Wall clock time and date at job start Mon Mar 30 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.57087 * 2 1 4 4 C 1.53082 * 109.52314 * 120.16151 * 2 1 3 5 5 O 1.42915 * 109.41455 * 177.51767 * 4 2 1 6 6 C 1.42900 * 114.09411 * 298.83988 * 5 4 2 7 7 C 1.53110 * 109.48649 * 61.11073 * 6 5 4 8 8 C 1.53171 * 109.15898 * 302.52242 * 7 6 5 9 9 H 1.08994 * 109.54704 * 296.93566 * 8 7 6 10 10 C 1.50698 * 109.54369 * 176.75741 * 8 7 6 11 11 O 1.20831 * 120.00198 * 275.44041 * 10 8 7 12 12 O 1.34228 * 120.00018 * 95.43965 * 10 8 7 13 13 C 1.45202 * 117.00176 * 182.61929 * 12 10 8 14 14 C 1.50696 * 112.85075 * 295.55900 * 13 12 10 15 15 H 1.07993 * 120.00478 * 114.89651 * 14 13 12 16 16 C 1.37879 * 119.99645 * 294.88916 * 14 13 12 17 17 N 1.31519 * 120.00264 * 4.87525 * 16 14 13 18 18 Si 1.86800 * 120.00071 * 185.14422 * 16 14 13 19 19 H 1.48501 * 109.47340 * 179.72750 * 18 16 14 20 20 H 1.48501 * 109.47303 * 299.72881 * 18 16 14 21 21 H 1.48499 * 109.47046 * 59.72891 * 18 16 14 22 22 C 1.53786 * 113.61273 * 66.75047 * 13 12 10 23 23 C 1.53952 * 87.01661 * 89.22748 * 22 13 12 24 24 C 1.53777 * 87.11444 * 25.36602 * 23 22 13 25 25 H 1.09002 * 109.46944 * 177.34517 * 1 2 3 26 26 H 1.09004 * 109.47351 * 297.34208 * 1 2 3 27 27 H 1.09000 * 109.47562 * 57.34715 * 1 2 3 28 28 H 1.09004 * 109.48476 * 297.49676 * 4 2 1 29 29 H 1.08999 * 109.48139 * 57.53607 * 4 2 1 30 30 H 1.09000 * 109.48315 * 181.13903 * 6 5 4 31 31 H 1.09003 * 109.48324 * 301.16520 * 6 5 4 32 32 H 1.08999 * 109.59666 * 182.57395 * 7 6 5 33 33 H 1.09003 * 109.45042 * 62.38833 * 7 6 5 34 34 H 0.97000 * 120.00241 * 174.94718 * 17 16 14 35 35 H 1.08993 * 113.61279 * 203.75122 * 22 13 12 36 36 H 1.09001 * 113.61171 * 334.65557 * 22 13 12 37 37 H 1.09000 * 113.54397 * 270.80912 * 23 22 13 38 38 H 1.09005 * 113.66271 * 139.93570 * 23 22 13 39 39 H 1.09001 * 113.61530 * 220.08992 * 24 23 22 40 40 H 1.08995 * 113.69776 * 89.19267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7249 1.2475 5 8 3.4695 -0.7743 1.2162 6 6 4.0044 -1.4815 0.0955 7 6 3.5715 -0.7888 -1.1995 8 6 2.0419 -0.7252 -1.2485 9 1 1.6355 -1.7361 -1.2752 10 6 1.6077 0.0254 -2.4810 11 8 1.5487 1.2322 -2.4641 12 8 1.2867 -0.6466 -3.5977 13 6 0.9338 0.1432 -4.7639 14 6 -0.3234 0.9501 -4.5657 15 1 -0.2776 2.0290 -4.5617 16 6 -1.5322 0.3107 -4.3897 17 7 -1.5755 -1.0007 -4.2987 18 14 -3.1094 1.3064 -4.2879 19 1 -4.2630 0.3893 -4.1051 20 1 -3.0320 2.2400 -3.1357 21 1 -3.2872 2.0815 -5.5420 22 6 2.1064 0.9596 -5.3328 23 6 2.4355 -0.2687 -6.2006 24 6 0.9524 -0.6559 -6.0777 25 1 -0.3633 -1.0266 -0.0476 26 1 -0.3634 0.4720 0.9129 27 1 -0.3634 0.5545 -0.8652 28 1 1.7159 -0.1886 2.1388 29 1 1.6432 -1.7393 1.2675 30 1 5.0926 -1.4902 0.1569 31 1 3.6318 -2.5058 0.1006 32 1 3.9402 -1.3525 -2.0564 33 1 3.9792 0.2218 -1.2244 34 1 -2.4145 -1.4458 -4.1018 35 1 1.7933 1.8302 -5.9090 36 1 2.8745 1.1927 -4.5953 37 1 3.1123 -0.9739 -5.7182 38 1 2.7385 -0.0177 -7.2172 39 1 0.7901 -1.7250 -5.9408 40 1 0.3220 -0.2286 -6.8575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:35 Heat of formation + Delta-G solvation = -123.849031 kcal Electronic energy + Delta-G solvation = -22205.724603 eV Core-core repulsion = 18985.931764 eV Total energy + Delta-G solvation = -3219.792839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03792 -38.79672 -36.95536 -34.22496 -33.87030 -32.35980 -32.01614 -27.06045 -26.44754 -25.63664 -24.57358 -22.69344 -22.16460 -21.07138 -19.28854 -18.19264 -17.19209 -16.27473 -16.03946 -15.38538 -15.04777 -14.75732 -14.60534 -14.46325 -13.97912 -13.63869 -13.46436 -13.07714 -12.36877 -12.19058 -11.85188 -11.72919 -11.56392 -11.33151 -11.21107 -11.07690 -10.90884 -10.73078 -10.53630 -10.42122 -10.21169 -10.10293 -9.99351 -9.92295 -9.60580 -9.08960 -8.80496 -8.49027 -8.34517 -6.08357 -4.19066 3.27249 3.31705 3.36171 3.44565 3.83741 3.98243 4.36919 4.81895 4.92035 5.04285 5.11984 5.26963 5.31466 5.50193 5.54001 5.68353 5.70480 5.73189 5.79972 5.81081 5.84708 5.96430 6.03727 6.12387 6.24215 6.29179 6.41751 6.47248 6.58496 6.69310 6.78302 6.82354 7.16648 7.22572 7.24880 7.52818 7.81289 7.93983 8.34489 8.83090 9.23280 9.50168 10.95863 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.007611 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.944203 B = 3677.954404 C = 4655.421068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 H 0.090 0.910 4 C 0.068 3.932 5 O -0.385 6.385 6 C 0.065 3.935 7 C -0.145 4.145 8 C -0.083 4.083 9 H 0.094 0.906 10 C 0.470 3.530 11 O -0.508 6.508 12 O -0.336 6.336 13 C 0.235 3.765 14 C -0.521 4.521 15 H 0.065 0.935 16 C 0.077 3.923 17 N -0.865 5.865 18 Si 0.888 3.112 19 H -0.286 1.286 20 H -0.275 1.275 21 H -0.274 1.274 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.096 4.096 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -3.006 6.329 10.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 H 0.108 0.892 4 C -0.009 4.009 5 O -0.304 6.304 6 C -0.012 4.012 7 C -0.183 4.183 8 C -0.102 4.102 9 H 0.112 0.888 10 C 0.312 3.688 11 O -0.397 6.397 12 O -0.251 6.251 13 C 0.201 3.799 14 C -0.558 4.558 15 H 0.083 0.917 16 C -0.129 4.129 17 N -0.502 5.502 18 Si 0.715 3.285 19 H -0.212 1.212 20 H -0.201 1.201 21 H -0.199 1.199 22 C -0.190 4.190 23 C -0.190 4.190 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.468 -2.735 6.364 10.186 hybrid contribution -1.235 0.437 -0.184 1.323 sum 6.233 -2.298 6.180 9.073 Atomic orbital electron populations 1.21786 0.93770 1.02333 1.02764 1.21654 0.97042 1.01055 0.93113 0.89162 1.22692 0.80596 0.99705 0.97858 1.87899 1.20640 1.76506 1.45331 1.22556 0.98936 0.94548 0.85124 1.22146 0.94064 1.02967 0.99094 1.21072 0.96316 1.00844 0.92006 0.88812 1.22666 0.74381 0.86932 0.84833 1.90552 1.49055 1.15629 1.84441 1.86423 1.75857 1.42766 1.20084 1.20579 0.91320 0.87687 0.80293 1.21142 0.90273 0.93078 1.51351 0.91710 1.25054 0.98962 0.94823 0.94035 1.70010 1.26735 1.07453 1.45959 0.86722 0.82639 0.80161 0.78978 1.21162 1.20088 1.19911 1.23472 0.99482 0.97164 0.98904 1.23029 0.98448 0.98755 0.98792 1.22728 0.93045 1.00521 0.97101 0.92590 0.92694 0.90873 0.88690 0.93035 0.88691 0.92956 0.90121 0.90414 0.92808 0.90178 0.93121 0.91453 0.92908 0.91910 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.94 37.16 0.33 -2.18 16 2 C -0.11 -1.77 2.14 -90.48 -0.19 -1.96 16 3 H 0.09 1.59 7.76 -51.93 -0.40 1.19 16 4 C 0.07 0.89 6.13 37.20 0.23 1.12 16 5 O -0.39 -5.37 10.77 -35.23 -0.38 -5.75 16 6 C 0.07 0.79 6.84 37.21 0.25 1.04 16 7 C -0.14 -2.10 5.41 -26.59 -0.14 -2.24 16 8 C -0.08 -1.45 2.20 -91.59 -0.20 -1.65 16 9 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 10 C 0.47 10.65 5.42 36.00 0.20 10.85 16 11 O -0.51 -12.78 14.02 -18.75 -0.26 -13.04 16 12 O -0.34 -8.35 9.86 -39.25 -0.39 -8.74 16 13 C 0.24 5.91 0.33 -90.96 -0.03 5.88 16 14 C -0.52 -14.45 7.32 -34.44 -0.25 -14.70 16 15 H 0.06 1.86 7.82 -52.49 -0.41 1.45 16 16 C 0.08 2.10 5.37 -17.82 -0.10 2.01 16 17 N -0.86 -24.13 12.79 55.43 0.71 -23.42 16 18 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.15 -3.38 6.91 -25.83 -0.18 -3.56 16 23 C -0.15 -2.99 8.03 -25.83 -0.21 -3.19 16 24 C -0.10 -2.20 7.05 -25.92 -0.18 -2.38 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.54 7.18 -51.93 -0.37 1.17 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 35 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 36 H 0.05 1.12 7.36 -51.93 -0.38 0.74 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.87 8.09 -51.93 -0.42 1.45 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -30.57 322.73 -7.57 -38.14 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.62 Total: 2.64 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.48 Total: -10.98 kcal Atomic # 7 Polarization: -24.13 SS G_CDS: 0.71 Total: -23.42 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -1.03 Total: -27.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.57 -7.57 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.707 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds