Wall clock time and date at job start Mon Mar 30 2020 07:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99840 * 2 1 4 4 O 1.42905 * 109.47048 * 134.99662 * 3 2 1 5 5 C 1.42904 * 114.00103 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47018 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47177 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47357 * 180.02562 * 7 6 5 9 9 O 1.20821 * 119.99951 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99690 * 180.02562 * 8 7 6 11 11 C 1.45207 * 116.99515 * 177.69679 * 10 8 7 12 12 C 1.50703 * 112.84464 * 65.18927 * 11 10 8 13 13 H 1.08008 * 119.99977 * 242.60759 * 12 11 10 14 14 C 1.37883 * 120.00399 * 62.61613 * 12 11 10 15 15 N 1.31516 * 119.99348 * 353.74601 * 14 12 11 16 16 Si 1.86797 * 120.00302 * 173.74779 * 14 12 11 17 17 H 1.48504 * 109.47092 * 89.99646 * 16 14 12 18 18 H 1.48489 * 109.47350 * 209.99650 * 16 14 12 19 19 H 1.48498 * 109.47064 * 329.99991 * 16 14 12 20 20 C 1.53780 * 113.61827 * 293.99155 * 11 10 8 21 21 C 1.53953 * 87.01850 * 220.04601 * 20 11 10 22 22 C 1.53778 * 113.61423 * 196.37877 * 11 10 8 23 23 H 1.07997 * 119.99783 * 179.97438 * 1 2 3 24 24 H 1.08004 * 120.00014 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.99952 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47014 * 15.00469 * 3 2 1 27 27 H 1.08993 * 109.47664 * 254.99973 * 3 2 1 28 28 H 1.09001 * 109.46890 * 60.00602 * 5 4 3 29 29 H 1.08999 * 109.47231 * 300.00785 * 5 4 3 30 30 H 1.09001 * 109.46910 * 60.00477 * 6 5 4 31 31 H 1.08998 * 109.47215 * 300.00707 * 6 5 4 32 32 H 1.09009 * 109.47023 * 300.00660 * 7 6 5 33 33 H 1.08999 * 109.47255 * 59.99837 * 7 6 5 34 34 H 0.97001 * 119.99179 * 185.02614 * 15 14 12 35 35 H 1.08996 * 113.61197 * 334.56952 * 20 11 10 36 36 H 1.08998 * 113.61274 * 105.47061 * 20 11 10 37 37 H 1.08995 * 113.53971 * 270.80742 * 21 20 11 38 38 H 1.09000 * 113.73988 * 139.94514 * 21 20 11 39 39 H 1.08995 * 113.62148 * 254.53224 * 22 11 10 40 40 H 1.08996 * 113.61510 * 25.35905 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9528 5 6 3.9084 2.4349 1.0322 6 6 5.0112 2.2537 2.0771 7 6 5.8477 3.5319 2.1626 8 6 6.9343 3.3532 3.1914 9 8 7.0296 2.3107 3.7947 10 8 7.7957 4.3526 3.4382 11 6 8.7843 4.1291 4.4780 12 6 9.7594 3.0332 4.1324 13 1 9.8084 2.1422 4.7409 14 6 10.5892 3.1681 3.0395 15 7 10.4466 4.1934 2.2283 16 14 11.9158 1.8947 2.7112 17 1 11.3660 0.8181 1.8486 18 1 13.0634 2.5409 2.0253 19 1 12.3726 1.3125 3.9987 20 6 8.1786 3.9936 5.8850 21 6 9.3714 4.8252 6.3910 22 6 9.4580 5.4190 4.9750 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3854 2.1161 0.2661 27 1 2.4755 1.4869 -0.9925 28 1 3.2689 3.2696 1.3194 29 1 4.3586 2.6397 0.0609 30 1 5.6506 1.4192 1.7895 31 1 4.5612 2.0487 3.0485 32 1 6.2977 3.7373 1.1912 33 1 5.2081 4.3662 2.4504 34 1 10.9805 4.2505 1.4205 35 1 7.2176 4.4955 5.9968 36 1 8.1688 2.9700 6.2594 37 1 10.2370 4.2225 6.6654 38 1 9.1046 5.5554 7.1551 39 1 10.4795 5.5444 4.6160 40 1 8.8480 6.3115 4.8364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:58 Heat of formation + Delta-G solvation = -119.060082 kcal Electronic energy + Delta-G solvation = -20427.209121 eV Core-core repulsion = 17207.623947 eV Total energy + Delta-G solvation = -3219.585174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12910 -39.31079 -38.82269 -36.05374 -35.32879 -34.37568 -33.97014 -28.89951 -28.02557 -26.48430 -26.34330 -24.81524 -23.07155 -21.23211 -20.72137 -20.45509 -18.81433 -17.82955 -17.47469 -17.17227 -16.97109 -16.82596 -16.43799 -15.97031 -15.69791 -15.09999 -14.77489 -14.31132 -14.10245 -13.54566 -13.48356 -13.24706 -13.00431 -12.94825 -12.84950 -12.75595 -12.26809 -12.15152 -12.07939 -11.94027 -11.81222 -11.77254 -11.63218 -11.10547 -10.80134 -10.78561 -10.49527 -10.40762 -10.23277 -8.19489 -6.36850 1.23903 1.34336 1.36158 1.46275 1.77570 2.28604 2.36495 2.91259 3.14603 3.89393 3.96751 3.98814 4.01797 4.06763 4.18876 4.24190 4.31327 4.42369 4.46195 4.52084 4.54178 4.59790 4.65113 4.77203 4.86010 4.93998 4.98925 5.10584 5.15907 5.24506 5.37096 5.43901 5.63845 5.66081 5.72709 5.77784 6.05624 6.28091 6.49432 6.67781 7.30850 7.47559 8.84304 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.003911 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.657462 B = 7157.804006 C = 7853.525658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.083 3.917 4 O -0.413 6.413 5 C 0.070 3.930 6 C -0.097 4.097 7 C -0.102 4.102 8 C 0.447 3.553 9 O -0.548 6.548 10 O -0.359 6.359 11 C 0.215 3.785 12 C -0.532 4.532 13 H 0.045 0.955 14 C 0.034 3.966 15 N -0.884 5.884 16 Si 0.947 3.053 17 H -0.283 1.283 18 H -0.272 1.272 19 H -0.268 1.268 20 C -0.153 4.153 21 C -0.113 4.113 22 C -0.106 4.106 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 0.418 -4.084 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.007 3.993 4 O -0.333 6.333 5 C -0.006 4.006 6 C -0.135 4.135 7 C -0.140 4.140 8 C 0.291 3.709 9 O -0.440 6.440 10 O -0.275 6.275 11 C 0.181 3.819 12 C -0.569 4.569 13 H 0.063 0.937 14 C -0.169 4.169 15 N -0.521 5.521 16 Si 0.772 3.228 17 H -0.209 1.209 18 H -0.196 1.196 19 H -0.193 1.193 20 C -0.191 4.191 21 C -0.150 4.150 22 C -0.144 4.144 23 H 0.134 0.866 24 H 0.129 0.871 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.924 0.116 -3.891 15.423 hybrid contribution 0.992 -0.854 -0.437 1.380 sum -13.932 -0.739 -4.329 14.608 Atomic orbital electron populations 1.24056 0.94950 1.03491 0.97899 1.22827 0.96418 0.98013 1.02310 1.21717 0.88602 0.96542 0.92443 1.87884 1.45586 1.38336 1.61501 1.22468 0.92234 0.87264 0.98661 1.21130 0.96078 0.96427 0.99896 1.21247 0.94111 1.00711 0.97908 1.23962 0.82228 0.81922 0.82783 1.90532 1.72934 1.29391 1.51093 1.86450 1.41531 1.43131 1.56414 1.21376 0.84704 0.94932 0.80918 1.21068 1.18396 1.03504 1.13941 0.93709 1.25691 0.98447 0.97030 0.95732 1.70110 1.40547 1.29771 1.11661 0.85734 0.79308 0.79283 0.78484 1.20889 1.19646 1.19270 1.23482 0.97987 0.99327 0.98263 1.22492 0.97685 0.98926 0.95883 1.22872 0.99971 0.96346 0.95231 0.86565 0.87108 0.87451 0.91272 0.91449 0.90675 0.91679 0.93064 0.91710 0.87334 0.85399 0.92601 0.90722 0.93639 0.90815 0.88958 0.93089 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 14.31 67.78 0.97 -1.32 16 2 C -0.18 -3.24 9.89 25.65 0.25 -2.99 16 3 C 0.08 1.58 6.35 71.24 0.45 2.03 16 4 O -0.41 -10.94 10.33 -148.98 -1.54 -12.47 16 5 C 0.07 1.63 5.94 71.98 0.43 2.06 16 6 C -0.10 -3.02 4.87 30.59 0.15 -2.87 16 7 C -0.10 -3.30 5.81 29.85 0.17 -3.12 16 8 C 0.45 20.70 7.52 71.24 0.54 21.23 16 9 O -0.55 -28.88 14.43 21.98 0.32 -28.56 16 10 O -0.36 -18.23 9.76 -51.37 -0.50 -18.73 16 11 C 0.21 11.01 0.47 -11.01 -0.01 11.01 16 12 C -0.53 -30.41 7.08 25.60 0.18 -30.23 16 13 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 14 C 0.03 1.93 5.29 84.66 0.45 2.37 16 15 N -0.88 -50.24 12.78 21.45 0.27 -49.96 16 16 Si 0.95 44.59 29.55 68.60 2.03 46.61 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.15 -6.79 6.56 31.18 0.20 -6.59 16 21 C -0.11 -4.40 7.81 31.18 0.24 -4.16 16 22 C -0.11 -4.84 7.28 31.12 0.23 -4.61 16 23 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 24 H 0.11 1.20 7.90 -2.91 -0.02 1.18 16 25 H 0.11 2.09 8.06 -2.91 -0.02 2.06 16 26 H 0.07 1.07 7.86 -2.39 -0.02 1.05 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 31 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 32 H 0.11 3.29 8.14 -2.38 -0.02 3.27 16 33 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.26 14.24 8.32 -92.71 -0.77 13.46 16 35 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.04 2.14 8.09 -2.39 -0.02 2.12 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.05 2.51 7.97 -2.39 -0.02 2.50 16 40 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -69.62 340.89 5.82 -63.79 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.99 Total: 16.51 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 4.26 Total: -17.18 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.27 Total: -49.96 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -1.72 Total: -59.77 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.62 5.82 -63.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.267 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds