Wall clock time and date at job start Mon Mar 30 2020 07:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 O 1.45200 * 109.47003 * 176.52637 * 6 5 4 8 8 C 1.34222 * 117.00094 * 180.02562 * 7 6 5 9 9 O 1.20821 * 120.00135 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99985 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.47035 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47497 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47530 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99746 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99772 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99948 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47347 * 89.99874 * 18 16 14 20 20 H 1.48507 * 109.46923 * 210.00024 * 18 16 14 21 21 H 1.48502 * 109.46836 * 329.99673 * 18 16 14 22 22 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 23 23 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 24 24 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 25 25 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 26 26 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 27 27 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 28 28 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 29 29 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 30 30 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 31 31 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 32 32 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 33 33 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 34 34 H 1.08994 * 109.47313 * 299.99702 * 10 8 7 35 35 H 1.09006 * 109.46774 * 60.00058 * 10 8 7 36 36 H 1.08994 * 109.47204 * 300.00230 * 11 10 8 37 37 H 1.08998 * 109.47065 * 60.00332 * 11 10 8 38 38 H 1.09011 * 109.47087 * 300.00451 * 12 11 10 39 39 H 1.09003 * 109.47442 * 59.99921 * 12 11 10 40 40 H 1.08999 * 109.46646 * 300.00423 * 13 12 11 41 41 H 1.09003 * 109.47168 * 59.99351 * 13 12 11 42 42 H 0.97004 * 119.99446 * 180.02562 * 17 16 14 43 43 H 1.08999 * 113.61825 * 89.16304 * 22 5 4 44 44 H 1.09009 * 113.61337 * 220.05752 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 8 3.1466 -4.0118 -0.9687 8 6 4.1459 -4.8993 -1.0924 9 8 5.1382 -4.7906 -0.4117 10 6 4.0302 -6.0314 -2.0803 11 6 5.2953 -6.8899 -2.0227 12 6 5.1782 -8.0390 -3.0261 13 6 6.4430 -8.8979 -2.9681 14 6 6.3273 -10.0299 -3.9559 15 1 5.4404 -10.1269 -4.5647 16 6 7.3540 -10.9413 -4.0834 17 7 8.4341 -10.8229 -3.3424 18 14 7.2108 -12.3442 -5.3085 19 1 7.7614 -11.9151 -6.6191 20 1 7.9749 -13.5162 -4.8104 21 1 5.7824 -12.7167 -5.4697 22 6 2.1448 -0.9318 -1.0601 23 1 -0.3633 0.3313 0.9729 24 1 -0.3633 0.6769 -0.7732 25 1 -0.3634 -1.0081 -0.1995 26 1 3.1943 1.3532 -0.1995 27 1 1.6416 2.0076 -0.7733 28 1 1.9600 1.8733 0.9728 29 1 1.4945 -1.1068 1.9156 30 1 3.1590 -0.6487 1.3496 31 1 1.1573 -2.6019 0.0035 32 1 4.2073 -2.3618 -0.2587 33 1 3.4590 -3.3802 0.9947 34 1 3.1635 -6.6438 -1.8314 35 1 3.9121 -5.6260 -3.0853 36 1 6.1618 -6.2774 -2.2718 37 1 5.4138 -7.2953 -1.0178 38 1 4.3115 -8.6517 -2.7773 39 1 5.0598 -7.6333 -4.0309 40 1 7.3097 -8.2854 -3.2165 41 1 6.5609 -9.3035 -1.9632 42 1 9.1565 -11.4639 -3.4324 43 1 3.1575 -0.6534 -1.3517 44 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805989642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:09 Heat of formation + Delta-G solvation = -127.242541 kcal Electronic energy + Delta-G solvation = -19682.259635 eV Core-core repulsion = 16598.152738 eV Total energy + Delta-G solvation = -3084.106898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64484 -40.55996 -37.71751 -36.61796 -34.66356 -32.70811 -31.60128 -28.44676 -28.23686 -27.15965 -26.67849 -24.45278 -22.05789 -21.80620 -21.43762 -19.24003 -18.59318 -18.35420 -17.78527 -17.37943 -16.49830 -16.36005 -15.92194 -15.36838 -15.18624 -14.67165 -14.56392 -14.16461 -14.00151 -13.70645 -13.59639 -13.54397 -13.36459 -12.84991 -12.81751 -12.70603 -12.36379 -12.32480 -12.19817 -12.19148 -12.12595 -11.75735 -11.50719 -11.48216 -11.38418 -11.29350 -11.08850 -10.96738 -10.87018 -10.54429 -8.18473 -6.30218 1.18078 1.41042 1.43101 1.54161 1.66296 2.42392 3.14424 3.46907 3.59003 3.60740 3.69070 3.86233 4.02410 4.08640 4.18873 4.22974 4.39570 4.41949 4.56515 4.63995 4.66945 4.76901 4.78186 4.80074 4.86163 4.87797 4.94197 4.98580 5.03600 5.14327 5.19621 5.24491 5.26142 5.30166 5.32505 5.44458 5.51627 5.56917 5.63010 5.77870 5.88431 6.25750 6.74255 6.88236 7.39269 8.93657 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.060792 B = 0.002240 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.473686 B =12499.507608 C =12692.738980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.119 4.119 5 C -0.108 4.108 6 C 0.070 3.930 7 O -0.355 6.355 8 C 0.463 3.537 9 O -0.546 6.546 10 C -0.103 4.103 11 C -0.100 4.100 12 C -0.096 4.096 13 C 0.018 3.982 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.008 4.008 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.260 1.260 22 C -0.129 4.129 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.063 0.937 40 H -0.014 1.014 41 H -0.013 1.013 42 H 0.263 0.737 43 H 0.077 0.923 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 23.558 6.534 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.157 4.157 5 C -0.126 4.126 6 C -0.003 4.003 7 O -0.272 6.272 8 C 0.308 3.692 9 O -0.437 6.437 10 C -0.140 4.140 11 C -0.138 4.138 12 C -0.134 4.134 13 C -0.019 4.019 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.184 1.184 22 C -0.166 4.166 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.956 23.560 6.795 30.392 hybrid contribution 0.876 -0.834 -0.176 1.222 sum -17.080 22.726 6.619 29.190 Atomic orbital electron populations 1.21615 0.92312 1.02205 1.02446 1.21802 0.96211 0.94588 0.96034 1.21728 1.00346 0.95020 1.02207 1.23081 1.01927 0.94087 0.96579 1.22605 0.97011 0.93762 0.99243 1.23281 0.99630 0.86613 0.90784 1.86515 1.44564 1.37848 1.58244 1.24346 0.79954 0.82642 0.82259 1.90661 1.32699 1.74507 1.45800 1.21495 1.01344 0.92414 0.98728 1.21352 0.96398 0.96362 0.99702 1.21443 0.98323 0.95310 0.98286 1.19060 0.93684 0.94131 0.95046 1.21753 1.03128 1.11275 1.21741 0.91557 1.26090 0.94989 1.01188 0.98216 1.70129 1.07787 1.38072 1.41777 0.85385 0.78739 0.77935 0.78597 1.19749 1.20988 1.18355 1.23222 1.01324 0.95190 0.96867 0.91673 0.91913 0.92370 0.92839 0.92165 0.91950 0.90043 0.89745 0.87644 0.91748 0.91657 0.85285 0.85328 0.93211 0.93186 0.91814 0.91806 0.99532 0.99509 0.92877 0.90415 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.07 71.98 0.65 -0.56 16 2 C -0.09 -0.97 1.39 -51.59 -0.07 -1.04 16 3 C -0.14 -1.38 9.20 71.98 0.66 -0.72 16 4 C -0.12 -1.43 6.79 31.12 0.21 -1.22 16 5 C -0.11 -1.61 3.66 -10.27 -0.04 -1.65 16 6 C 0.07 1.45 5.29 71.98 0.38 1.83 16 7 O -0.36 -8.62 10.22 -51.34 -0.52 -9.15 16 8 C 0.46 13.25 7.96 71.24 0.57 13.82 16 9 O -0.55 -19.72 15.73 21.98 0.35 -19.38 16 10 C -0.10 -2.60 5.81 29.85 0.17 -2.43 16 11 C -0.10 -3.52 4.51 30.60 0.14 -3.38 16 12 C -0.10 -3.85 5.15 30.59 0.16 -3.70 16 13 C 0.02 0.97 4.97 29.84 0.15 1.12 16 14 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 15 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 16 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 17 N -0.94 -58.77 13.29 21.45 0.28 -58.48 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 C -0.13 -1.79 6.76 31.18 0.21 -1.58 16 23 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.57 7.34 -2.39 -0.02 0.55 16 26 H 0.05 0.58 7.96 -2.39 -0.02 0.56 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.08 1.02 8.06 -2.39 -0.02 1.00 16 31 H 0.11 1.51 7.66 -2.39 -0.02 1.49 16 32 H 0.06 1.39 7.87 -2.39 -0.02 1.37 16 33 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 34 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 36 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.08 1.15 7.75 -2.39 -0.02 1.13 16 44 H 0.07 0.99 8.10 -2.38 -0.02 0.98 16 Total: -1.00 -70.11 359.86 6.95 -63.16 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.93 Total: 7.52 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.89 Total: -30.46 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.28 Total: -58.48 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.18 Total: -28.53 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.11 6.95 -63.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805989642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.082 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds