Wall clock time and date at job start Mon Mar 30 2020 07:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47073 * 2 1 4 4 C 1.42897 * 114.00060 * 179.97438 * 3 2 1 5 5 C 1.53785 * 113.61200 * 150.00255 * 4 3 2 6 6 C 1.53775 * 87.08400 * 89.20223 * 5 4 3 7 7 C 1.50691 * 113.61674 * 139.98153 * 6 5 4 8 8 O 1.20827 * 120.00140 * 359.97438 * 7 6 5 9 9 O 1.34233 * 120.00248 * 180.02562 * 7 6 5 10 10 C 1.45198 * 117.00385 * 183.04005 * 9 7 6 11 11 C 1.50703 * 112.84675 * 294.87224 * 10 9 7 12 12 H 1.07994 * 120.00359 * 118.51668 * 11 10 9 13 13 C 1.37883 * 119.99994 * 298.52037 * 11 10 9 14 14 N 1.31515 * 119.99871 * 1.76636 * 13 11 10 15 15 Si 1.86802 * 120.00017 * 181.77063 * 13 11 10 16 16 H 1.48496 * 109.47004 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.47027 * 59.99666 * 15 13 11 18 18 H 1.48497 * 109.46845 * 299.99552 * 15 13 11 19 19 C 1.53782 * 113.61706 * 66.06502 * 10 9 7 20 20 C 1.53953 * 87.01654 * 89.23115 * 19 10 9 21 21 C 1.53778 * 113.61756 * 163.67710 * 10 9 7 22 22 C 1.53784 * 113.69159 * 247.53699 * 4 3 2 23 23 H 1.09000 * 109.47237 * 299.99582 * 1 2 3 24 24 H 1.08995 * 109.46998 * 60.00425 * 1 2 3 25 25 H 1.09000 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47270 * 239.99866 * 2 1 3 27 27 H 1.09003 * 109.46907 * 119.99901 * 2 1 3 28 28 H 1.09001 * 112.85193 * 18.80809 * 4 3 2 29 29 H 1.08998 * 113.60984 * 334.65134 * 5 4 3 30 30 H 1.09001 * 113.68753 * 203.76624 * 5 4 3 31 31 H 1.09004 * 113.61560 * 270.80290 * 6 5 4 32 32 H 0.97001 * 119.99821 * 355.05999 * 14 13 11 33 33 H 1.08996 * 113.61511 * 203.75221 * 19 10 9 34 34 H 1.09000 * 113.61116 * 334.65257 * 19 10 9 35 35 H 1.08994 * 113.54254 * 270.80802 * 20 19 10 36 36 H 1.09007 * 113.73902 * 139.94372 * 20 19 10 37 37 H 1.09005 * 113.61332 * 25.34389 * 21 10 9 38 38 H 1.08996 * 113.61628 * 156.24545 * 21 10 9 39 39 H 1.08996 * 113.60980 * 156.32900 * 22 4 3 40 40 H 1.08991 * 113.61501 * 25.42325 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9488 2.7252 -0.7039 6 6 3.8412 3.4323 0.6574 7 6 4.9864 4.3690 0.9434 8 8 5.8734 4.5036 0.1341 9 8 5.0216 5.0533 2.0977 10 6 6.1183 5.9878 2.2769 11 6 7.4617 5.3079 2.3426 12 1 8.2160 5.5296 1.6023 13 6 7.7276 4.4025 3.3480 14 7 6.7973 4.1063 4.2292 15 14 9.4093 3.5968 3.4586 16 1 9.4393 2.6710 4.6192 17 1 10.4488 4.6429 3.6334 18 1 9.6769 2.8367 2.2113 19 6 6.0778 7.1789 1.3051 20 6 5.2199 7.9048 2.3573 21 6 5.8851 7.0017 3.4093 22 6 4.0038 2.0455 1.3021 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9281 0.5457 -0.3229 29 1 3.2638 3.1180 -1.4553 30 1 4.9717 2.6352 -1.0695 31 1 2.8671 3.8873 0.8373 32 1 5.9491 4.5766 4.2156 33 1 7.0509 7.6415 1.1405 34 1 5.5462 6.9675 0.3773 35 1 4.1503 7.7284 2.2439 36 1 5.4650 8.9609 2.4707 37 1 5.1980 6.6474 4.1779 38 1 6.8054 7.4157 3.8212 39 1 5.0419 1.7685 1.4856 40 1 3.3633 1.8897 2.1701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:58 Heat of formation + Delta-G solvation = -96.171369 kcal Electronic energy + Delta-G solvation = -21417.368689 eV Core-core repulsion = 18198.776044 eV Total energy + Delta-G solvation = -3218.592645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06736 -38.92266 -37.17888 -35.59282 -34.14314 -32.36336 -30.99660 -26.58389 -25.63001 -25.50251 -24.69137 -22.93674 -22.63272 -20.98439 -19.16092 -18.38524 -17.47785 -16.75109 -15.94445 -15.68228 -15.46209 -15.08145 -14.49662 -14.03387 -13.74307 -13.48028 -13.39411 -12.97770 -12.67608 -12.30058 -12.23585 -12.12230 -11.56278 -11.48385 -11.36926 -11.14098 -10.83639 -10.58039 -10.43331 -10.36778 -10.23184 -10.12411 -10.08225 -9.99833 -9.46814 -9.23382 -8.93993 -8.43535 -8.11909 -6.36175 -4.13906 3.37276 3.42521 3.44175 3.54301 3.63271 3.87504 4.50874 4.67972 4.75219 4.94292 5.04940 5.07449 5.20738 5.27506 5.33030 5.37576 5.57482 5.60503 5.64364 5.73262 5.76713 5.92394 5.99252 6.01284 6.05705 6.21032 6.25845 6.32816 6.33357 6.49255 6.69207 6.71321 6.88890 7.10871 7.26883 7.39041 7.77676 8.20005 8.44005 8.84225 9.12239 9.62323 11.01703 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.005668 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.878387 B = 4938.452395 C = 5679.638651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.367 6.367 4 C 0.063 3.937 5 C -0.117 4.117 6 C -0.105 4.105 7 C 0.472 3.528 8 O -0.504 6.504 9 O -0.352 6.352 10 C 0.212 3.788 11 C -0.593 4.593 12 H 0.057 0.943 13 C 0.031 3.969 14 N -0.893 5.893 15 Si 1.063 2.937 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.288 1.288 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.111 4.111 22 C -0.134 4.134 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.279 0.721 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 -5.142 -6.263 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.286 6.286 4 C 0.005 3.995 5 C -0.154 4.154 6 C -0.125 4.125 7 C 0.314 3.686 8 O -0.393 6.393 9 O -0.269 6.269 10 C 0.178 3.822 11 C -0.631 4.631 12 H 0.075 0.925 13 C -0.176 4.176 14 N -0.529 5.529 15 Si 0.891 3.109 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.214 1.214 19 C -0.182 4.182 20 C -0.186 4.186 21 C -0.149 4.149 22 C -0.171 4.171 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.418 -6.026 -5.625 11.782 hybrid contribution -0.640 0.987 -0.867 1.461 sum -9.058 -5.039 -6.491 12.230 Atomic orbital electron populations 1.21744 0.93880 1.02070 1.03146 1.22520 0.95421 0.84045 1.00096 1.87880 1.20008 1.26151 1.94610 1.23058 0.81194 0.98106 0.97166 1.23154 1.02677 0.93963 0.95656 1.22387 0.97570 0.94194 0.98319 1.22790 0.86116 0.79461 0.80279 1.90550 1.37638 1.63344 1.47723 1.86382 1.51624 1.51483 1.37422 1.20823 0.84564 0.84632 0.92178 1.22017 0.97100 1.29654 1.14304 0.92460 1.25814 1.04199 0.94963 0.92654 1.70686 1.07063 1.39312 1.35790 0.83636 0.74551 0.76455 0.76214 1.20726 1.21232 1.21419 1.23350 0.99409 0.98558 0.96929 1.22985 0.98886 0.97989 0.98760 1.22967 0.99943 0.95640 0.96360 1.23312 1.02597 0.93553 0.97680 0.91775 0.91935 0.91252 0.93437 0.93245 0.90469 0.90337 0.87477 0.86812 0.90863 0.90088 0.92929 0.91270 0.92656 0.92359 0.89447 0.88416 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.93 16 2 C 0.06 0.58 6.50 37.16 0.24 0.82 16 3 O -0.37 -5.05 10.28 -35.23 -0.36 -5.41 16 4 C 0.06 0.88 4.37 -25.92 -0.11 0.77 16 5 C -0.12 -1.82 7.24 -25.92 -0.19 -2.01 16 6 C -0.11 -1.92 4.20 -90.96 -0.38 -2.30 16 7 C 0.47 11.04 6.86 36.00 0.25 11.29 16 8 O -0.50 -12.98 14.00 -18.75 -0.26 -13.25 16 9 O -0.35 -8.94 9.10 -39.27 -0.36 -9.30 16 10 C 0.21 5.43 0.11 -90.96 -0.01 5.42 16 11 C -0.59 -16.89 7.35 -34.44 -0.25 -17.14 16 12 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 13 C 0.03 0.89 5.40 -17.82 -0.10 0.80 16 14 N -0.89 -26.33 13.51 55.43 0.75 -25.58 16 15 Si 1.06 25.36 29.90 -169.99 -5.08 20.27 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.14 -3.28 6.90 -25.83 -0.18 -3.46 16 20 C -0.15 -2.95 8.03 -25.83 -0.21 -3.16 16 21 C -0.11 -2.55 6.66 -25.92 -0.17 -2.72 16 22 C -0.13 -2.25 7.46 -25.91 -0.19 -2.45 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.11 1.77 7.43 -51.93 -0.39 1.38 16 31 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 32 H 0.28 8.26 5.76 -40.82 -0.24 8.02 16 33 H 0.08 1.81 8.09 -51.93 -0.42 1.39 16 34 H 0.05 1.20 7.32 -51.93 -0.38 0.82 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.33 7.77 -51.93 -0.40 0.93 16 38 H 0.09 2.00 8.09 -51.93 -0.42 1.58 16 39 H 0.10 1.81 8.09 -51.93 -0.42 1.39 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -32.03 329.15 -7.79 -39.81 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.51 Total: 3.56 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.92 Total: -15.08 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.75 Total: -25.58 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.98 Total: -27.95 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.03 -7.79 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.356 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds