Wall clock time and date at job start Mon Mar 30 2020 07:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20763 * 120.00042 * 2 1 4 4 C 1.50704 * 120.00267 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47223 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.46899 * 180.02562 * 5 4 2 7 7 O 1.20823 * 120.00015 * 359.97438 * 6 5 4 8 8 O 1.34236 * 119.99654 * 180.02562 * 6 5 4 9 9 C 1.45194 * 116.99584 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46935 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.41421 * 305.00102 * 10 9 8 12 12 C 1.52959 * 109.35471 * 64.82402 * 10 9 8 13 13 C 1.53225 * 109.40286 * 183.66616 * 12 10 9 14 14 C 1.51265 * 108.54171 * 305.37610 * 13 12 10 15 15 C 1.37883 * 120.85142 * 231.37290 * 14 13 12 16 16 N 1.31508 * 119.99837 * 179.97438 * 15 14 13 17 17 Si 1.86807 * 119.99787 * 359.97163 * 15 14 13 18 18 H 1.48495 * 109.47014 * 60.00195 * 17 15 14 19 19 H 1.48493 * 109.46951 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47013 * 300.00440 * 17 15 14 21 21 C 1.51269 * 118.29860 * 51.34315 * 14 13 12 22 22 C 1.52956 * 109.41463 * 185.14144 * 10 9 8 23 23 H 1.09005 * 109.47214 * 239.99781 * 1 2 3 24 24 H 1.09001 * 109.47325 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47192 * 120.00316 * 1 2 3 26 26 H 1.09003 * 109.46972 * 60.00043 * 4 2 1 27 27 H 1.08998 * 109.46988 * 300.00273 * 4 2 1 28 28 H 1.08995 * 109.46948 * 59.99983 * 5 4 2 29 29 H 1.08998 * 109.47205 * 299.99949 * 5 4 2 30 30 H 1.09004 * 109.47193 * 60.00132 * 9 8 6 31 31 H 1.08995 * 109.47324 * 299.99809 * 9 8 6 32 32 H 1.09000 * 109.48184 * 303.65046 * 12 10 9 33 33 H 1.09003 * 109.47964 * 63.69125 * 12 10 9 34 34 H 1.09003 * 109.62685 * 185.65383 * 13 12 10 35 35 H 1.09003 * 109.78187 * 65.18320 * 13 12 10 36 36 H 0.97002 * 119.99967 * 179.97438 * 16 15 14 37 37 H 1.09004 * 109.62594 * 188.93855 * 21 14 13 38 38 H 1.08997 * 109.62459 * 68.37377 * 21 14 13 39 39 H 1.08997 * 109.48335 * 296.34662 * 22 10 9 40 40 H 1.09007 * 109.48184 * 56.38714 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5183 -2.3306 0.0011 7 8 3.9141 -3.3770 0.0011 8 8 5.8606 -2.3306 0.0020 9 6 6.5198 -3.6243 0.0024 10 6 8.0366 -3.4238 0.0029 11 1 8.3188 -2.7919 -0.8393 12 6 8.4583 -2.7484 1.3089 13 6 9.9635 -2.4642 1.2720 14 6 10.6902 -3.7574 0.9761 15 6 11.7319 -4.1816 1.7736 16 7 12.3516 -5.3091 1.5011 17 14 12.2629 -3.1548 3.2410 18 1 11.1243 -3.0126 4.1836 19 1 13.3956 -3.8240 3.9295 20 1 12.6911 -1.8111 2.7758 21 6 10.2443 -4.5737 -0.2168 22 6 8.7289 -4.7816 -0.1259 23 1 -0.3634 -0.5139 0.8900 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3634 -0.5139 -0.8900 26 1 1.9972 -1.8771 -0.8892 27 1 1.9972 -1.8763 0.8908 28 1 4.0277 -0.4537 0.8910 29 1 4.0284 -0.4541 -0.8889 30 1 6.2275 -4.1813 -0.8878 31 1 6.2263 -4.1812 0.8922 32 1 7.9140 -1.8113 1.4258 33 1 8.2332 -3.4070 2.1478 34 1 10.2865 -2.0754 2.2378 35 1 10.1822 -1.7347 0.4922 36 1 13.0847 -5.6074 2.0619 37 1 10.7477 -5.5405 -0.2077 38 1 10.4862 -4.0407 -1.1363 39 1 8.4974 -5.3919 0.7469 40 1 8.3765 -5.2855 -1.0260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809088815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:18 Heat of formation + Delta-G solvation = -160.968024 kcal Electronic energy + Delta-G solvation = -20178.493608 eV Core-core repulsion = 16957.091169 eV Total energy + Delta-G solvation = -3221.402439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53769 -39.65375 -37.44913 -36.00361 -33.39902 -32.58689 -30.70281 -29.84798 -29.17820 -26.25285 -24.61612 -21.75260 -21.13939 -20.64549 -19.83084 -19.17134 -17.66141 -16.78626 -16.49899 -16.09596 -15.67668 -15.33471 -15.16898 -14.47043 -14.12083 -13.60262 -13.32753 -12.99017 -12.75023 -12.66757 -12.54004 -12.48378 -12.21170 -11.98130 -11.74345 -11.55976 -11.13030 -10.87527 -10.75618 -10.70113 -10.32607 -10.28837 -10.06716 -10.00090 -9.81265 -9.54948 -8.84724 -8.59714 -8.44834 -6.08369 -3.98617 1.57991 2.23377 2.71946 3.30481 3.36924 3.38674 3.76964 4.30900 4.40464 4.68080 4.68954 4.87850 4.97341 5.06864 5.14934 5.26270 5.34010 5.41014 5.45383 5.57948 5.59765 5.68289 5.98887 6.05422 6.32998 6.52359 6.64529 6.70309 6.78088 6.93748 7.03577 7.10273 7.11263 7.18026 7.44627 7.67328 7.74823 7.82558 7.85596 8.41437 8.98803 9.56810 11.01528 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003328 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.584800 B = 8410.787576 C = 8922.803252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.355 3.645 3 O -0.457 6.457 4 C -0.162 4.162 5 C -0.109 4.109 6 C 0.459 3.541 7 O -0.518 6.518 8 O -0.350 6.350 9 C 0.072 3.928 10 C -0.072 4.072 11 H 0.070 0.930 12 C -0.102 4.102 13 C -0.011 4.011 14 C -0.488 4.488 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.293 1.293 20 H -0.275 1.275 21 C 0.011 3.989 22 C -0.102 4.102 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.264 0.736 37 H 0.058 0.942 38 H 0.005 0.995 39 H 0.052 0.948 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.550 7.063 -2.839 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.231 3.769 3 O -0.331 6.331 4 C -0.199 4.199 5 C -0.146 4.146 6 C 0.302 3.698 7 O -0.408 6.408 8 O -0.266 6.266 9 C -0.002 4.002 10 C -0.091 4.091 11 H 0.089 0.911 12 C -0.140 4.140 13 C -0.049 4.049 14 C -0.507 4.507 15 C -0.128 4.128 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.219 1.219 20 H -0.200 1.200 21 C -0.026 4.026 22 C -0.139 4.139 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.207 7.152 -2.778 21.615 hybrid contribution 0.216 0.152 0.877 0.915 sum -19.991 7.304 -1.901 21.369 Atomic orbital electron populations 1.22307 0.94025 1.05041 1.04775 1.24600 0.92206 0.89905 0.70200 1.90450 1.72005 1.35104 1.35521 1.21962 0.93776 0.97721 1.06485 1.21146 0.93084 0.93342 1.07043 1.23576 0.82003 0.91766 0.72418 1.90645 1.69618 1.34459 1.46069 1.86522 1.20103 1.37094 1.82848 1.23507 0.93884 0.80985 1.01786 1.21123 0.88530 0.99461 0.99982 0.91124 1.21579 0.98793 0.97975 0.95612 1.19629 0.92001 0.96933 0.96320 1.20057 1.14719 1.04510 1.11451 1.24847 0.95743 0.94836 0.97336 1.69822 1.22805 1.21059 1.39286 0.86654 0.77952 0.80462 0.82983 1.20019 1.21925 1.20030 1.19363 0.89502 0.98761 0.95005 1.21633 0.99819 0.93506 0.98990 0.88798 0.89933 0.88816 0.87349 0.87327 0.87149 0.87207 0.91802 0.91474 0.94244 0.93185 0.95878 0.96335 0.92573 0.92302 0.97711 0.92893 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.91 10.26 36.00 0.37 -0.54 16 2 C 0.36 2.70 7.27 -29.04 -0.21 2.49 16 3 O -0.46 -5.23 16.71 6.00 0.10 -5.13 16 4 C -0.16 -1.23 4.93 -27.88 -0.14 -1.37 16 5 C -0.11 -1.08 5.10 -27.88 -0.14 -1.22 16 6 C 0.46 6.28 7.96 36.01 0.29 6.57 16 7 O -0.52 -8.10 15.73 -18.75 -0.29 -8.39 16 8 O -0.35 -5.53 9.68 -39.27 -0.38 -5.91 16 9 C 0.07 1.20 4.83 37.16 0.18 1.38 16 10 C -0.07 -1.39 2.33 -90.66 -0.21 -1.60 16 11 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 12 C -0.10 -2.09 5.15 -26.64 -0.14 -2.23 16 13 C -0.01 -0.27 5.59 -27.49 -0.15 -0.42 16 14 C -0.49 -12.93 5.51 -98.92 -0.55 -13.48 16 15 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 16 N -0.89 -25.80 12.73 55.43 0.71 -25.10 16 17 Si 0.89 21.51 26.80 -169.99 -4.56 16.95 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.01 0.27 5.97 -27.49 -0.16 0.11 16 22 C -0.10 -2.12 5.21 -26.64 -0.14 -2.26 16 23 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 25 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.11 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.11 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 29 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 32 H 0.04 0.74 7.71 -51.93 -0.40 0.34 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.54 5.17 -51.93 -0.27 0.27 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 38 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -31.20 328.74 -7.08 -38.28 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -6.50 Total: -5.07 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.10 Total: -10.59 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.71 Total: -25.10 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.58 Total: -19.43 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.56 Total: 16.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.20 -7.08 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809088815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.687 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds