Wall clock time and date at job start Mon Mar 30 2020 06:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47130 * 270.00248 * 3 2 1 5 5 H 1.48493 * 109.47189 * 30.00686 * 3 2 1 6 6 H 1.48504 * 109.46664 * 150.00773 * 3 2 1 7 7 C 1.37874 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00181 * 173.72185 * 7 2 1 9 9 C 1.50701 * 119.99875 * 353.99557 * 7 2 1 10 10 O 1.45204 * 112.84938 * 299.63780 * 9 7 2 11 11 C 1.34227 * 116.99992 * 294.73409 * 10 9 7 12 12 O 1.20822 * 120.00251 * 4.56731 * 11 10 9 13 13 C 1.50704 * 119.99709 * 184.56606 * 11 10 9 14 14 O 1.42903 * 109.46933 * 180.02562 * 13 11 10 15 15 C 1.42903 * 113.99893 * 179.97438 * 14 13 11 16 16 C 1.54263 * 110.03143 * 267.90516 * 15 14 13 17 17 C 1.54958 * 104.15902 * 217.13537 * 16 15 14 18 18 C 1.54885 * 102.77759 * 37.89067 * 17 16 15 19 19 C 1.53869 * 110.02837 * 150.68694 * 15 14 13 20 20 C 1.53783 * 113.61237 * 168.44490 * 9 7 2 21 21 C 1.53955 * 87.01759 * 220.04600 * 20 9 7 22 22 C 1.53773 * 87.11436 * 25.36311 * 21 20 9 23 23 H 0.96996 * 119.99998 * 5.04250 * 1 2 3 24 24 H 1.09003 * 109.46752 * 299.99989 * 13 11 10 25 25 H 1.08996 * 109.46978 * 59.99957 * 13 11 10 26 26 H 1.09004 * 110.01475 * 29.29909 * 15 14 13 27 27 H 1.09001 * 110.48802 * 335.78868 * 16 15 14 28 28 H 1.09007 * 110.48500 * 98.42442 * 16 15 14 29 29 H 1.09000 * 110.72352 * 279.57290 * 17 16 15 30 30 H 1.09002 * 110.92143 * 156.29576 * 17 16 15 31 31 H 1.08999 * 110.48803 * 203.40313 * 18 17 16 32 32 H 1.08998 * 110.59989 * 80.81621 * 18 17 16 33 33 H 1.09001 * 110.03537 * 238.56385 * 19 15 14 34 34 H 1.09000 * 110.03650 * 0.02562 * 19 15 14 35 35 H 1.08997 * 113.61562 * 334.56258 * 20 9 7 36 36 H 1.08998 * 113.61343 * 105.47255 * 20 9 7 37 37 H 1.09006 * 113.53813 * 270.81316 * 21 20 9 38 38 H 1.09003 * 113.74542 * 139.94605 * 21 20 9 39 39 H 1.09000 * 113.62101 * 220.08995 * 22 21 20 40 40 H 1.09001 * 113.69195 * 89.19663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1028 9 6 1.2572 -2.4956 0.1354 10 8 0.5115 -2.5905 1.3777 11 6 1.2236 -2.6206 2.5151 12 8 2.4238 -2.4865 2.4802 13 6 0.5259 -2.8218 3.8357 14 8 1.4907 -2.8159 4.8899 15 6 0.9305 -2.9996 6.1916 16 6 0.6154 -1.6307 6.8293 17 6 0.9590 -1.8226 8.3280 18 6 2.2229 -2.7165 8.2779 19 6 1.9519 -3.6900 7.1123 20 6 2.1184 -3.7344 -0.1623 21 6 0.8895 -4.3157 -0.8847 22 6 0.4317 -2.8649 -1.1084 23 1 -0.4850 0.8368 -0.0738 24 1 -0.1904 -2.0156 3.9947 25 1 0.0017 -3.7773 3.8278 26 1 0.0223 -3.5988 6.1257 27 1 1.2406 -0.8528 6.3912 28 1 -0.4400 -1.3869 6.7072 29 1 0.1468 -2.3307 8.8480 30 1 1.1807 -0.8665 8.8021 31 1 2.3401 -3.2642 9.2130 32 1 3.1096 -2.1159 8.0750 33 1 1.5391 -4.6238 7.4941 34 1 2.8750 -3.8845 6.5664 35 1 2.9596 -3.5323 -0.8253 36 1 2.4054 -4.2912 0.7297 37 1 0.2295 -4.8860 -0.2309 38 1 1.1317 -4.8442 -1.8068 39 1 -0.6410 -2.7205 -0.9791 40 1 0.8100 -2.4234 -2.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810855977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:57 Heat of formation + Delta-G solvation = -135.360586 kcal Electronic energy + Delta-G solvation = -21232.937753 eV Core-core repulsion = 18012.645736 eV Total energy + Delta-G solvation = -3220.292017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31220 -39.99042 -38.71824 -36.77218 -35.93745 -34.45537 -30.16758 -29.59627 -28.53343 -27.82673 -26.36379 -24.47025 -22.21997 -21.64063 -21.30477 -19.99885 -19.08074 -18.05045 -17.68916 -17.21899 -16.73821 -16.68148 -16.30060 -15.95141 -15.41146 -15.30478 -14.76625 -14.26197 -14.23131 -13.57092 -13.38802 -13.17223 -13.03879 -12.89531 -12.84194 -12.47313 -12.35783 -12.06085 -12.02931 -11.95081 -11.83488 -11.69710 -11.53464 -11.48864 -11.06396 -10.91118 -10.59719 -10.46574 -10.28304 -8.19322 -6.34610 1.30231 1.33742 1.44516 1.59816 1.77249 2.34675 2.98459 3.17994 3.64609 3.66347 3.85390 3.97550 4.02251 4.08387 4.15647 4.23684 4.32738 4.38002 4.52254 4.56028 4.65225 4.71780 4.78748 4.85607 4.94394 5.02474 5.04257 5.08802 5.12673 5.20501 5.28077 5.37285 5.45294 5.51195 5.62720 5.71259 5.93856 6.20571 6.37353 6.66202 7.26225 7.40475 8.84037 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019414 B = 0.005524 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.926189 B = 5067.945787 C = 5955.688746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.036 3.964 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.285 1.285 7 C -0.540 4.540 8 H 0.042 0.958 9 C 0.208 3.792 10 O -0.344 6.344 11 C 0.446 3.554 12 O -0.530 6.530 13 C 0.078 3.922 14 O -0.388 6.388 15 C 0.071 3.929 16 C -0.155 4.155 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.152 4.152 21 C -0.124 4.124 22 C -0.092 4.092 23 H 0.265 0.735 24 H 0.094 0.906 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -7.492 12.890 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.061 0.939 9 C 0.173 3.827 10 O -0.261 6.261 11 C 0.289 3.711 12 O -0.419 6.419 13 C 0.001 3.999 14 O -0.308 6.308 15 C 0.015 3.985 16 C -0.193 4.193 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.190 4.190 21 C -0.161 4.161 22 C -0.130 4.130 23 H 0.074 0.926 24 H 0.112 0.888 25 H 0.135 0.865 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.842 -7.308 12.853 15.056 hybrid contribution 0.565 1.321 -0.263 1.460 sum -2.277 -5.987 12.590 14.125 Atomic orbital electron populations 1.70068 1.06543 1.27701 1.48039 1.25634 0.95674 1.01743 0.93639 0.85838 0.78621 0.80124 0.78874 1.18649 1.20240 1.21040 1.21364 0.92975 0.91805 1.51597 0.93950 1.20876 0.89848 0.92684 0.79275 1.86356 1.42572 1.81841 1.15305 1.23616 0.86676 0.73428 0.87368 1.90558 1.17733 1.45312 1.88328 1.21810 0.90602 1.04699 0.82766 1.88043 1.33498 1.94126 1.15176 1.23245 0.97551 0.96669 0.81067 1.22977 1.01861 0.97045 0.97399 1.22432 0.98111 1.00405 0.94279 1.22353 0.97969 0.97409 0.98249 1.22278 0.98893 0.99387 0.95566 1.23439 0.98008 0.97814 0.99701 1.22903 0.96506 0.96047 1.00674 1.22664 0.99202 0.94705 0.96382 0.92566 0.88823 0.86542 0.89282 0.93059 0.90266 0.89318 0.90833 0.89229 0.92777 0.88521 0.92396 0.90248 0.93707 0.89961 0.89447 0.92811 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.84 12.78 21.45 0.27 -50.57 16 2 C 0.04 2.07 5.40 84.65 0.46 2.52 16 3 Si 0.94 45.65 29.55 68.60 2.03 47.68 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.54 -31.47 7.31 25.60 0.19 -31.28 16 8 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.21 10.76 0.33 -11.01 0.00 10.76 16 10 O -0.34 -17.61 9.86 -51.38 -0.51 -18.12 16 11 C 0.45 21.59 7.40 71.24 0.53 22.11 16 12 O -0.53 -29.60 14.64 28.41 0.42 -29.19 16 13 C 0.08 2.77 6.37 71.24 0.45 3.23 16 14 O -0.39 -13.91 9.43 -129.90 -1.22 -15.14 16 15 C 0.07 1.77 3.38 31.32 0.11 1.88 16 16 C -0.15 -3.58 6.56 31.69 0.21 -3.38 16 17 C -0.11 -1.96 6.91 31.91 0.22 -1.74 16 18 C -0.12 -2.21 6.83 31.67 0.22 -2.00 16 19 C -0.12 -2.64 6.61 31.32 0.21 -2.43 16 20 C -0.15 -6.81 6.91 31.18 0.22 -6.60 16 21 C -0.12 -4.62 8.03 31.18 0.25 -4.37 16 22 C -0.09 -4.18 7.06 31.12 0.22 -3.96 16 23 H 0.27 14.37 8.32 -92.71 -0.77 13.60 16 24 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.12 3.19 8.10 -2.39 -0.02 3.17 16 26 H 0.09 1.74 7.81 -2.38 -0.02 1.73 16 27 H 0.05 1.48 8.08 -2.39 -0.02 1.46 16 28 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.50 7.95 -2.39 -0.02 1.49 16 35 H 0.08 3.51 8.09 -2.39 -0.02 3.49 16 36 H 0.04 2.03 7.35 -2.39 -0.02 2.01 16 37 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.08 3.56 8.09 -2.39 -0.02 3.54 16 Total: -1.00 -71.27 329.73 5.25 -66.02 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.00 Total: 14.55 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 3.27 Total: -15.24 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.27 Total: -50.57 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -1.32 Total: -62.44 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -71.27 5.25 -66.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.338 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds