Wall clock time and date at job start Mon Mar 30 2020 07:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 112.85153 * 2 1
4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3
5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1
6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2
7 7 O 1.45200 * 109.47003 * 176.52637 * 6 5 4
8 8 C 1.34222 * 117.00094 * 180.02562 * 7 6 5
9 9 O 1.20821 * 120.00135 * 359.97438 * 8 7 6
10 10 C 1.50703 * 119.99985 * 179.97438 * 8 7 6
11 11 C 1.53005 * 109.47035 * 179.97438 * 10 8 7
12 12 C 1.53000 * 109.47151 * 180.02562 * 11 10 8
13 13 C 1.52995 * 109.47497 * 180.02562 * 12 11 10
14 14 C 1.50693 * 109.47530 * 179.97438 * 13 12 11
15 15 H 1.08003 * 119.99746 * 0.02562 * 14 13 12
16 16 C 1.37877 * 120.00148 * 179.97438 * 14 13 12
17 17 N 1.31512 * 119.99772 * 0.02562 * 16 14 13
18 18 Si 1.86805 * 119.99948 * 180.02562 * 16 14 13
19 19 H 1.48491 * 109.47347 * 89.99874 * 18 16 14
20 20 H 1.48507 * 109.46923 * 210.00024 * 18 16 14
21 21 H 1.48502 * 109.46836 * 329.99673 * 18 16 14
22 22 C 1.53777 * 87.17394 * 25.38935 * 5 4 2
23 23 H 1.09007 * 109.47013 * 288.80594 * 1 2 3
24 24 H 1.08998 * 109.47014 * 48.80014 * 1 2 3
25 25 H 1.08998 * 109.47348 * 168.80291 * 1 2 3
26 26 H 1.08999 * 109.46898 * 191.19448 * 3 2 1
27 27 H 1.08997 * 109.47016 * 311.19487 * 3 2 1
28 28 H 1.08996 * 109.46824 * 71.19568 * 3 2 1
29 29 H 1.08992 * 113.61445 * 334.56320 * 4 2 1
30 30 H 1.09001 * 113.61082 * 203.66197 * 4 2 1
31 31 H 1.08998 * 113.61602 * 270.79563 * 5 4 2
32 32 H 1.08993 * 109.46955 * 296.52894 * 6 5 4
33 33 H 1.09000 * 109.47050 * 56.52723 * 6 5 4
34 34 H 1.08994 * 109.47313 * 299.99702 * 10 8 7
35 35 H 1.09006 * 109.46774 * 60.00058 * 10 8 7
36 36 H 1.08994 * 109.47204 * 300.00230 * 11 10 8
37 37 H 1.08998 * 109.47065 * 60.00332 * 11 10 8
38 38 H 1.09011 * 109.47087 * 300.00451 * 12 11 10
39 39 H 1.09003 * 109.47442 * 59.99921 * 12 11 10
40 40 H 1.08999 * 109.46646 * 300.00423 * 13 12 11
41 41 H 1.09003 * 109.47168 * 59.99351 * 13 12 11
42 42 H 0.97004 * 119.99446 * 180.02562 * 17 16 14
43 43 H 1.08999 * 113.61825 * 89.16304 * 22 5 4
44 44 H 1.09009 * 113.61337 * 220.05752 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1242 1.4099 0.0000
4 6 2.1460 -0.9281 1.0603
5 6 2.0929 -2.0426 0.0020
6 6 3.3264 -2.9479 0.0029
7 8 3.1466 -4.0118 -0.9687
8 6 4.1459 -4.8993 -1.0924
9 8 5.1382 -4.7906 -0.4117
10 6 4.0302 -6.0314 -2.0803
11 6 5.2953 -6.8899 -2.0227
12 6 5.1782 -8.0390 -3.0261
13 6 6.4430 -8.8979 -2.9681
14 6 6.3273 -10.0299 -3.9559
15 1 5.4404 -10.1269 -4.5647
16 6 7.3540 -10.9413 -4.0834
17 7 8.4341 -10.8229 -3.3424
18 14 7.2108 -12.3442 -5.3085
19 1 7.7614 -11.9151 -6.6191
20 1 7.9749 -13.5162 -4.8104
21 1 5.7824 -12.7167 -5.4697
22 6 2.1448 -0.9318 -1.0601
23 1 -0.3633 0.3313 0.9729
24 1 -0.3633 0.6769 -0.7732
25 1 -0.3634 -1.0081 -0.1995
26 1 3.1943 1.3532 -0.1995
27 1 1.6416 2.0076 -0.7733
28 1 1.9600 1.8733 0.9728
29 1 1.4945 -1.1068 1.9156
30 1 3.1590 -0.6487 1.3496
31 1 1.1573 -2.6019 0.0035
32 1 4.2073 -2.3618 -0.2587
33 1 3.4590 -3.3802 0.9947
34 1 3.1635 -6.6438 -1.8314
35 1 3.9121 -5.6260 -3.0853
36 1 6.1618 -6.2774 -2.2718
37 1 5.4138 -7.2953 -1.0178
38 1 4.3115 -8.6517 -2.7773
39 1 5.0598 -7.6333 -4.0309
40 1 7.3097 -8.2854 -3.2165
41 1 6.5609 -9.3035 -1.9632
42 1 9.1565 -11.4639 -3.4324
43 1 3.1575 -0.6534 -1.3517
44 1 1.4923 -1.1135 -1.9143
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000805989642.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:57:09
Heat of formation + Delta-G solvation = -111.459892 kcal
Electronic energy + Delta-G solvation = -19681.575248 eV
Core-core repulsion = 16598.152738 eV
Total energy + Delta-G solvation = -3083.422511 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.64317 -39.81993 -36.57199 -34.94732 -32.69175 -32.00416 -29.93351 -27.85193
-27.30449 -26.12721 -25.57537 -22.73677 -21.12002 -20.51763 -20.00101 -18.66250
-17.43762 -16.72542 -16.34942 -16.15459 -15.47135 -14.87356 -14.68536 -14.49989
-14.39576 -13.78571 -13.23294 -13.10496 -13.05702 -12.67887 -12.33968 -12.21859
-12.17113 -11.80385 -11.66655 -11.65823 -11.40375 -10.99862 -10.93812 -10.79325
-10.59175 -10.53921 -10.49444 -10.44815 -10.35250 -10.17873 -9.63635 -9.27295
-9.01039 -8.30914 -5.95698 -3.98199 2.34319 2.68816 3.34293 3.40304
3.43625 4.04782 4.18433 4.25156 4.34773 4.49012 4.74553 4.86030
4.97316 5.03403 5.16089 5.22574 5.25750 5.29810 5.33311 5.35664
5.39566 5.39809 5.48227 5.50442 5.52396 5.64743 5.74176 5.77422
5.81268 6.03309 6.07759 6.14675 6.22291 6.45254 6.51610 6.78407
6.96628 7.17548 7.73119 7.87764 7.88110 8.05267 8.47034 9.09364
9.65507 11.15615
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.060792 B = 0.002240 C = 0.002205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 460.473686 B =12499.507608 C =12692.738980
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.091 4.091
3 C -0.136 4.136
4 C -0.123 4.123
5 C -0.110 4.110
6 C 0.075 3.925
7 O -0.360 6.360
8 C 0.459 3.541
9 O -0.508 6.508
10 C -0.112 4.112
11 C -0.108 4.108
12 C -0.110 4.110
13 C 0.019 3.981
14 C -0.520 4.520
15 H 0.055 0.945
16 C 0.055 3.945
17 N -0.895 5.895
18 Si 0.892 3.108
19 H -0.281 1.281
20 H -0.287 1.287
21 H -0.274 1.274
22 C -0.126 4.126
23 H 0.057 0.943
24 H 0.058 0.942
25 H 0.059 0.941
26 H 0.056 0.944
27 H 0.055 0.945
28 H 0.055 0.945
29 H 0.072 0.928
30 H 0.084 0.916
31 H 0.101 0.899
32 H 0.069 0.931
33 H 0.069 0.931
34 H 0.102 0.898
35 H 0.102 0.898
36 H 0.065 0.935
37 H 0.065 0.935
38 H 0.049 0.951
39 H 0.049 0.951
40 H 0.016 0.984
41 H 0.016 0.984
42 H 0.260 0.740
43 H 0.082 0.918
44 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.161 23.171 7.464 29.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.091 4.091
3 C -0.193 4.193
4 C -0.160 4.160
5 C -0.128 4.128
6 C 0.001 3.999
7 O -0.278 6.278
8 C 0.302 3.698
9 O -0.395 6.395
10 C -0.149 4.149
11 C -0.146 4.146
12 C -0.148 4.148
13 C -0.018 4.018
14 C -0.559 4.559
15 H 0.073 0.927
16 C -0.146 4.146
17 N -0.535 5.535
18 Si 0.720 3.280
19 H -0.207 1.207
20 H -0.213 1.213
21 H -0.199 1.199
22 C -0.163 4.163
23 H 0.076 0.924
24 H 0.077 0.923
25 H 0.078 0.922
26 H 0.075 0.925
27 H 0.074 0.926
28 H 0.074 0.926
29 H 0.091 0.909
30 H 0.103 0.897
31 H 0.120 0.880
32 H 0.087 0.913
33 H 0.087 0.913
34 H 0.121 0.879
35 H 0.121 0.879
36 H 0.084 0.916
37 H 0.084 0.916
38 H 0.068 0.932
39 H 0.068 0.932
40 H 0.034 0.966
41 H 0.035 0.965
42 H 0.070 0.930
43 H 0.101 0.899
44 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -15.698 23.152 7.730 29.021
hybrid contribution 0.167 -0.764 -0.510 0.934
sum -15.531 22.387 7.220 28.188
Atomic orbital electron populations
1.21607 0.93032 1.02117 1.01860 1.21807 0.95697 0.94547 0.97016
1.21728 1.00568 0.95318 1.01696 1.23067 1.01619 0.94840 0.96481
1.22566 0.98209 0.93985 0.98082 1.23048 0.98327 0.87005 0.91506
1.86523 1.45579 1.37801 1.57892 1.24203 0.80342 0.82429 0.82839
1.90665 1.31144 1.73483 1.44181 1.21602 1.02928 0.92906 0.97501
1.21572 0.94592 0.96871 1.01559 1.21651 1.01236 0.95223 0.96647
1.19099 0.91622 0.93863 0.97168 1.21274 1.02664 1.10609 1.21312
0.92689 1.25049 0.95459 0.98027 0.96098 1.69977 1.06820 1.36780
1.39886 0.86597 0.78049 0.81935 0.81420 1.20705 1.21262 1.19903
1.23200 1.01419 0.95000 0.96688 0.92375 0.92313 0.92232 0.92481
0.92555 0.92562 0.90936 0.89717 0.88047 0.91285 0.91315 0.87937
0.87939 0.91586 0.91577 0.93209 0.93209 0.96555 0.96541 0.93042
0.89916 0.90997
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.73 9.07 37.16 0.34 -0.40 16
2 C -0.09 -0.58 1.39 -153.60 -0.21 -0.79 16
3 C -0.14 -0.79 9.20 37.16 0.34 -0.45 16
4 C -0.12 -0.82 6.79 -25.92 -0.18 -1.00 16
5 C -0.11 -0.89 3.66 -89.81 -0.33 -1.22 16
6 C 0.08 0.80 5.29 37.16 0.20 0.99 16
7 O -0.36 -4.62 10.22 -39.24 -0.40 -5.02 16
8 C 0.46 6.78 7.96 36.01 0.29 7.07 16
9 O -0.51 -9.07 15.73 -18.75 -0.29 -9.37 16
10 C -0.11 -1.54 5.81 -27.88 -0.16 -1.70 16
11 C -0.11 -1.91 4.51 -26.73 -0.12 -2.03 16
12 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16
13 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16
14 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16
15 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16
16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16
17 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16
18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16
19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16
22 C -0.13 -0.95 6.76 -25.83 -0.17 -1.12 16
23 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16
24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
25 H 0.06 0.35 7.34 -51.93 -0.38 -0.03 16
26 H 0.06 0.34 7.96 -51.93 -0.41 -0.08 16
27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16
30 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16
31 H 0.10 0.81 7.66 -51.93 -0.40 0.42 16
32 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16
33 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16
34 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16
35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16
36 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16
37 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16
38 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16
39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
43 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16
44 H 0.07 0.55 8.10 -51.92 -0.42 0.13 16
LS Contribution 359.86 15.07 5.42 5.42
Total: -1.00 -32.15 359.86 -8.55 -40.70
By element:
Atomic # 1 Polarization: 2.86 SS G_CDS: -8.30 Total: -5.44 kcal
Atomic # 6 Polarization: -15.74 SS G_CDS: -0.70 Total: -16.44 kcal
Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.76 kcal
Atomic # 8 Polarization: -13.69 SS G_CDS: -0.70 Total: -14.39 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -32.15 -8.55 -40.70 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000805989642.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.758 kcal
(2) G-P(sol) polarization free energy of solvation -32.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.906 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.460 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds