Wall clock time and date at job start Mon Mar 30 2020 07:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47363 * 2 1 4 4 C 1.50702 * 109.46780 * 240.00145 * 2 1 3 5 5 H 1.07999 * 119.99969 * 240.00251 * 4 2 1 6 6 C 1.37882 * 120.00115 * 60.00304 * 4 2 1 7 7 N 1.31517 * 119.99722 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00027 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47040 * 60.00342 * 8 6 4 10 10 H 1.48503 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47259 * 300.00045 * 8 6 4 12 12 C 1.53000 * 109.46952 * 120.00422 * 2 1 3 13 13 O 1.45192 * 109.47109 * 299.99743 * 12 2 1 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 2 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52999 * 110.01792 * 58.60679 * 17 16 14 19 19 C 1.54274 * 110.03394 * 297.16764 * 17 16 14 20 20 C 1.54884 * 104.19349 * 217.10315 * 19 17 16 21 21 C 1.54884 * 102.75052 * 37.94246 * 20 19 17 22 22 C 1.53875 * 110.03442 * 179.97438 * 17 16 14 23 23 H 1.08998 * 109.46733 * 299.99802 * 1 2 3 24 24 H 1.08997 * 109.46671 * 59.99738 * 1 2 3 25 25 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47015 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47368 * 300.00287 * 3 2 1 28 28 H 1.09000 * 109.46454 * 59.99898 * 3 2 1 29 29 H 0.97000 * 119.99888 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46829 * 179.97438 * 12 2 1 31 31 H 1.08998 * 109.47230 * 60.00045 * 12 2 1 32 32 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 33 33 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 34 34 H 1.08997 * 109.47104 * 60.69903 * 18 17 16 35 35 H 1.08997 * 109.47748 * 180.70185 * 18 17 16 36 36 H 1.09005 * 109.47116 * 300.70023 * 18 17 16 37 37 H 1.09002 * 110.48341 * 335.78333 * 19 17 16 38 38 H 1.08997 * 110.48562 * 98.42608 * 19 17 16 39 39 H 1.09001 * 110.75954 * 279.62316 * 20 19 17 40 40 H 1.09012 * 110.75461 * 156.25335 * 20 19 17 41 41 H 1.09001 * 110.49071 * 203.37639 * 21 20 19 42 42 H 1.09003 * 110.60325 * 80.78993 * 21 20 19 43 43 H 1.09004 * 110.03213 * 238.56758 * 22 17 16 44 44 H 1.08998 * 110.03392 * 359.95510 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 8 1.5561 -0.0370 2.4347 14 6 1.9172 -0.5468 3.6228 15 8 2.6141 -1.5326 3.6705 16 6 1.4523 0.1097 4.8971 17 6 1.9994 -0.6639 6.0984 18 6 3.5281 -0.6998 6.0461 19 6 1.4360 -2.1001 6.1032 20 6 1.2094 -2.4141 7.6028 21 6 0.7011 -1.0622 8.1622 22 6 1.5326 -0.0037 7.4076 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9564 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 0.7082 1.1610 -3.4844 30 1 3.1301 -0.7217 1.2490 31 1 1.6767 -1.7490 1.2491 32 1 1.8154 1.1369 4.9301 33 1 0.3628 0.1083 4.9301 34 1 3.9168 0.3179 6.0810 35 1 3.9077 -1.2632 6.8984 36 1 3.8488 -1.1798 5.1214 37 1 0.4930 -2.1418 5.5579 38 1 2.1576 -2.7944 5.6728 39 1 2.1444 -2.7037 8.0825 40 1 0.4545 -3.1911 7.7251 41 1 0.8863 -0.9991 9.2345 42 1 -0.3607 -0.9348 7.9514 43 1 2.3952 0.2900 8.0058 44 1 0.9170 0.8683 7.1872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808999910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:43 Heat of formation + Delta-G solvation = -131.620855 kcal Electronic energy + Delta-G solvation = -21464.458695 eV Core-core repulsion = 18380.161939 eV Total energy + Delta-G solvation = -3084.296756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.68997 -39.69987 -38.05235 -36.53954 -33.38395 -33.08770 -29.57547 -29.48361 -27.57960 -27.48099 -26.97368 -25.62397 -22.24133 -21.54321 -20.69874 -19.60587 -18.57804 -17.74145 -17.41306 -17.27407 -16.63523 -15.93312 -15.85612 -15.06769 -15.02114 -14.67136 -14.46778 -14.21795 -13.76319 -13.61416 -13.32478 -13.11663 -12.92834 -12.72036 -12.62394 -12.52697 -12.32137 -12.18987 -12.12922 -11.90289 -11.76984 -11.62054 -11.56332 -11.39794 -11.33911 -11.26392 -11.20450 -10.86321 -10.74127 -10.40764 -8.05094 -6.23462 1.33371 1.43924 1.44019 1.51461 1.92344 2.45426 3.18023 3.56821 3.64962 3.78845 4.02246 4.26661 4.29397 4.34574 4.35618 4.46372 4.56064 4.62178 4.64025 4.69785 4.79580 4.85468 4.86761 5.00730 5.04470 5.06240 5.15416 5.18781 5.19797 5.22079 5.28005 5.31533 5.40708 5.44358 5.54182 5.55094 5.62103 5.63199 5.84191 6.07207 6.17536 6.36728 6.79509 6.92973 7.44490 8.94312 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041853 B = 0.003770 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.853395 B = 7425.516813 C = 7570.477178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.060 3.940 3 C -0.117 4.117 4 C -0.537 4.537 5 H 0.048 0.952 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.099 3.901 13 O -0.359 6.359 14 C 0.446 3.554 15 O -0.533 6.533 16 C -0.100 4.100 17 C -0.051 4.051 18 C -0.151 4.151 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.111 4.111 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.734 -0.217 19.910 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.059 3.941 3 C -0.175 4.175 4 C -0.575 4.575 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.026 3.974 13 O -0.275 6.275 14 C 0.291 3.709 15 O -0.424 6.424 16 C -0.137 4.137 17 C -0.051 4.051 18 C -0.208 4.208 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.148 4.148 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.611 -0.379 19.730 19.743 hybrid contribution 0.555 -0.766 -1.406 1.695 sum -0.055 -1.146 18.323 18.359 Atomic orbital electron populations 1.21605 0.97102 0.98479 1.00294 1.18268 0.93626 0.93285 0.88883 1.21604 0.97636 0.97940 1.00302 1.21189 1.32448 1.12511 0.91313 0.93412 1.25510 0.94948 0.95559 1.01142 1.69932 1.36607 1.23252 1.23920 0.85714 0.78677 0.78757 0.79072 1.20024 1.20575 1.20025 1.23139 0.97243 0.94988 0.82058 1.86519 1.69518 1.56080 1.15391 1.24608 0.77072 0.82599 0.86618 1.90547 1.36685 1.27007 1.88124 1.21794 1.04068 1.01349 0.86522 1.21041 0.95746 0.94826 0.93454 1.22130 0.94486 1.01801 1.02427 1.22463 0.99743 0.95837 0.97288 1.22502 1.01134 0.98045 0.94365 1.22362 0.99736 0.93731 0.99968 1.22265 1.00421 0.98501 0.93637 0.94856 0.91850 0.96291 0.96271 0.91841 0.94854 0.92800 0.93620 0.93666 0.86071 0.86212 0.92303 0.91997 0.92933 0.92870 0.93123 0.91456 0.91326 0.90419 0.91170 0.90518 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.11 71.98 0.58 -5.10 16 2 C 0.06 2.97 0.58 -52.92 -0.03 2.94 16 3 C -0.12 -5.68 8.11 71.98 0.58 -5.10 16 4 C -0.54 -29.24 8.01 25.60 0.21 -29.04 16 5 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 6 C 0.03 1.53 5.15 84.66 0.44 1.97 16 7 N -0.90 -49.27 9.35 21.45 0.20 -49.07 16 8 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.10 4.49 4.26 71.98 0.31 4.79 16 13 O -0.36 -14.13 8.88 -51.41 -0.46 -14.59 16 14 C 0.45 15.05 7.42 71.24 0.53 15.58 16 15 O -0.53 -20.40 11.91 21.97 0.26 -20.14 16 16 C -0.10 -2.28 4.52 29.85 0.13 -2.15 16 17 C -0.05 -1.05 0.63 -51.46 -0.03 -1.08 16 18 C -0.15 -3.47 7.82 71.98 0.56 -2.91 16 19 C -0.12 -2.66 4.74 31.67 0.15 -2.51 16 20 C -0.12 -2.10 6.91 31.88 0.22 -1.88 16 21 C -0.12 -1.65 6.83 31.68 0.22 -1.43 16 22 C -0.11 -1.62 6.12 31.34 0.19 -1.43 16 23 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 24 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 27 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 28 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 29 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 30 H 0.05 2.11 8.13 -2.39 -0.02 2.09 16 31 H 0.04 2.09 8.13 -2.39 -0.02 2.07 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.12 2.32 8.12 -2.39 -0.02 2.30 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.57 5.43 -2.38 -0.01 1.56 16 37 H 0.05 1.28 7.84 -2.39 -0.02 1.27 16 38 H 0.05 1.42 7.16 -2.39 -0.02 1.40 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 1.01 7.67 -2.39 -0.02 0.99 16 44 H 0.08 0.99 7.67 -2.39 -0.02 0.97 16 Total: -1.00 -59.80 337.19 7.03 -52.77 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.94 Total: 13.42 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.06 Total: -27.35 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.20 Total: -49.07 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.19 Total: -34.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -59.80 7.03 -52.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808999910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.849 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds