Wall clock time and date at job start Mon Mar 30 2020 07:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 O 1.45200 * 109.47003 * 176.52637 * 6 5 4 8 8 C 1.34222 * 117.00094 * 180.02562 * 7 6 5 9 9 O 1.20821 * 120.00135 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99985 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.47035 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47497 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47530 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99746 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99772 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99948 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47347 * 89.99874 * 18 16 14 20 20 H 1.48507 * 109.46923 * 210.00024 * 18 16 14 21 21 H 1.48502 * 109.46836 * 329.99673 * 18 16 14 22 22 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 23 23 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 24 24 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 25 25 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 26 26 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 27 27 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 28 28 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 29 29 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 30 30 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 31 31 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 32 32 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 33 33 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 34 34 H 1.08994 * 109.47313 * 299.99702 * 10 8 7 35 35 H 1.09006 * 109.46774 * 60.00058 * 10 8 7 36 36 H 1.08994 * 109.47204 * 300.00230 * 11 10 8 37 37 H 1.08998 * 109.47065 * 60.00332 * 11 10 8 38 38 H 1.09011 * 109.47087 * 300.00451 * 12 11 10 39 39 H 1.09003 * 109.47442 * 59.99921 * 12 11 10 40 40 H 1.08999 * 109.46646 * 300.00423 * 13 12 11 41 41 H 1.09003 * 109.47168 * 59.99351 * 13 12 11 42 42 H 0.97004 * 119.99446 * 180.02562 * 17 16 14 43 43 H 1.08999 * 113.61825 * 89.16304 * 22 5 4 44 44 H 1.09009 * 113.61337 * 220.05752 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 8 3.1466 -4.0118 -0.9687 8 6 4.1459 -4.8993 -1.0924 9 8 5.1382 -4.7906 -0.4117 10 6 4.0302 -6.0314 -2.0803 11 6 5.2953 -6.8899 -2.0227 12 6 5.1782 -8.0390 -3.0261 13 6 6.4430 -8.8979 -2.9681 14 6 6.3273 -10.0299 -3.9559 15 1 5.4404 -10.1269 -4.5647 16 6 7.3540 -10.9413 -4.0834 17 7 8.4341 -10.8229 -3.3424 18 14 7.2108 -12.3442 -5.3085 19 1 7.7614 -11.9151 -6.6191 20 1 7.9749 -13.5162 -4.8104 21 1 5.7824 -12.7167 -5.4697 22 6 2.1448 -0.9318 -1.0601 23 1 -0.3633 0.3313 0.9729 24 1 -0.3633 0.6769 -0.7732 25 1 -0.3634 -1.0081 -0.1995 26 1 3.1943 1.3532 -0.1995 27 1 1.6416 2.0076 -0.7733 28 1 1.9600 1.8733 0.9728 29 1 1.4945 -1.1068 1.9156 30 1 3.1590 -0.6487 1.3496 31 1 1.1573 -2.6019 0.0035 32 1 4.2073 -2.3618 -0.2587 33 1 3.4590 -3.3802 0.9947 34 1 3.1635 -6.6438 -1.8314 35 1 3.9121 -5.6260 -3.0853 36 1 6.1618 -6.2774 -2.2718 37 1 5.4138 -7.2953 -1.0178 38 1 4.3115 -8.6517 -2.7773 39 1 5.0598 -7.6333 -4.0309 40 1 7.3097 -8.2854 -3.2165 41 1 6.5609 -9.3035 -1.9632 42 1 9.1565 -11.4639 -3.4324 43 1 3.1575 -0.6534 -1.3517 44 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805989642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:09 Heat of formation + Delta-G solvation = -111.459892 kcal Electronic energy + Delta-G solvation = -19681.575248 eV Core-core repulsion = 16598.152738 eV Total energy + Delta-G solvation = -3083.422511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64317 -39.81993 -36.57199 -34.94732 -32.69175 -32.00416 -29.93351 -27.85193 -27.30449 -26.12721 -25.57537 -22.73677 -21.12002 -20.51763 -20.00101 -18.66250 -17.43762 -16.72542 -16.34942 -16.15459 -15.47135 -14.87356 -14.68536 -14.49989 -14.39576 -13.78571 -13.23294 -13.10496 -13.05702 -12.67887 -12.33968 -12.21859 -12.17113 -11.80385 -11.66655 -11.65823 -11.40375 -10.99862 -10.93812 -10.79325 -10.59175 -10.53921 -10.49444 -10.44815 -10.35250 -10.17873 -9.63635 -9.27295 -9.01039 -8.30914 -5.95698 -3.98199 2.34319 2.68816 3.34293 3.40304 3.43625 4.04782 4.18433 4.25156 4.34773 4.49012 4.74553 4.86030 4.97316 5.03403 5.16089 5.22574 5.25750 5.29810 5.33311 5.35664 5.39566 5.39809 5.48227 5.50442 5.52396 5.64743 5.74176 5.77422 5.81268 6.03309 6.07759 6.14675 6.22291 6.45254 6.51610 6.78407 6.96628 7.17548 7.73119 7.87764 7.88110 8.05267 8.47034 9.09364 9.65507 11.15615 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.060792 B = 0.002240 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.473686 B =12499.507608 C =12692.738980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.110 4.110 6 C 0.075 3.925 7 O -0.360 6.360 8 C 0.459 3.541 9 O -0.508 6.508 10 C -0.112 4.112 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.126 4.126 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.161 23.171 7.464 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.160 4.160 5 C -0.128 4.128 6 C 0.001 3.999 7 O -0.278 6.278 8 C 0.302 3.698 9 O -0.395 6.395 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.163 4.163 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.698 23.152 7.730 29.021 hybrid contribution 0.167 -0.764 -0.510 0.934 sum -15.531 22.387 7.220 28.188 Atomic orbital electron populations 1.21607 0.93032 1.02117 1.01860 1.21807 0.95697 0.94547 0.97016 1.21728 1.00568 0.95318 1.01696 1.23067 1.01619 0.94840 0.96481 1.22566 0.98209 0.93985 0.98082 1.23048 0.98327 0.87005 0.91506 1.86523 1.45579 1.37801 1.57892 1.24203 0.80342 0.82429 0.82839 1.90665 1.31144 1.73483 1.44181 1.21602 1.02928 0.92906 0.97501 1.21572 0.94592 0.96871 1.01559 1.21651 1.01236 0.95223 0.96647 1.19099 0.91622 0.93863 0.97168 1.21274 1.02664 1.10609 1.21312 0.92689 1.25049 0.95459 0.98027 0.96098 1.69977 1.06820 1.36780 1.39886 0.86597 0.78049 0.81935 0.81420 1.20705 1.21262 1.19903 1.23200 1.01419 0.95000 0.96688 0.92375 0.92313 0.92232 0.92481 0.92555 0.92562 0.90936 0.89717 0.88047 0.91285 0.91315 0.87937 0.87939 0.91586 0.91577 0.93209 0.93209 0.96555 0.96541 0.93042 0.89916 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 9.07 37.16 0.34 -0.40 16 2 C -0.09 -0.58 1.39 -153.60 -0.21 -0.79 16 3 C -0.14 -0.79 9.20 37.16 0.34 -0.45 16 4 C -0.12 -0.82 6.79 -25.92 -0.18 -1.00 16 5 C -0.11 -0.89 3.66 -89.81 -0.33 -1.22 16 6 C 0.08 0.80 5.29 37.16 0.20 0.99 16 7 O -0.36 -4.62 10.22 -39.24 -0.40 -5.02 16 8 C 0.46 6.78 7.96 36.01 0.29 7.07 16 9 O -0.51 -9.07 15.73 -18.75 -0.29 -9.37 16 10 C -0.11 -1.54 5.81 -27.88 -0.16 -1.70 16 11 C -0.11 -1.91 4.51 -26.73 -0.12 -2.03 16 12 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 13 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 14 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 C -0.13 -0.95 6.76 -25.83 -0.17 -1.12 16 23 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.35 7.34 -51.93 -0.38 -0.03 16 26 H 0.06 0.34 7.96 -51.93 -0.41 -0.08 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 31 H 0.10 0.81 7.66 -51.93 -0.40 0.42 16 32 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 44 H 0.07 0.55 8.10 -51.92 -0.42 0.13 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -32.15 359.86 -8.55 -40.70 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -8.30 Total: -5.44 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.70 Total: -16.44 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.70 Total: -14.39 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.15 -8.55 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805989642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.758 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds