Wall clock time and date at job start Mon Mar 30 2020 07:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47363 * 2 1 4 4 C 1.50702 * 109.46780 * 240.00145 * 2 1 3 5 5 H 1.07999 * 119.99969 * 240.00251 * 4 2 1 6 6 C 1.37882 * 120.00115 * 60.00304 * 4 2 1 7 7 N 1.31517 * 119.99722 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00027 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47040 * 60.00342 * 8 6 4 10 10 H 1.48503 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47259 * 300.00045 * 8 6 4 12 12 C 1.53000 * 109.46952 * 120.00422 * 2 1 3 13 13 O 1.45192 * 109.47109 * 299.99743 * 12 2 1 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 2 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52999 * 110.01792 * 58.60679 * 17 16 14 19 19 C 1.54274 * 110.03394 * 297.16764 * 17 16 14 20 20 C 1.54884 * 104.19349 * 217.10315 * 19 17 16 21 21 C 1.54884 * 102.75052 * 37.94246 * 20 19 17 22 22 C 1.53875 * 110.03442 * 179.97438 * 17 16 14 23 23 H 1.08998 * 109.46733 * 299.99802 * 1 2 3 24 24 H 1.08997 * 109.46671 * 59.99738 * 1 2 3 25 25 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47015 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47368 * 300.00287 * 3 2 1 28 28 H 1.09000 * 109.46454 * 59.99898 * 3 2 1 29 29 H 0.97000 * 119.99888 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46829 * 179.97438 * 12 2 1 31 31 H 1.08998 * 109.47230 * 60.00045 * 12 2 1 32 32 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 33 33 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 34 34 H 1.08997 * 109.47104 * 60.69903 * 18 17 16 35 35 H 1.08997 * 109.47748 * 180.70185 * 18 17 16 36 36 H 1.09005 * 109.47116 * 300.70023 * 18 17 16 37 37 H 1.09002 * 110.48341 * 335.78333 * 19 17 16 38 38 H 1.08997 * 110.48562 * 98.42608 * 19 17 16 39 39 H 1.09001 * 110.75954 * 279.62316 * 20 19 17 40 40 H 1.09012 * 110.75461 * 156.25335 * 20 19 17 41 41 H 1.09001 * 110.49071 * 203.37639 * 21 20 19 42 42 H 1.09003 * 110.60325 * 80.78993 * 21 20 19 43 43 H 1.09004 * 110.03213 * 238.56758 * 22 17 16 44 44 H 1.08998 * 110.03392 * 359.95510 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 8 1.5561 -0.0370 2.4347 14 6 1.9172 -0.5468 3.6228 15 8 2.6141 -1.5326 3.6705 16 6 1.4523 0.1097 4.8971 17 6 1.9994 -0.6639 6.0984 18 6 3.5281 -0.6998 6.0461 19 6 1.4360 -2.1001 6.1032 20 6 1.2094 -2.4141 7.6028 21 6 0.7011 -1.0622 8.1622 22 6 1.5326 -0.0037 7.4076 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9564 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 0.7082 1.1610 -3.4844 30 1 3.1301 -0.7217 1.2490 31 1 1.6767 -1.7490 1.2491 32 1 1.8154 1.1369 4.9301 33 1 0.3628 0.1083 4.9301 34 1 3.9168 0.3179 6.0810 35 1 3.9077 -1.2632 6.8984 36 1 3.8488 -1.1798 5.1214 37 1 0.4930 -2.1418 5.5579 38 1 2.1576 -2.7944 5.6728 39 1 2.1444 -2.7037 8.0825 40 1 0.4545 -3.1911 7.7251 41 1 0.8863 -0.9991 9.2345 42 1 -0.3607 -0.9348 7.9514 43 1 2.3952 0.2900 8.0058 44 1 0.9170 0.8683 7.1872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808999910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:44 Heat of formation + Delta-G solvation = -119.585585 kcal Electronic energy + Delta-G solvation = -21463.936807 eV Core-core repulsion = 18380.161939 eV Total energy + Delta-G solvation = -3083.774867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37688 -38.58616 -36.42567 -34.79020 -32.30732 -31.24528 -28.79716 -28.36470 -25.71254 -25.60623 -25.16594 -24.52161 -20.89290 -20.74837 -18.84901 -18.62845 -17.11240 -16.02597 -15.94406 -15.75565 -15.07664 -14.96255 -14.55288 -13.86757 -13.67824 -13.28685 -13.05632 -12.78490 -12.60367 -12.07364 -11.73366 -11.59374 -11.39849 -11.29258 -11.16960 -11.12001 -10.98125 -10.83842 -10.73450 -10.63553 -10.56020 -10.47415 -10.37503 -10.17711 -9.85460 -9.70754 -9.37769 -9.25111 -8.75040 -8.36530 -6.00978 -4.12643 2.70113 3.29674 3.29854 3.34258 3.40392 4.38663 4.45975 4.48982 4.64176 5.08485 5.16147 5.24844 5.25222 5.34475 5.44299 5.53592 5.58110 5.62677 5.68999 5.77804 5.79387 5.89802 6.03193 6.09136 6.12465 6.13759 6.22864 6.30140 6.35662 6.48620 6.52087 6.78729 6.99843 7.13509 7.15386 7.22229 7.43490 7.63564 7.70768 8.06263 8.17402 8.34051 8.42309 8.87179 9.52735 11.00169 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041853 B = 0.003770 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.853395 B = 7425.516813 C = 7570.477178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.085 3.915 13 O -0.351 6.351 14 C 0.452 3.548 15 O -0.514 6.514 16 C -0.106 4.106 17 C -0.051 4.051 18 C -0.154 4.154 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.116 4.116 23 H 0.016 0.984 24 H 0.083 0.917 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -0.818 18.209 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 C -0.186 4.186 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.012 3.988 13 O -0.267 6.267 14 C 0.296 3.704 15 O -0.404 6.404 16 C -0.144 4.144 17 C -0.051 4.051 18 C -0.211 4.211 19 C -0.149 4.149 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.154 4.154 23 H 0.035 0.965 24 H 0.102 0.898 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.228 -0.979 18.011 18.039 hybrid contribution 0.416 -0.550 -0.928 1.157 sum 0.188 -1.529 17.083 17.152 Atomic orbital electron populations 1.21761 0.97366 0.98886 1.00620 1.18237 0.93393 0.93056 0.88399 1.21760 0.98017 0.98232 1.00623 1.20913 1.32003 1.12286 0.89882 0.92602 1.24857 0.94803 0.94912 0.98763 1.69823 1.36276 1.22582 1.23381 0.86605 0.79222 0.79762 0.82101 1.20245 1.21207 1.20251 1.23611 0.98051 0.95700 0.81390 1.86525 1.69141 1.55967 1.15086 1.23574 0.77705 0.82720 0.86401 1.90532 1.35834 1.25952 1.88043 1.21583 1.02907 1.00693 0.89203 1.20986 0.96406 0.95119 0.92569 1.22184 0.93683 1.01411 1.03772 1.22481 1.00982 0.95746 0.95682 1.22515 1.00689 0.96907 0.96254 1.22358 0.99590 0.95050 0.99178 1.22291 0.99734 0.98136 0.95230 0.96481 0.89786 0.95898 0.95901 0.89779 0.96486 0.92864 0.92701 0.92696 0.88204 0.88129 0.93391 0.92971 0.89642 0.92003 0.90399 0.91698 0.91858 0.91998 0.91705 0.91473 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.11 37.16 0.30 -2.82 16 2 C 0.07 1.72 0.58 -155.65 -0.09 1.63 16 3 C -0.13 -3.13 8.11 37.16 0.30 -2.82 16 4 C -0.51 -13.82 8.01 -34.44 -0.28 -14.09 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -24.09 9.35 55.43 0.52 -23.57 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.09 1.91 4.26 37.16 0.16 2.07 16 13 O -0.35 -7.03 8.88 -39.26 -0.35 -7.37 16 14 C 0.45 7.77 7.42 36.01 0.27 8.03 16 15 O -0.51 -9.68 11.91 -18.75 -0.22 -9.90 16 16 C -0.11 -1.33 4.52 -27.88 -0.13 -1.45 16 17 C -0.05 -0.57 0.63 -153.39 -0.10 -0.67 16 18 C -0.15 -1.85 7.82 37.16 0.29 -1.56 16 19 C -0.11 -1.32 4.74 -25.07 -0.12 -1.44 16 20 C -0.13 -1.20 6.91 -24.74 -0.17 -1.37 16 21 C -0.12 -1.05 6.83 -25.05 -0.17 -1.23 16 22 C -0.12 -1.05 6.12 -25.59 -0.16 -1.21 16 23 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 28 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.05 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.05 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.13 8.12 -51.93 -0.42 0.70 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.27 5.43 -51.93 -0.28 0.99 16 37 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 38 H 0.08 1.06 7.16 -51.93 -0.37 0.69 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 44 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -27.88 337.19 -7.87 -35.75 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.90 Total: -0.69 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 0.02 Total: -15.21 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.52 Total: -23.57 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.57 Total: -17.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.88 -7.87 -35.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808999910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.834 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds