Wall clock time and date at job start Mon Mar 30 2020 07:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20763 * 120.00042 * 2 1 4 4 C 1.50704 * 120.00267 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47223 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.46899 * 180.02562 * 5 4 2 7 7 O 1.20823 * 120.00015 * 359.97438 * 6 5 4 8 8 O 1.34236 * 119.99654 * 180.02562 * 6 5 4 9 9 C 1.45194 * 116.99584 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46935 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.41421 * 305.00102 * 10 9 8 12 12 C 1.52959 * 109.35471 * 64.82402 * 10 9 8 13 13 C 1.53225 * 109.40286 * 183.66616 * 12 10 9 14 14 C 1.51265 * 108.54171 * 305.37610 * 13 12 10 15 15 C 1.37883 * 120.85142 * 231.37290 * 14 13 12 16 16 N 1.31508 * 119.99837 * 179.97438 * 15 14 13 17 17 Si 1.86807 * 119.99787 * 359.97163 * 15 14 13 18 18 H 1.48495 * 109.47014 * 60.00195 * 17 15 14 19 19 H 1.48493 * 109.46951 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47013 * 300.00440 * 17 15 14 21 21 C 1.51269 * 118.29860 * 51.34315 * 14 13 12 22 22 C 1.52956 * 109.41463 * 185.14144 * 10 9 8 23 23 H 1.09005 * 109.47214 * 239.99781 * 1 2 3 24 24 H 1.09001 * 109.47325 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47192 * 120.00316 * 1 2 3 26 26 H 1.09003 * 109.46972 * 60.00043 * 4 2 1 27 27 H 1.08998 * 109.46988 * 300.00273 * 4 2 1 28 28 H 1.08995 * 109.46948 * 59.99983 * 5 4 2 29 29 H 1.08998 * 109.47205 * 299.99949 * 5 4 2 30 30 H 1.09004 * 109.47193 * 60.00132 * 9 8 6 31 31 H 1.08995 * 109.47324 * 299.99809 * 9 8 6 32 32 H 1.09000 * 109.48184 * 303.65046 * 12 10 9 33 33 H 1.09003 * 109.47964 * 63.69125 * 12 10 9 34 34 H 1.09003 * 109.62685 * 185.65383 * 13 12 10 35 35 H 1.09003 * 109.78187 * 65.18320 * 13 12 10 36 36 H 0.97002 * 119.99967 * 179.97438 * 16 15 14 37 37 H 1.09004 * 109.62594 * 188.93855 * 21 14 13 38 38 H 1.08997 * 109.62459 * 68.37377 * 21 14 13 39 39 H 1.08997 * 109.48335 * 296.34662 * 22 10 9 40 40 H 1.09007 * 109.48184 * 56.38714 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5183 -2.3306 0.0011 7 8 3.9141 -3.3770 0.0011 8 8 5.8606 -2.3306 0.0020 9 6 6.5198 -3.6243 0.0024 10 6 8.0366 -3.4238 0.0029 11 1 8.3188 -2.7919 -0.8393 12 6 8.4583 -2.7484 1.3089 13 6 9.9635 -2.4642 1.2720 14 6 10.6902 -3.7574 0.9761 15 6 11.7319 -4.1816 1.7736 16 7 12.3516 -5.3091 1.5011 17 14 12.2629 -3.1548 3.2410 18 1 11.1243 -3.0126 4.1836 19 1 13.3956 -3.8240 3.9295 20 1 12.6911 -1.8111 2.7758 21 6 10.2443 -4.5737 -0.2168 22 6 8.7289 -4.7816 -0.1259 23 1 -0.3634 -0.5139 0.8900 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3634 -0.5139 -0.8900 26 1 1.9972 -1.8771 -0.8892 27 1 1.9972 -1.8763 0.8908 28 1 4.0277 -0.4537 0.8910 29 1 4.0284 -0.4541 -0.8889 30 1 6.2275 -4.1813 -0.8878 31 1 6.2263 -4.1812 0.8922 32 1 7.9140 -1.8113 1.4258 33 1 8.2332 -3.4070 2.1478 34 1 10.2865 -2.0754 2.2378 35 1 10.1822 -1.7347 0.4922 36 1 13.0847 -5.6074 2.0619 37 1 10.7477 -5.5405 -0.2077 38 1 10.4862 -4.0407 -1.1363 39 1 8.4974 -5.3919 0.7469 40 1 8.3765 -5.2855 -1.0260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809088815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:17 Heat of formation + Delta-G solvation = -178.063853 kcal Electronic energy + Delta-G solvation = -20179.234939 eV Core-core repulsion = 16957.091169 eV Total energy + Delta-G solvation = -3222.143770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61778 -40.39647 -39.00639 -37.37207 -34.55465 -34.11444 -31.68855 -31.27719 -30.83304 -27.38923 -25.90355 -23.46186 -22.93345 -21.77125 -20.86389 -20.45364 -18.72815 -18.07709 -17.68088 -17.50657 -16.54517 -16.38264 -16.16002 -15.82789 -15.32924 -15.10668 -14.69935 -14.57923 -14.16644 -14.13094 -13.68910 -13.35186 -13.04555 -13.00851 -12.94224 -12.80181 -12.63330 -12.52640 -12.43424 -12.24957 -11.90836 -11.70226 -11.53990 -11.49046 -11.32467 -10.73627 -10.66621 -10.53438 -10.46212 -8.17029 -6.10136 1.01423 1.16356 1.38971 1.39627 1.47828 1.66070 2.40531 3.09427 3.16776 3.57341 3.86306 3.90746 3.98499 4.04471 4.18849 4.26782 4.46830 4.51478 4.59240 4.67272 4.72503 4.74440 4.77651 4.83703 4.96136 4.99541 5.05087 5.15529 5.24746 5.26227 5.29862 5.45455 5.50856 5.61504 5.65859 5.78866 5.88995 6.37371 6.55745 6.71089 6.96460 7.47540 8.94131 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003328 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.584800 B = 8410.787576 C = 8922.803252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.363 3.637 3 O -0.502 6.502 4 C -0.160 4.160 5 C -0.104 4.104 6 C 0.461 3.539 7 O -0.537 6.537 8 O -0.359 6.359 9 C 0.080 3.920 10 C -0.066 4.066 11 H 0.071 0.929 12 C -0.097 4.097 13 C -0.015 4.015 14 C -0.500 4.500 15 C 0.020 3.980 16 N -0.933 5.933 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.267 1.267 21 C 0.006 3.994 22 C -0.093 4.093 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.026 0.974 38 H 0.002 0.998 39 H 0.043 0.957 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.989 8.202 -2.718 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.242 3.758 3 O -0.379 6.379 4 C -0.197 4.197 5 C -0.142 4.142 6 C 0.305 3.695 7 O -0.428 6.428 8 O -0.275 6.275 9 C 0.007 3.993 10 C -0.084 4.084 11 H 0.089 0.911 12 C -0.135 4.135 13 C -0.053 4.053 14 C -0.519 4.519 15 C -0.178 4.178 16 N -0.573 5.573 17 Si 0.769 3.231 18 H -0.191 1.191 19 H -0.221 1.221 20 H -0.192 1.192 21 C -0.032 4.032 22 C -0.131 4.131 23 H 0.132 0.868 24 H 0.096 0.904 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.020 0.980 39 H 0.062 0.938 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.676 8.300 -2.659 24.294 hybrid contribution 0.939 -0.217 0.765 1.230 sum -21.738 8.083 -1.894 23.269 Atomic orbital electron populations 1.22327 0.91307 1.05412 1.06651 1.24984 0.93603 0.88977 0.68274 1.90450 1.73054 1.36408 1.37978 1.22014 0.92053 0.98087 1.07533 1.21251 0.94137 0.91256 1.07523 1.24238 0.81118 0.92774 0.71325 1.90638 1.69634 1.35494 1.46996 1.86513 1.21465 1.36301 1.83247 1.23194 0.92161 0.81660 1.02295 1.20946 0.90339 0.97938 0.99208 0.91054 1.21499 0.96775 0.99029 0.96168 1.19674 0.93788 0.95423 0.96390 1.20702 1.14345 1.05574 1.11279 1.25609 0.96240 0.95885 1.00094 1.69958 1.23777 1.22904 1.40653 0.85812 0.77705 0.79266 0.80328 1.19079 1.22121 1.19231 1.19344 0.92301 0.96925 0.94601 1.21448 0.96995 0.94925 0.99741 0.86841 0.90382 0.86751 0.86184 0.86367 0.86750 0.86536 0.90736 0.91598 0.92129 0.93849 0.95808 0.95944 0.92859 0.95482 0.97978 0.93849 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.20 10.26 71.23 0.73 -0.47 16 2 C 0.36 4.73 7.27 29.10 0.21 4.95 16 3 O -0.50 -10.86 16.71 -1.46 -0.02 -10.88 16 4 C -0.16 -2.00 4.93 29.85 0.15 -1.86 16 5 C -0.10 -1.84 5.10 29.85 0.15 -1.69 16 6 C 0.46 11.55 7.96 71.24 0.57 12.12 16 7 O -0.54 -15.55 15.73 21.97 0.35 -15.21 16 8 O -0.36 -10.48 9.68 -51.47 -0.50 -10.98 16 9 C 0.08 2.50 4.83 71.98 0.35 2.85 16 10 C -0.07 -2.40 2.33 -10.82 -0.03 -2.42 16 11 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 12 C -0.10 -3.80 5.15 30.66 0.16 -3.64 16 13 C -0.02 -0.70 5.59 30.10 0.17 -0.53 16 14 C -0.50 -26.53 5.51 -16.17 -0.09 -26.62 16 15 C 0.02 1.09 5.46 84.66 0.46 1.55 16 16 N -0.93 -55.45 12.73 21.45 0.27 -55.18 16 17 Si 0.94 44.17 26.80 68.60 1.84 46.01 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 C 0.01 0.29 5.97 30.10 0.18 0.47 16 22 C -0.09 -3.81 5.21 30.65 0.16 -3.65 16 23 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 24 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 25 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.12 1.27 8.10 -2.39 -0.02 1.25 16 27 H 0.12 1.30 8.10 -2.39 -0.02 1.28 16 28 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 29 H 0.12 1.94 8.10 -2.39 -0.02 1.92 16 30 H 0.07 2.17 8.13 -2.39 -0.02 2.16 16 31 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 32 H 0.06 2.12 7.71 -2.39 -0.02 2.11 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.02 1.06 5.17 -2.39 -0.01 1.05 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.03 1.50 7.07 -2.38 -0.02 1.48 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -67.38 328.74 6.12 -61.26 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.01 Total: 3.92 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 3.17 Total: -18.95 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.27 Total: -55.18 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.18 Total: -37.07 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.84 Total: 46.01 kcal Total: -67.38 6.12 -61.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809088815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.802 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds