Wall clock time and date at job start Mon Mar 30 2020 07:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99840 * 2 1 4 4 O 1.42905 * 109.47048 * 134.99662 * 3 2 1 5 5 C 1.42904 * 114.00103 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47018 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47177 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47357 * 180.02562 * 7 6 5 9 9 O 1.20821 * 119.99951 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99690 * 180.02562 * 8 7 6 11 11 C 1.45207 * 116.99515 * 177.69679 * 10 8 7 12 12 C 1.50703 * 112.84464 * 65.18927 * 11 10 8 13 13 H 1.08008 * 119.99977 * 242.60759 * 12 11 10 14 14 C 1.37883 * 120.00399 * 62.61613 * 12 11 10 15 15 N 1.31516 * 119.99348 * 353.74601 * 14 12 11 16 16 Si 1.86797 * 120.00302 * 173.74779 * 14 12 11 17 17 H 1.48504 * 109.47092 * 89.99646 * 16 14 12 18 18 H 1.48489 * 109.47350 * 209.99650 * 16 14 12 19 19 H 1.48498 * 109.47064 * 329.99991 * 16 14 12 20 20 C 1.53780 * 113.61827 * 293.99155 * 11 10 8 21 21 C 1.53953 * 87.01850 * 220.04601 * 20 11 10 22 22 C 1.53778 * 113.61423 * 196.37877 * 11 10 8 23 23 H 1.07997 * 119.99783 * 179.97438 * 1 2 3 24 24 H 1.08004 * 120.00014 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.99952 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47014 * 15.00469 * 3 2 1 27 27 H 1.08993 * 109.47664 * 254.99973 * 3 2 1 28 28 H 1.09001 * 109.46890 * 60.00602 * 5 4 3 29 29 H 1.08999 * 109.47231 * 300.00785 * 5 4 3 30 30 H 1.09001 * 109.46910 * 60.00477 * 6 5 4 31 31 H 1.08998 * 109.47215 * 300.00707 * 6 5 4 32 32 H 1.09009 * 109.47023 * 300.00660 * 7 6 5 33 33 H 1.08999 * 109.47255 * 59.99837 * 7 6 5 34 34 H 0.97001 * 119.99179 * 185.02614 * 15 14 12 35 35 H 1.08996 * 113.61197 * 334.56952 * 20 11 10 36 36 H 1.08998 * 113.61274 * 105.47061 * 20 11 10 37 37 H 1.08995 * 113.53971 * 270.80742 * 21 20 11 38 38 H 1.09000 * 113.73988 * 139.94514 * 21 20 11 39 39 H 1.08995 * 113.62148 * 254.53224 * 22 11 10 40 40 H 1.08996 * 113.61510 * 25.35905 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9528 5 6 3.9084 2.4349 1.0322 6 6 5.0112 2.2537 2.0771 7 6 5.8477 3.5319 2.1626 8 6 6.9343 3.3532 3.1914 9 8 7.0296 2.3107 3.7947 10 8 7.7957 4.3526 3.4382 11 6 8.7843 4.1291 4.4780 12 6 9.7594 3.0332 4.1324 13 1 9.8084 2.1422 4.7409 14 6 10.5892 3.1681 3.0395 15 7 10.4466 4.1934 2.2283 16 14 11.9158 1.8947 2.7112 17 1 11.3660 0.8181 1.8486 18 1 13.0634 2.5409 2.0253 19 1 12.3726 1.3125 3.9987 20 6 8.1786 3.9936 5.8850 21 6 9.3714 4.8252 6.3910 22 6 9.4580 5.4190 4.9750 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3854 2.1161 0.2661 27 1 2.4755 1.4869 -0.9925 28 1 3.2689 3.2696 1.3194 29 1 4.3586 2.6397 0.0609 30 1 5.6506 1.4192 1.7895 31 1 4.5612 2.0487 3.0485 32 1 6.2977 3.7373 1.1912 33 1 5.2081 4.3662 2.4504 34 1 10.9805 4.2505 1.4205 35 1 7.2176 4.4955 5.9968 36 1 8.1688 2.9700 6.2594 37 1 10.2370 4.2225 6.6654 38 1 9.1046 5.5554 7.1551 39 1 10.4795 5.5444 4.6160 40 1 8.8480 6.3115 4.8364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:58 Heat of formation + Delta-G solvation = -101.338192 kcal Electronic energy + Delta-G solvation = -20426.440643 eV Core-core repulsion = 17207.623947 eV Total energy + Delta-G solvation = -3218.816696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29860 -38.25305 -37.12867 -34.51466 -34.06797 -32.83347 -32.27162 -27.63667 -26.16040 -25.46173 -24.54196 -23.09749 -21.76385 -20.14036 -19.47294 -18.53300 -16.98660 -16.72352 -16.39995 -15.69703 -15.28677 -15.05555 -14.85920 -14.61138 -14.01168 -13.86831 -13.29555 -13.02241 -12.70820 -12.22533 -12.00973 -11.80366 -11.54436 -11.23763 -11.05650 -11.02995 -10.90893 -10.87602 -10.65986 -10.38638 -10.26862 -9.95695 -9.86879 -9.78832 -9.47762 -9.23415 -8.76202 -8.52564 -8.48500 -6.09528 -4.20975 1.91190 3.27367 3.33944 3.38506 3.54111 3.59990 4.21016 4.36950 4.75737 4.88548 5.09009 5.15464 5.19505 5.25059 5.33285 5.35938 5.58224 5.61615 5.66455 5.73801 5.79741 5.90268 5.97275 6.25072 6.30697 6.36155 6.39250 6.47336 6.50966 6.57421 6.65489 6.93762 7.12236 7.16029 7.30913 7.57363 7.81109 7.99787 8.40187 8.82983 9.28443 9.49437 10.94885 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.003911 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.657462 B = 7157.804006 C = 7853.525658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C 0.087 3.913 4 O -0.384 6.384 5 C 0.064 3.936 6 C -0.104 4.104 7 C -0.115 4.115 8 C 0.461 3.539 9 O -0.513 6.513 10 O -0.346 6.346 11 C 0.241 3.759 12 C -0.513 4.513 13 H 0.067 0.933 14 C 0.075 3.925 15 N -0.863 5.863 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.159 4.159 21 C -0.132 4.132 22 C -0.109 4.109 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 -0.545 -3.707 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.166 4.166 3 C 0.010 3.990 4 O -0.303 6.303 5 C -0.013 4.013 6 C -0.142 4.142 7 C -0.153 4.153 8 C 0.303 3.697 9 O -0.402 6.402 10 O -0.262 6.262 11 C 0.207 3.793 12 C -0.550 4.550 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.499 5.499 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.196 4.196 21 C -0.170 4.170 22 C -0.146 4.146 23 H 0.121 0.879 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.567 -0.856 -3.510 14.040 hybrid contribution 0.665 -0.513 -0.552 1.004 sum -12.902 -1.368 -4.062 13.596 Atomic orbital electron populations 1.23817 0.95559 1.02170 1.00682 1.22798 0.95656 0.98428 0.99690 1.21524 0.89111 0.95654 0.92678 1.87928 1.44483 1.37651 1.60247 1.22549 0.92763 0.86753 0.99193 1.21240 0.95652 0.97978 0.99330 1.21191 0.95591 0.98935 0.99584 1.22753 0.81809 0.82879 0.82287 1.90557 1.71916 1.28229 1.49490 1.86471 1.41160 1.42324 1.56203 1.21150 0.84209 0.94289 0.79617 1.20957 1.16989 1.03370 1.13722 0.91462 1.25075 0.96842 0.95242 0.95912 1.70045 1.39769 1.28687 1.11394 0.86570 0.81304 0.81460 0.78688 1.20491 1.21020 1.19526 1.23546 0.96436 0.99698 0.99961 1.22570 0.99006 0.99067 0.96316 1.22901 1.01372 0.96597 0.93770 0.87871 0.88484 0.86528 0.92890 0.92366 0.93249 0.93090 0.90168 0.90452 0.88538 0.89073 0.92809 0.92306 0.91840 0.90260 0.93025 0.90793 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 14.31 29.01 0.42 -1.05 16 2 C -0.15 -1.43 9.89 -36.03 -0.36 -1.78 16 3 C 0.09 0.90 6.35 36.00 0.23 1.13 16 4 O -0.38 -5.27 10.33 -35.23 -0.36 -5.64 16 5 C 0.06 0.81 5.94 37.16 0.22 1.03 16 6 C -0.10 -1.64 4.87 -26.73 -0.13 -1.77 16 7 C -0.11 -1.93 5.81 -27.88 -0.16 -2.09 16 8 C 0.46 10.62 7.52 36.00 0.27 10.89 16 9 O -0.51 -13.13 14.43 -18.75 -0.27 -13.40 16 10 O -0.35 -8.76 9.76 -39.25 -0.38 -9.14 16 11 C 0.24 6.14 0.47 -90.96 -0.04 6.10 16 12 C -0.51 -14.34 7.08 -34.44 -0.24 -14.59 16 13 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 14 C 0.07 2.07 5.29 -17.82 -0.09 1.98 16 15 N -0.86 -24.33 12.78 55.43 0.71 -23.62 16 16 Si 0.89 21.46 29.55 -169.99 -5.02 16.44 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.16 -3.56 6.56 -25.83 -0.17 -3.73 16 21 C -0.13 -2.69 7.81 -25.83 -0.20 -2.89 16 22 C -0.11 -2.50 7.28 -25.92 -0.19 -2.69 16 23 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 24 H 0.10 0.67 7.90 -52.48 -0.41 0.25 16 25 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.05 0.48 7.86 -51.93 -0.41 0.07 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 31 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.47 8.09 -51.93 -0.42 1.05 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.82 7.97 -51.93 -0.41 1.41 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -31.54 340.89 -7.34 -38.88 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.69 Total: 0.80 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.45 Total: -9.46 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.71 Total: -23.62 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.02 Total: -28.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.54 -7.34 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.456 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds