Wall clock time and date at job start Mon Mar 30 2020 07:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47073 * 2 1 4 4 C 1.42897 * 114.00060 * 179.97438 * 3 2 1 5 5 C 1.53785 * 113.61200 * 150.00255 * 4 3 2 6 6 C 1.53775 * 87.08400 * 89.20223 * 5 4 3 7 7 C 1.50691 * 113.61674 * 139.98153 * 6 5 4 8 8 O 1.20827 * 120.00140 * 359.97438 * 7 6 5 9 9 O 1.34233 * 120.00248 * 180.02562 * 7 6 5 10 10 C 1.45198 * 117.00385 * 183.04005 * 9 7 6 11 11 C 1.50703 * 112.84675 * 294.87224 * 10 9 7 12 12 H 1.07994 * 120.00359 * 118.51668 * 11 10 9 13 13 C 1.37883 * 119.99994 * 298.52037 * 11 10 9 14 14 N 1.31515 * 119.99871 * 1.76636 * 13 11 10 15 15 Si 1.86802 * 120.00017 * 181.77063 * 13 11 10 16 16 H 1.48496 * 109.47004 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.47027 * 59.99666 * 15 13 11 18 18 H 1.48497 * 109.46845 * 299.99552 * 15 13 11 19 19 C 1.53782 * 113.61706 * 66.06502 * 10 9 7 20 20 C 1.53953 * 87.01654 * 89.23115 * 19 10 9 21 21 C 1.53778 * 113.61756 * 163.67710 * 10 9 7 22 22 C 1.53784 * 113.69159 * 247.53699 * 4 3 2 23 23 H 1.09000 * 109.47237 * 299.99582 * 1 2 3 24 24 H 1.08995 * 109.46998 * 60.00425 * 1 2 3 25 25 H 1.09000 * 109.46740 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47270 * 239.99866 * 2 1 3 27 27 H 1.09003 * 109.46907 * 119.99901 * 2 1 3 28 28 H 1.09001 * 112.85193 * 18.80809 * 4 3 2 29 29 H 1.08998 * 113.60984 * 334.65134 * 5 4 3 30 30 H 1.09001 * 113.68753 * 203.76624 * 5 4 3 31 31 H 1.09004 * 113.61560 * 270.80290 * 6 5 4 32 32 H 0.97001 * 119.99821 * 355.05999 * 14 13 11 33 33 H 1.08996 * 113.61511 * 203.75221 * 19 10 9 34 34 H 1.09000 * 113.61116 * 334.65257 * 19 10 9 35 35 H 1.08994 * 113.54254 * 270.80802 * 20 19 10 36 36 H 1.09007 * 113.73902 * 139.94372 * 20 19 10 37 37 H 1.09005 * 113.61332 * 25.34389 * 21 10 9 38 38 H 1.08996 * 113.61628 * 156.24545 * 21 10 9 39 39 H 1.08996 * 113.60980 * 156.32900 * 22 4 3 40 40 H 1.08991 * 113.61501 * 25.42325 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9488 2.7252 -0.7039 6 6 3.8412 3.4323 0.6574 7 6 4.9864 4.3690 0.9434 8 8 5.8734 4.5036 0.1341 9 8 5.0216 5.0533 2.0977 10 6 6.1183 5.9878 2.2769 11 6 7.4617 5.3079 2.3426 12 1 8.2160 5.5296 1.6023 13 6 7.7276 4.4025 3.3480 14 7 6.7973 4.1063 4.2292 15 14 9.4093 3.5968 3.4586 16 1 9.4393 2.6710 4.6192 17 1 10.4488 4.6429 3.6334 18 1 9.6769 2.8367 2.2113 19 6 6.0778 7.1789 1.3051 20 6 5.2199 7.9048 2.3573 21 6 5.8851 7.0017 3.4093 22 6 4.0038 2.0455 1.3021 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9281 0.5457 -0.3229 29 1 3.2638 3.1180 -1.4553 30 1 4.9717 2.6352 -1.0695 31 1 2.8671 3.8873 0.8373 32 1 5.9491 4.5766 4.2156 33 1 7.0509 7.6415 1.1405 34 1 5.5462 6.9675 0.3773 35 1 4.1503 7.7284 2.2439 36 1 5.4650 8.9609 2.4707 37 1 5.1980 6.6474 4.1779 38 1 6.8054 7.4157 3.8212 39 1 5.0419 1.7685 1.4856 40 1 3.3633 1.8897 2.1701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:58 Heat of formation + Delta-G solvation = -114.200781 kcal Electronic energy + Delta-G solvation = -21418.150503 eV Core-core repulsion = 18198.776044 eV Total energy + Delta-G solvation = -3219.374459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72836 -40.42108 -38.80915 -36.87524 -36.06256 -34.51183 -31.81122 -28.34209 -27.41239 -26.82105 -26.52236 -24.52416 -23.70871 -22.56823 -20.58325 -20.24946 -19.41788 -18.30923 -17.35140 -17.11955 -16.85537 -16.54439 -16.04053 -15.74377 -15.67342 -15.15619 -14.66763 -14.31937 -14.27185 -13.81985 -13.55232 -13.38308 -13.23136 -12.76953 -12.65070 -12.54306 -12.34023 -12.28074 -12.23438 -12.03319 -11.93510 -11.84330 -11.66259 -11.48151 -11.10307 -10.88896 -10.55665 -10.44492 -10.14313 -8.60065 -6.38667 1.47915 1.53590 1.54671 1.75072 2.12329 2.51885 2.54656 3.17695 3.38180 3.50574 3.68408 3.76933 3.80256 3.95184 4.06734 4.21326 4.22898 4.24916 4.38679 4.52955 4.53795 4.66858 4.69042 4.71116 4.84967 4.86654 4.89750 4.95732 4.96452 5.05590 5.07113 5.17592 5.30377 5.34819 5.54278 5.77329 6.09965 6.26810 6.27372 6.60887 7.20770 7.44488 8.77268 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.005668 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.878387 B = 4938.452395 C = 5679.638651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.381 6.381 4 C 0.086 3.914 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.462 3.538 8 O -0.535 6.535 9 O -0.363 6.363 10 C 0.186 3.814 11 C -0.609 4.609 12 H 0.036 0.964 13 C -0.010 4.010 14 N -0.912 5.912 15 Si 1.103 2.897 16 H -0.277 1.277 17 H -0.267 1.267 18 H -0.285 1.285 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.137 4.137 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.270 0.730 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 -5.706 -6.854 13.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.301 6.301 4 C 0.028 3.972 5 C -0.148 4.148 6 C -0.128 4.128 7 C 0.306 3.694 8 O -0.425 6.425 9 O -0.280 6.280 10 C 0.152 3.848 11 C -0.646 4.646 12 H 0.054 0.946 13 C -0.212 4.212 14 N -0.548 5.548 15 Si 0.926 3.074 16 H -0.202 1.202 17 H -0.192 1.192 18 H -0.211 1.211 19 C -0.182 4.182 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.175 4.175 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.146 0.854 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.460 -6.580 -6.219 13.094 hybrid contribution -0.364 1.147 -0.722 1.404 sum -9.824 -5.433 -6.941 13.198 Atomic orbital electron populations 1.21766 0.92643 1.03474 1.02715 1.22815 0.96479 0.82610 1.01159 1.87870 1.19271 1.28443 1.94471 1.22794 0.81874 0.98295 0.94226 1.23114 1.02609 0.94413 0.94670 1.22636 0.95922 0.93517 1.00706 1.23853 0.87064 0.79287 0.79228 1.90518 1.39292 1.64328 1.48387 1.86368 1.51168 1.51907 1.38581 1.21078 0.83743 0.85314 0.94711 1.22218 0.98368 1.30300 1.13760 0.94596 1.27015 1.06665 0.95362 0.92190 1.70791 1.07162 1.40100 1.36742 0.83121 0.71592 0.76357 0.76355 1.20183 1.19178 1.21080 1.23305 1.00047 0.97914 0.96890 1.22852 0.98777 0.99158 0.95027 1.22916 1.00032 0.95733 0.96230 1.23305 1.01640 0.93085 0.99472 0.92580 0.91987 0.88961 0.91748 0.92791 0.87950 0.88638 0.88682 0.85365 0.91942 0.90260 0.93582 0.90073 0.89173 0.92965 0.89951 0.90665 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.82 6.50 71.98 0.47 1.29 16 3 O -0.38 -9.55 10.28 -148.98 -1.53 -11.08 16 4 C 0.09 2.26 4.37 31.12 0.14 2.40 16 5 C -0.11 -3.32 7.24 31.12 0.23 -3.09 16 6 C -0.11 -3.93 4.20 -11.02 -0.05 -3.98 16 7 C 0.46 22.00 6.86 71.23 0.49 22.49 16 8 O -0.54 -28.26 14.00 21.96 0.31 -27.95 16 9 O -0.36 -18.77 9.10 -51.45 -0.47 -19.24 16 10 C 0.19 9.65 0.11 -11.01 0.00 9.64 16 11 C -0.61 -35.48 7.35 25.60 0.19 -35.29 16 12 H 0.04 2.18 7.81 -2.91 -0.02 2.16 16 13 C -0.01 -0.56 5.40 84.66 0.46 -0.10 16 14 N -0.91 -54.65 13.51 21.45 0.29 -54.36 16 15 Si 1.10 51.48 29.90 68.60 2.05 53.53 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 C -0.14 -6.50 6.90 31.18 0.22 -6.29 16 20 C -0.12 -4.57 8.03 31.18 0.25 -4.32 16 21 C -0.11 -5.08 6.66 31.12 0.21 -4.87 16 22 C -0.14 -4.58 7.46 31.12 0.23 -4.34 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 2.21 7.87 -2.39 -0.02 2.19 16 29 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.09 3.11 7.43 -2.39 -0.02 3.09 16 31 H 0.13 4.24 8.14 -2.38 -0.02 4.22 16 32 H 0.27 16.31 5.76 -92.71 -0.53 15.78 16 33 H 0.08 3.54 8.09 -2.39 -0.02 3.52 16 34 H 0.05 2.10 7.32 -2.39 -0.02 2.08 16 35 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.05 2.40 7.77 -2.38 -0.02 2.39 16 38 H 0.08 3.77 8.09 -2.39 -0.02 3.76 16 39 H 0.07 2.84 8.09 -2.39 -0.02 2.82 16 40 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -70.06 329.15 5.45 -64.61 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.24 Total: 22.44 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 3.56 Total: -27.94 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.29 Total: -54.36 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -1.69 Total: -58.27 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -70.06 5.45 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.590 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds