Wall clock time and date at job start Mon Mar 30 2020 07:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.57541 * 2 1 4 4 C 1.53092 * 109.52558 * 239.84224 * 2 1 3 5 5 O 1.42901 * 109.41857 * 182.48662 * 4 2 1 6 6 C 1.42903 * 114.09809 * 61.15618 * 5 4 2 7 7 C 1.53090 * 109.41285 * 298.84461 * 6 5 4 8 8 C 1.53166 * 109.16737 * 57.60985 * 7 6 5 9 9 H 1.09000 * 109.54440 * 62.97289 * 8 7 6 10 10 C 1.50702 * 109.54683 * 183.15032 * 8 7 6 11 11 O 1.20827 * 119.99867 * 84.86541 * 10 8 7 12 12 O 1.34224 * 119.99699 * 264.86721 * 10 8 7 13 13 C 1.45207 * 116.99938 * 180.30358 * 12 10 8 14 14 C 1.50701 * 112.84633 * 297.17590 * 13 12 10 15 15 H 1.08005 * 119.99915 * 120.22403 * 14 13 12 16 16 C 1.37878 * 120.00067 * 300.22590 * 14 13 12 17 17 N 1.31520 * 119.99664 * 173.24261 * 16 14 13 18 18 Si 1.86797 * 119.99970 * 353.24808 * 16 14 13 19 19 H 1.48503 * 109.46934 * 275.18070 * 18 16 14 20 20 H 1.48497 * 109.46805 * 155.18722 * 18 16 14 21 21 H 1.48497 * 109.47417 * 35.18237 * 18 16 14 22 22 C 1.53781 * 113.61262 * 68.36870 * 13 12 10 23 23 C 1.53953 * 87.01661 * 89.23400 * 22 13 12 24 24 C 1.53770 * 113.61648 * 165.97978 * 13 12 10 25 25 H 1.09000 * 109.47574 * 299.84139 * 1 2 3 26 26 H 1.08999 * 109.47486 * 59.84470 * 1 2 3 27 27 H 1.09007 * 109.47060 * 179.84392 * 1 2 3 28 28 H 1.08998 * 109.48013 * 62.50014 * 4 2 1 29 29 H 1.09001 * 109.47805 * 302.46875 * 4 2 1 30 30 H 1.09002 * 109.47801 * 178.86387 * 6 5 4 31 31 H 1.08994 * 109.47870 * 58.83097 * 6 5 4 32 32 H 1.09005 * 109.52252 * 297.69787 * 7 6 5 33 33 H 1.09005 * 109.51930 * 177.51971 * 7 6 5 34 34 H 0.96999 * 119.99623 * 180.02562 * 17 16 14 35 35 H 1.08999 * 113.61146 * 203.75181 * 22 13 12 36 36 H 1.08998 * 113.61761 * 334.65711 * 22 13 12 37 37 H 1.09003 * 113.53967 * 270.80570 * 23 22 13 38 38 H 1.09000 * 113.66652 * 139.93420 * 23 22 13 39 39 H 1.09000 * 113.61757 * 25.34664 * 24 13 12 40 40 H 1.09008 * 113.61595 * 156.16926 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0957 7 6 3.5715 -0.7871 1.1982 8 6 2.0419 -0.7253 1.2483 9 1 1.6368 -1.7368 1.2758 10 6 1.6078 0.0252 2.4810 11 8 1.5419 1.2316 2.4619 12 8 1.2944 -0.6465 3.6000 13 6 0.8780 0.1410 4.7467 14 6 1.9586 1.0656 5.2451 15 1 1.7894 2.1321 5.2663 16 6 3.1633 0.5501 5.6741 17 7 4.1525 1.3600 5.9830 18 14 3.3905 -1.2986 5.8163 19 1 2.8822 -1.7598 7.1332 20 1 4.8331 -1.6304 5.6989 21 1 2.6369 -1.9750 4.7303 22 6 -0.4840 0.8299 4.5591 23 6 -1.1192 -0.4464 5.1404 24 6 0.2183 -0.6913 5.8587 25 1 -0.3634 0.5113 0.8914 26 1 -0.3634 0.5162 -0.8886 27 1 -0.3633 -1.0277 -0.0028 28 1 1.7159 -0.1885 -2.1388 29 1 1.6431 -1.7392 -1.2676 30 1 5.0926 -1.4903 -0.1571 31 1 3.6316 -2.5058 -0.1007 32 1 3.9780 0.2241 1.2224 33 1 3.9417 -1.3500 2.0551 34 1 5.0001 0.9973 6.2844 35 1 -0.6185 1.7099 5.1880 36 1 -0.7418 1.0107 3.5156 37 1 -1.3540 -1.1979 4.3866 38 1 -1.9500 -0.2518 5.8186 39 1 0.5265 -1.7368 5.8630 40 1 0.2773 -0.2286 6.8440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:29 Heat of formation + Delta-G solvation = -115.458319 kcal Electronic energy + Delta-G solvation = -22332.660376 eV Core-core repulsion = 19113.231386 eV Total energy + Delta-G solvation = -3219.428990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23866 -39.02322 -37.18255 -34.50218 -34.06840 -32.38361 -32.09072 -27.32683 -26.84241 -25.75574 -24.96638 -22.55529 -22.24188 -21.24797 -19.47978 -18.34766 -17.38218 -16.40855 -16.15793 -15.65083 -15.25596 -15.05312 -14.61919 -14.49407 -14.28071 -13.66715 -13.55102 -12.99075 -12.63329 -12.54505 -12.10614 -11.96810 -11.79327 -11.57722 -11.47903 -11.20766 -11.08428 -10.89160 -10.55268 -10.34245 -10.33319 -10.27037 -10.05606 -9.88568 -9.70771 -9.24397 -8.95923 -8.70784 -8.40712 -6.17968 -4.21961 3.18934 3.26026 3.36708 3.46002 3.65873 3.90318 4.39275 4.68406 4.83589 4.91636 5.05884 5.14257 5.22789 5.38411 5.41599 5.42681 5.52273 5.58922 5.60359 5.63012 5.68945 5.81061 5.88251 5.91098 6.07066 6.21636 6.23377 6.26148 6.27560 6.45997 6.54836 6.58926 6.72558 6.94493 7.17944 7.22426 7.46553 7.79913 8.40914 8.87179 8.99662 9.44645 10.93132 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.008236 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.018235 B = 3399.082332 C = 4166.190182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 H 0.095 0.905 4 C 0.069 3.931 5 O -0.383 6.383 6 C 0.066 3.934 7 C -0.148 4.148 8 C -0.081 4.081 9 H 0.091 0.909 10 C 0.465 3.535 11 O -0.487 6.487 12 O -0.357 6.357 13 C 0.194 3.806 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.083 3.917 17 N -0.882 5.882 18 Si 0.857 3.143 19 H -0.276 1.276 20 H -0.292 1.292 21 H -0.235 1.235 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.127 4.127 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 -8.040 -10.661 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 H 0.113 0.887 4 C -0.007 4.007 5 O -0.302 6.302 6 C -0.011 4.011 7 C -0.186 4.186 8 C -0.101 4.101 9 H 0.110 0.890 10 C 0.306 3.694 11 O -0.373 6.373 12 O -0.274 6.274 13 C 0.159 3.841 14 C -0.549 4.549 15 H 0.100 0.900 16 C -0.122 4.122 17 N -0.519 5.519 18 Si 0.684 3.316 19 H -0.202 1.202 20 H -0.219 1.219 21 H -0.158 1.158 22 C -0.176 4.176 23 C -0.182 4.182 24 C -0.165 4.165 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.433 -7.562 -10.698 14.183 hybrid contribution 0.178 -0.925 0.604 1.119 sum -5.255 -8.486 -10.095 14.196 Atomic orbital electron populations 1.21783 0.94222 1.01788 1.02699 1.21715 0.96614 1.01636 0.93347 0.88693 1.22646 0.81017 0.99460 0.97616 1.87917 1.20310 1.76534 1.45403 1.22584 0.99246 0.94294 0.84972 1.22160 0.93592 1.03762 0.99079 1.21100 0.97165 1.00263 0.91584 0.89042 1.22751 0.75170 0.87203 0.84260 1.90606 1.47664 1.15145 1.83891 1.86510 1.76349 1.43483 1.21096 1.21034 0.92790 0.89000 0.81276 1.21029 0.97733 0.94584 1.41576 0.89985 1.24996 0.95345 0.98020 0.93814 1.69953 1.03208 1.35260 1.43475 0.87193 0.77293 0.86915 0.80237 1.20167 1.21866 1.15795 1.23283 0.97116 0.96956 1.00220 1.22936 0.96835 0.98726 0.99724 1.23201 0.94944 0.99632 0.98720 0.91774 0.92183 0.92675 0.88619 0.93152 0.88433 0.93029 0.89733 0.89988 0.92499 0.89602 0.92594 0.91094 0.92285 0.92509 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.99 37.15 0.33 -1.57 16 2 C -0.11 -1.65 2.14 -90.48 -0.19 -1.84 16 3 H 0.09 1.58 7.76 -51.93 -0.40 1.18 16 4 C 0.07 0.83 6.13 37.21 0.23 1.06 16 5 O -0.38 -5.32 10.77 -35.23 -0.38 -5.70 16 6 C 0.07 0.84 6.84 37.20 0.25 1.10 16 7 C -0.15 -2.39 5.40 -26.60 -0.14 -2.54 16 8 C -0.08 -1.36 2.21 -91.59 -0.20 -1.56 16 9 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 10 C 0.47 10.12 5.41 36.01 0.19 10.32 16 11 O -0.49 -12.07 14.01 -18.75 -0.26 -12.33 16 12 O -0.36 -8.23 7.57 -39.24 -0.30 -8.53 16 13 C 0.19 4.61 0.10 -90.96 -0.01 4.60 16 14 C -0.51 -14.55 7.85 -34.44 -0.27 -14.82 16 15 H 0.08 2.60 8.06 -52.48 -0.42 2.17 16 16 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 17 N -0.88 -26.96 13.96 55.43 0.77 -26.19 16 18 Si 0.86 21.18 25.17 -169.99 -4.28 16.90 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.23 -5.52 5.63 56.52 0.32 -5.21 16 22 C -0.14 -2.89 6.93 -25.83 -0.18 -3.07 16 23 C -0.14 -2.58 8.03 -25.83 -0.21 -2.79 16 24 C -0.13 -2.65 5.83 -25.93 -0.15 -2.80 16 25 H 0.06 0.99 7.09 -51.93 -0.37 0.62 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 36 H 0.06 1.16 7.43 -51.93 -0.39 0.77 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.15 7.10 -51.93 -0.37 0.78 16 40 H 0.10 1.97 8.09 -51.92 -0.42 1.55 16 LS Contribution 314.14 15.07 4.73 4.73 Total: -1.00 -32.37 314.14 -6.81 -39.18 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.66 Total: 3.58 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.44 Total: -11.64 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.94 Total: -26.57 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.28 Total: 16.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.37 -6.81 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.274 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds