.64326 3.69519 3.84340 3.95891 4.07432 4.07803 4.23089 4.32625 4.35449 4.46359 4.59490 4.62827 4.64586 4.73143 4.77304 4.84974 4.85675 4.94321 4.97666 5.04685 5.13514 5.13875 5.24691 5.26579 5.31906 5.32675 5.43175 5.45669 5.50365 5.56589 5.77541 5.88135 6.25455 6.73094 6.87967 7.39055 8.93502 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.043706 B = 0.002524 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.486209 B =11092.548434 C =11229.790613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.099 3.901 6 O -0.350 6.350 7 C 0.463 3.537 8 O -0.546 6.546 9 C -0.102 4.102 10 C -0.100 4.100 11 C -0.096 4.096 12 C 0.018 3.982 13 C -0.541 4.541 14 H 0.066 0.934 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.969 3.031 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.259 1.259 21 C -0.168 4.168 22 C -0.151 4.151 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.063 0.937 38 H -0.014 1.014 39 H -0.014 1.014 40 H 0.263 0.737 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.470 9.718 5.547 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.137 4.137 5 C 0.025 3.975 6 O -0.267 6.267 7 C 0.308 3.692 8 O -0.436 6.436 9 C -0.139 4.139 10 C -0.138 4.138 11 C -0.133 4.133 12 C -0.019 4.019 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.183 1.183 21 C -0.205 4.205 22 C -0.188 4.188 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.005 0.995 39 H 0.005 0.995 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.111 9.889 5.856 29.447 hybrid contribution 1.267 -0.302 -0.115 1.308 sum -25.844 9.587 5.741 28.156 Atomic orbital electron populations 1.21974 0.93570 1.02408 1.02601 1.20533 0.96552 0.95361 0.95142 1.21818 1.00258 0.95728 1.02473 1.21412 0.89837 1.05286 0.97137 1.22600 0.94017 0.92682 0.88194 1.86515 1.25874 1.62451 1.51829 1.24355 0.80152 0.79388 0.85282 1.90663 1.58305 1.51850 1.42831 1.21488 0.95728 0.99998 0.96705 1.21354 0.93269 0.99915 0.99270 1.21437 0.95656 0.98683 0.97553 1.19054 0.92820 0.94813 0.95181 1.21757 0.93281 1.29029 1.13862 0.91566 1.26079 0.97547 0.97990 0.98768 1.70124 1.03609 1.46232 1.37878 0.85393 0.77896 0.78748 0.78673 1.19729 1.20972 1.18345 1.23232 1.01676 0.92452 1.03132 1.23200 1.02228 0.99749 0.93606 0.91955 0.91519 0.91902 0.91563 0.91809 0.94180 0.91795 0.91410 0.91783 0.85334 0.85347 0.93183 0.93191 0.91828 0.91811 0.99535 0.99520 0.92853 0.86693 0.89297 0.88498 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.23 71.98 0.59 -0.93 16 2 C -0.06 -0.83 2.95 -10.80 -0.03 -0.86 16 3 C -0.15 -2.03 9.03 71.98 0.65 -1.38 16 4 C -0.14 -2.16 1.78 -52.18 -0.09 -2.25 16 5 C 0.10 2.13 5.12 71.98 0.37 2.50 16 6 O -0.35 -8.67 10.12 -51.42 -0.52 -9.19 16 7 C 0.46 13.36 7.96 71.24 0.57 13.92 16 8 O -0.55 -19.79 15.73 21.97 0.35 -19.45 16 9 C -0.10 -2.61 5.81 29.85 0.17 -2.44 16 10 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 11 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 12 C 0.02 1.00 4.97 29.85 0.15 1.15 16 13 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 14 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 15 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 16 N -0.94 -58.88 13.29 21.45 0.28 -58.60 16 17 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 C -0.17 -2.24 9.52 30.62 0.29 -1.95 16 22 C -0.15 -1.77 9.56 30.62 0.29 -1.48 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.07 0.56 6.39 -2.39 -0.02 0.54 16 25 H 0.06 0.61 6.31 -2.39 -0.02 0.60 16 26 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 0.67 7.01 -2.38 -0.02 0.66 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 1.54 7.00 -2.38 -0.02 1.52 16 31 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 32 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.05 1.90 8.10 -2.38 -0.02 1.88 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.11 1.24 6.07 -2.39 -0.01 1.23 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.12 1.02 6.46 -2.39 -0.02 1.00 16 Total: -1.00 -70.46 356.40 7.03 -63.43 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.94 Total: 8.77 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.95 Total: -31.75 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.28 Total: -58.60 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.17 Total: -28.63 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -70.46 7.03 -63.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805983212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.012 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds