Wall clock time and date at job start Mon Mar 30 2020 06:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47130 * 270.00248 * 3 2 1 5 5 H 1.48493 * 109.47189 * 30.00686 * 3 2 1 6 6 H 1.48504 * 109.46664 * 150.00773 * 3 2 1 7 7 C 1.37874 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00181 * 173.72185 * 7 2 1 9 9 C 1.50701 * 119.99875 * 353.99557 * 7 2 1 10 10 O 1.45204 * 112.84938 * 299.63780 * 9 7 2 11 11 C 1.34227 * 116.99992 * 294.73409 * 10 9 7 12 12 O 1.20822 * 120.00251 * 4.56731 * 11 10 9 13 13 C 1.50704 * 119.99709 * 184.56606 * 11 10 9 14 14 O 1.42903 * 109.46933 * 180.02562 * 13 11 10 15 15 C 1.42903 * 113.99893 * 179.97438 * 14 13 11 16 16 C 1.54263 * 110.03143 * 267.90516 * 15 14 13 17 17 C 1.54958 * 104.15902 * 217.13537 * 16 15 14 18 18 C 1.54885 * 102.77759 * 37.89067 * 17 16 15 19 19 C 1.53869 * 110.02837 * 150.68694 * 15 14 13 20 20 C 1.53783 * 113.61237 * 168.44490 * 9 7 2 21 21 C 1.53955 * 87.01759 * 220.04600 * 20 9 7 22 22 C 1.53773 * 87.11436 * 25.36311 * 21 20 9 23 23 H 0.96996 * 119.99998 * 5.04250 * 1 2 3 24 24 H 1.09003 * 109.46752 * 299.99989 * 13 11 10 25 25 H 1.08996 * 109.46978 * 59.99957 * 13 11 10 26 26 H 1.09004 * 110.01475 * 29.29909 * 15 14 13 27 27 H 1.09001 * 110.48802 * 335.78868 * 16 15 14 28 28 H 1.09007 * 110.48500 * 98.42442 * 16 15 14 29 29 H 1.09000 * 110.72352 * 279.57290 * 17 16 15 30 30 H 1.09002 * 110.92143 * 156.29576 * 17 16 15 31 31 H 1.08999 * 110.48803 * 203.40313 * 18 17 16 32 32 H 1.08998 * 110.59989 * 80.81621 * 18 17 16 33 33 H 1.09001 * 110.03537 * 238.56385 * 19 15 14 34 34 H 1.09000 * 110.03650 * 0.02562 * 19 15 14 35 35 H 1.08997 * 113.61562 * 334.56258 * 20 9 7 36 36 H 1.08998 * 113.61343 * 105.47255 * 20 9 7 37 37 H 1.09006 * 113.53813 * 270.81316 * 21 20 9 38 38 H 1.09003 * 113.74542 * 139.94605 * 21 20 9 39 39 H 1.09000 * 113.62101 * 220.08995 * 22 21 20 40 40 H 1.09001 * 113.69195 * 89.19663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1028 9 6 1.2572 -2.4956 0.1354 10 8 0.5115 -2.5905 1.3777 11 6 1.2236 -2.6206 2.5151 12 8 2.4238 -2.4865 2.4802 13 6 0.5259 -2.8218 3.8357 14 8 1.4907 -2.8159 4.8899 15 6 0.9305 -2.9996 6.1916 16 6 0.6154 -1.6307 6.8293 17 6 0.9590 -1.8226 8.3280 18 6 2.2229 -2.7165 8.2779 19 6 1.9519 -3.6900 7.1123 20 6 2.1184 -3.7344 -0.1623 21 6 0.8895 -4.3157 -0.8847 22 6 0.4317 -2.8649 -1.1084 23 1 -0.4850 0.8368 -0.0738 24 1 -0.1904 -2.0156 3.9947 25 1 0.0017 -3.7773 3.8278 26 1 0.0223 -3.5988 6.1257 27 1 1.2406 -0.8528 6.3912 28 1 -0.4400 -1.3869 6.7072 29 1 0.1468 -2.3307 8.8480 30 1 1.1807 -0.8665 8.8021 31 1 2.3401 -3.2642 9.2130 32 1 3.1096 -2.1159 8.0750 33 1 1.5391 -4.6238 7.4941 34 1 2.8750 -3.8845 6.5664 35 1 2.9596 -3.5323 -0.8253 36 1 2.4054 -4.2912 0.7297 37 1 0.2295 -4.8860 -0.2309 38 1 1.1317 -4.8442 -1.8068 39 1 -0.6410 -2.7205 -0.9791 40 1 0.8100 -2.4234 -2.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:57 Heat of formation + Delta-G solvation = -117.605146 kcal Electronic energy + Delta-G solvation = -21232.167819 eV Core-core repulsion = 18012.645736 eV Total energy + Delta-G solvation = -3219.522084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50767 -38.76796 -36.99902 -35.55742 -34.01637 -32.32336 -28.94230 -28.60060 -26.96190 -26.21212 -24.54163 -22.59917 -20.82451 -20.44103 -20.30102 -18.13443 -17.13634 -16.81874 -16.11727 -15.54143 -15.14551 -15.03886 -14.66309 -14.48985 -13.95428 -13.63597 -13.38485 -13.08536 -12.65255 -12.01784 -11.76066 -11.53299 -11.45053 -11.21627 -11.19701 -11.14844 -11.00781 -10.89744 -10.69079 -10.53658 -10.42612 -10.12917 -9.97846 -9.89643 -9.39989 -9.18011 -8.87110 -8.50033 -8.28420 -6.06046 -4.15437 3.22888 3.32893 3.36266 3.43894 3.46887 4.40132 4.42211 4.54311 4.57092 4.90103 5.16957 5.24361 5.39366 5.42065 5.45312 5.55064 5.61376 5.64584 5.69785 5.75674 5.80699 5.83923 5.84496 5.94789 6.07735 6.16408 6.18059 6.27620 6.43543 6.46698 6.81448 6.84999 7.19053 7.28156 7.34259 7.57588 7.80353 7.93751 8.34494 8.85168 9.21251 9.53387 10.98261 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.005524 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.926189 B = 5067.945787 C = 5955.688746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.076 3.924 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.235 3.765 10 O -0.336 6.336 11 C 0.458 3.542 12 O -0.487 6.487 13 C 0.067 3.933 14 O -0.357 6.357 15 C 0.083 3.917 16 C -0.151 4.151 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.093 4.093 23 H 0.262 0.738 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 -6.505 11.719 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.129 4.129 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.201 3.799 10 O -0.253 6.253 11 C 0.298 3.702 12 O -0.374 6.374 13 C -0.011 4.011 14 O -0.276 6.276 15 C 0.025 3.975 16 C -0.189 4.189 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.191 4.191 21 C -0.191 4.191 22 C -0.131 4.131 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.616 -6.318 11.682 13.379 hybrid contribution 0.150 1.020 0.043 1.032 sum -1.467 -5.298 11.725 12.949 Atomic orbital electron populations 1.70013 1.05869 1.26961 1.47497 1.25053 0.94835 0.99252 0.93808 0.86628 0.80421 0.83144 0.78204 1.20420 1.21086 1.19511 1.21202 0.93778 0.89714 1.50942 0.91656 1.20584 0.88335 0.92659 0.78322 1.86381 1.42397 1.81816 1.14692 1.22437 0.86754 0.74980 0.85993 1.90590 1.15794 1.43335 1.87700 1.21824 0.91311 1.02352 0.85625 1.88063 1.32296 1.93706 1.13488 1.22839 0.96101 0.95538 0.83052 1.22959 1.01771 0.98421 0.95729 1.22429 0.97689 0.99845 0.96030 1.22333 0.98347 0.97594 0.97770 1.22217 1.00227 0.97996 0.95657 1.23490 0.97120 0.98889 0.99592 1.23044 0.98757 0.97805 0.99468 1.22729 1.00317 0.92206 0.97833 0.92854 0.90039 0.90387 0.91823 0.90080 0.91415 0.91564 0.91432 0.91661 0.91273 0.91116 0.90048 0.90080 0.93011 0.91437 0.92873 0.91850 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.68 12.78 55.43 0.71 -23.97 16 2 C 0.08 2.13 5.40 -17.82 -0.10 2.04 16 3 Si 0.89 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.73 7.31 -34.44 -0.25 -14.98 16 8 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 9 C 0.24 6.03 0.33 -90.96 -0.03 6.00 16 10 O -0.34 -8.55 9.86 -39.25 -0.39 -8.94 16 11 C 0.46 10.96 7.40 36.01 0.27 11.23 16 12 O -0.49 -13.19 14.64 -25.47 -0.37 -13.56 16 13 C 0.07 1.21 6.37 36.01 0.23 1.44 16 14 O -0.36 -6.44 9.43 -55.18 -0.52 -6.96 16 15 C 0.08 1.10 3.38 -25.62 -0.09 1.01 16 16 C -0.15 -1.84 6.56 -25.04 -0.16 -2.01 16 17 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 18 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 19 C -0.12 -1.42 6.61 -25.61 -0.17 -1.59 16 20 C -0.15 -3.45 6.91 -25.83 -0.18 -3.62 16 21 C -0.15 -3.01 8.03 -25.83 -0.21 -3.22 16 22 C -0.09 -2.14 7.06 -25.92 -0.18 -2.32 16 23 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 24 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 26 H 0.06 0.73 7.81 -51.93 -0.41 0.32 16 27 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 35 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 36 H 0.05 1.17 7.35 -51.93 -0.38 0.79 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.91 8.09 -51.93 -0.42 1.49 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -32.06 329.73 -8.49 -40.56 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.65 Total: -0.20 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.21 Total: -8.80 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.71 Total: -23.97 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.28 Total: -29.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.06 -8.49 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.049 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds