Wall clock time and date at job start Mon Mar 30 2020 07:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.57541 * 2 1 4 4 C 1.53092 * 109.52558 * 239.84224 * 2 1 3 5 5 O 1.42901 * 109.41857 * 182.48662 * 4 2 1 6 6 C 1.42903 * 114.09809 * 61.15618 * 5 4 2 7 7 C 1.53090 * 109.41285 * 298.84461 * 6 5 4 8 8 C 1.53166 * 109.16737 * 57.60985 * 7 6 5 9 9 H 1.09000 * 109.54440 * 62.97289 * 8 7 6 10 10 C 1.50702 * 109.54683 * 183.15032 * 8 7 6 11 11 O 1.20827 * 119.99867 * 84.86541 * 10 8 7 12 12 O 1.34224 * 119.99699 * 264.86721 * 10 8 7 13 13 C 1.45207 * 116.99938 * 180.30358 * 12 10 8 14 14 C 1.50701 * 112.84633 * 297.17590 * 13 12 10 15 15 H 1.08005 * 119.99915 * 120.22403 * 14 13 12 16 16 C 1.37878 * 120.00067 * 300.22590 * 14 13 12 17 17 N 1.31520 * 119.99664 * 173.24261 * 16 14 13 18 18 Si 1.86797 * 119.99970 * 353.24808 * 16 14 13 19 19 H 1.48503 * 109.46934 * 275.18070 * 18 16 14 20 20 H 1.48497 * 109.46805 * 155.18722 * 18 16 14 21 21 H 1.48497 * 109.47417 * 35.18237 * 18 16 14 22 22 C 1.53781 * 113.61262 * 68.36870 * 13 12 10 23 23 C 1.53953 * 87.01661 * 89.23400 * 22 13 12 24 24 C 1.53770 * 113.61648 * 165.97978 * 13 12 10 25 25 H 1.09000 * 109.47574 * 299.84139 * 1 2 3 26 26 H 1.08999 * 109.47486 * 59.84470 * 1 2 3 27 27 H 1.09007 * 109.47060 * 179.84392 * 1 2 3 28 28 H 1.08998 * 109.48013 * 62.50014 * 4 2 1 29 29 H 1.09001 * 109.47805 * 302.46875 * 4 2 1 30 30 H 1.09002 * 109.47801 * 178.86387 * 6 5 4 31 31 H 1.08994 * 109.47870 * 58.83097 * 6 5 4 32 32 H 1.09005 * 109.52252 * 297.69787 * 7 6 5 33 33 H 1.09005 * 109.51930 * 177.51971 * 7 6 5 34 34 H 0.96999 * 119.99623 * 180.02562 * 17 16 14 35 35 H 1.08999 * 113.61146 * 203.75181 * 22 13 12 36 36 H 1.08998 * 113.61761 * 334.65711 * 22 13 12 37 37 H 1.09003 * 113.53967 * 270.80570 * 23 22 13 38 38 H 1.09000 * 113.66652 * 139.93420 * 23 22 13 39 39 H 1.09000 * 113.61757 * 25.34664 * 24 13 12 40 40 H 1.09008 * 113.61595 * 156.16926 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0957 7 6 3.5715 -0.7871 1.1982 8 6 2.0419 -0.7253 1.2483 9 1 1.6368 -1.7368 1.2758 10 6 1.6078 0.0252 2.4810 11 8 1.5419 1.2316 2.4619 12 8 1.2944 -0.6465 3.6000 13 6 0.8780 0.1410 4.7467 14 6 1.9586 1.0656 5.2451 15 1 1.7894 2.1321 5.2663 16 6 3.1633 0.5501 5.6741 17 7 4.1525 1.3600 5.9830 18 14 3.3905 -1.2986 5.8163 19 1 2.8822 -1.7598 7.1332 20 1 4.8331 -1.6304 5.6989 21 1 2.6369 -1.9750 4.7303 22 6 -0.4840 0.8299 4.5591 23 6 -1.1192 -0.4464 5.1404 24 6 0.2183 -0.6913 5.8587 25 1 -0.3634 0.5113 0.8914 26 1 -0.3634 0.5162 -0.8886 27 1 -0.3633 -1.0277 -0.0028 28 1 1.7159 -0.1885 -2.1388 29 1 1.6431 -1.7392 -1.2676 30 1 5.0926 -1.4903 -0.1571 31 1 3.6316 -2.5058 -0.1007 32 1 3.9780 0.2241 1.2224 33 1 3.9417 -1.3500 2.0551 34 1 5.0001 0.9973 6.2844 35 1 -0.6185 1.7099 5.1880 36 1 -0.7418 1.0107 3.5156 37 1 -1.3540 -1.1979 4.3866 38 1 -1.9500 -0.2518 5.8186 39 1 0.5265 -1.7368 5.8630 40 1 0.2773 -0.2286 6.8440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:28 Heat of formation + Delta-G solvation = -136.670388 kcal Electronic energy + Delta-G solvation = -22333.580201 eV Core-core repulsion = 19113.231386 eV Total energy + Delta-G solvation = -3220.348815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.81410 -40.38751 -38.80001 -36.18050 -35.40457 -34.59037 -33.24000 -29.13635 -28.14179 -26.98811 -26.64706 -24.31706 -23.37234 -22.73078 -20.79473 -20.12406 -19.32746 -17.98467 -17.40214 -17.14672 -17.02777 -16.52820 -16.18060 -15.79487 -15.62717 -15.05274 -15.02940 -14.85884 -14.35849 -13.79111 -13.57016 -13.32598 -13.25982 -13.10340 -13.01958 -12.90847 -12.49740 -12.13384 -12.10619 -12.00624 -11.89011 -11.69186 -11.63953 -11.49543 -11.16719 -11.00215 -10.70361 -10.44539 -10.37527 -8.40909 -6.50482 1.27529 1.30103 1.51035 1.56094 2.00698 2.31304 2.92885 2.97161 3.48423 3.63612 3.65921 3.81400 3.85354 3.94890 4.09331 4.17539 4.21206 4.35207 4.40579 4.50073 4.54506 4.60777 4.69341 4.77914 4.79198 4.87051 4.90433 5.00363 5.01210 5.03568 5.05625 5.21843 5.27072 5.29742 5.51394 5.56220 5.85416 6.21510 6.31292 6.55615 7.14261 7.24825 8.74919 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.008236 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.018235 B = 3399.082332 C = 4166.190182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.059 0.941 4 C 0.072 3.928 5 O -0.399 6.399 6 C 0.073 3.927 7 C -0.150 4.150 8 C -0.078 4.078 9 H 0.123 0.877 10 C 0.457 3.543 11 O -0.530 6.530 12 O -0.355 6.355 13 C 0.175 3.825 14 C -0.519 4.519 15 H 0.023 0.977 16 C 0.025 3.975 17 N -0.937 5.937 18 Si 0.921 3.079 19 H -0.257 1.257 20 H -0.293 1.293 21 H -0.212 1.212 22 C -0.143 4.143 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.029 0.971 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.267 0.733 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 -12.087 -12.264 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.077 0.923 4 C -0.004 4.004 5 O -0.318 6.318 6 C -0.004 4.004 7 C -0.188 4.188 8 C -0.097 4.097 9 H 0.141 0.859 10 C 0.300 3.700 11 O -0.419 6.419 12 O -0.272 6.272 13 C 0.140 3.860 14 C -0.557 4.557 15 H 0.041 0.959 16 C -0.175 4.175 17 N -0.576 5.576 18 Si 0.743 3.257 19 H -0.182 1.182 20 H -0.220 1.220 21 H -0.134 1.134 22 C -0.181 4.181 23 C -0.151 4.151 24 C -0.164 4.164 25 H 0.049 0.951 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.059 -11.615 -12.310 18.338 hybrid contribution 0.676 0.527 1.067 1.369 sum -6.383 -11.089 -11.243 17.032 Atomic orbital electron populations 1.21757 0.92867 1.03277 1.02125 1.21728 0.97763 0.99864 0.93739 0.92281 1.22799 0.80045 1.00986 0.96556 1.87911 1.21521 1.76949 1.45384 1.22649 1.00279 0.94965 0.82482 1.22206 0.93124 1.02190 1.01325 1.21305 0.97562 1.01247 0.89581 0.85877 1.23908 0.73733 0.87202 0.85111 1.90595 1.49361 1.17348 1.84563 1.86476 1.76561 1.42960 1.21234 1.21154 0.92097 0.90146 0.82623 1.21162 0.99721 0.92872 1.41897 0.95888 1.25933 0.94711 1.03524 0.93284 1.70114 1.04037 1.37833 1.45636 0.86193 0.77427 0.80365 0.81676 1.18192 1.21957 1.13422 1.23265 0.96324 0.98399 1.00094 1.22826 0.96211 0.96366 0.99736 1.23190 0.96160 0.99619 0.97477 0.95141 0.90002 0.90063 0.86577 0.90100 0.87044 0.89901 0.93301 0.90610 0.92409 0.90857 0.93089 0.88926 0.88978 0.91006 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.99 71.98 0.65 -2.73 16 2 C -0.11 -3.07 2.14 -10.70 -0.02 -3.09 16 3 H 0.06 2.03 7.76 -2.39 -0.02 2.01 16 4 C 0.07 1.46 6.13 72.01 0.44 1.91 16 5 O -0.40 -9.94 10.77 -148.98 -1.60 -11.55 16 6 C 0.07 1.65 6.84 72.01 0.49 2.14 16 7 C -0.15 -4.74 5.40 30.68 0.17 -4.58 16 8 C -0.08 -2.48 2.21 -11.42 -0.03 -2.50 16 9 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 10 C 0.46 20.06 5.41 71.24 0.39 20.44 16 11 O -0.53 -27.75 14.01 21.96 0.31 -27.44 16 12 O -0.35 -16.01 7.57 -51.36 -0.39 -16.40 16 13 C 0.17 8.34 0.10 -11.02 0.00 8.34 16 14 C -0.52 -31.04 7.85 25.60 0.20 -30.84 16 15 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 16 C 0.02 1.48 5.47 84.65 0.46 1.94 16 17 N -0.94 -60.35 13.96 21.45 0.30 -60.05 16 18 Si 0.92 43.70 25.17 68.60 1.73 45.43 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.21 -9.19 5.63 99.48 0.56 -8.63 16 22 C -0.14 -6.00 6.93 31.18 0.22 -5.78 16 23 C -0.11 -3.69 8.03 31.18 0.25 -3.44 16 24 C -0.13 -4.99 5.83 31.12 0.18 -4.80 16 25 H 0.03 0.92 7.09 -2.39 -0.02 0.90 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 35 H 0.07 3.19 8.09 -2.39 -0.02 3.17 16 36 H 0.05 2.15 7.43 -2.39 -0.02 2.13 16 37 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 39 H 0.07 2.61 7.10 -2.39 -0.02 2.59 16 40 H 0.09 3.63 8.09 -2.38 -0.02 3.61 16 Total: -1.00 -76.76 314.14 4.59 -72.16 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.86 Total: 20.85 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 3.39 Total: -23.00 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.30 Total: -60.05 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -1.69 Total: -55.39 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.73 Total: 45.43 kcal Total: -76.76 4.59 -72.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.506 kcal (2) G-P(sol) polarization free energy of solvation -76.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds