Wall clock time and date at job start Mon Mar 30 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.57087 * 2 1 4 4 C 1.53082 * 109.52314 * 120.16151 * 2 1 3 5 5 O 1.42915 * 109.41455 * 177.51767 * 4 2 1 6 6 C 1.42900 * 114.09411 * 298.83988 * 5 4 2 7 7 C 1.53110 * 109.48649 * 61.11073 * 6 5 4 8 8 C 1.53171 * 109.15898 * 302.52242 * 7 6 5 9 9 H 1.08994 * 109.54704 * 296.93566 * 8 7 6 10 10 C 1.50698 * 109.54369 * 176.75741 * 8 7 6 11 11 O 1.20831 * 120.00198 * 275.44041 * 10 8 7 12 12 O 1.34228 * 120.00018 * 95.43965 * 10 8 7 13 13 C 1.45202 * 117.00176 * 182.61929 * 12 10 8 14 14 C 1.50696 * 112.85075 * 295.55900 * 13 12 10 15 15 H 1.07993 * 120.00478 * 114.89651 * 14 13 12 16 16 C 1.37879 * 119.99645 * 294.88916 * 14 13 12 17 17 N 1.31519 * 120.00264 * 4.87525 * 16 14 13 18 18 Si 1.86800 * 120.00071 * 185.14422 * 16 14 13 19 19 H 1.48501 * 109.47340 * 179.72750 * 18 16 14 20 20 H 1.48501 * 109.47303 * 299.72881 * 18 16 14 21 21 H 1.48499 * 109.47046 * 59.72891 * 18 16 14 22 22 C 1.53786 * 113.61273 * 66.75047 * 13 12 10 23 23 C 1.53952 * 87.01661 * 89.22748 * 22 13 12 24 24 C 1.53777 * 87.11444 * 25.36602 * 23 22 13 25 25 H 1.09002 * 109.46944 * 177.34517 * 1 2 3 26 26 H 1.09004 * 109.47351 * 297.34208 * 1 2 3 27 27 H 1.09000 * 109.47562 * 57.34715 * 1 2 3 28 28 H 1.09004 * 109.48476 * 297.49676 * 4 2 1 29 29 H 1.08999 * 109.48139 * 57.53607 * 4 2 1 30 30 H 1.09000 * 109.48315 * 181.13903 * 6 5 4 31 31 H 1.09003 * 109.48324 * 301.16520 * 6 5 4 32 32 H 1.08999 * 109.59666 * 182.57395 * 7 6 5 33 33 H 1.09003 * 109.45042 * 62.38833 * 7 6 5 34 34 H 0.97000 * 120.00241 * 174.94718 * 17 16 14 35 35 H 1.08993 * 113.61279 * 203.75122 * 22 13 12 36 36 H 1.09001 * 113.61171 * 334.65557 * 22 13 12 37 37 H 1.09000 * 113.54397 * 270.80912 * 23 22 13 38 38 H 1.09005 * 113.66271 * 139.93570 * 23 22 13 39 39 H 1.09001 * 113.61530 * 220.08992 * 24 23 22 40 40 H 1.08995 * 113.69776 * 89.19267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7249 1.2475 5 8 3.4695 -0.7743 1.2162 6 6 4.0044 -1.4815 0.0955 7 6 3.5715 -0.7888 -1.1995 8 6 2.0419 -0.7252 -1.2485 9 1 1.6355 -1.7361 -1.2752 10 6 1.6077 0.0254 -2.4810 11 8 1.5487 1.2322 -2.4641 12 8 1.2867 -0.6466 -3.5977 13 6 0.9338 0.1432 -4.7639 14 6 -0.3234 0.9501 -4.5657 15 1 -0.2776 2.0290 -4.5617 16 6 -1.5322 0.3107 -4.3897 17 7 -1.5755 -1.0007 -4.2987 18 14 -3.1094 1.3064 -4.2879 19 1 -4.2630 0.3893 -4.1051 20 1 -3.0320 2.2400 -3.1357 21 1 -3.2872 2.0815 -5.5420 22 6 2.1064 0.9596 -5.3328 23 6 2.4355 -0.2687 -6.2006 24 6 0.9524 -0.6559 -6.0777 25 1 -0.3633 -1.0266 -0.0476 26 1 -0.3634 0.4720 0.9129 27 1 -0.3634 0.5545 -0.8652 28 1 1.7159 -0.1886 2.1388 29 1 1.6432 -1.7393 1.2675 30 1 5.0926 -1.4902 0.1569 31 1 3.6318 -2.5058 0.1006 32 1 3.9402 -1.3525 -2.0564 33 1 3.9792 0.2218 -1.2244 34 1 -2.4145 -1.4458 -4.1018 35 1 1.7933 1.8302 -5.9090 36 1 2.8745 1.1927 -4.5953 37 1 3.1123 -0.9739 -5.7182 38 1 2.7385 -0.0177 -7.2172 39 1 0.7901 -1.7250 -5.9408 40 1 0.3220 -0.2286 -6.8575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:35 Heat of formation + Delta-G solvation = -141.466619 kcal Electronic energy + Delta-G solvation = -22206.488559 eV Core-core repulsion = 18985.931764 eV Total energy + Delta-G solvation = -3220.556795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61758 -40.25393 -38.64619 -35.94927 -35.34612 -34.44892 -33.20146 -28.69185 -28.05463 -26.95680 -26.38971 -24.48933 -23.33138 -22.60584 -20.71411 -20.02654 -19.10646 -17.79755 -17.22747 -16.95391 -16.86387 -16.41982 -16.31323 -15.65565 -15.49055 -15.31143 -14.89793 -14.68607 -13.92034 -13.64069 -13.48401 -13.24257 -13.07900 -13.02564 -12.97700 -12.84164 -12.44937 -12.37386 -12.04833 -11.97694 -11.85430 -11.70294 -11.60924 -11.45072 -11.03643 -10.83758 -10.60788 -10.35688 -10.27727 -8.18220 -6.34966 1.32975 1.33555 1.41725 1.68898 2.21306 2.35541 2.95050 3.11335 3.52824 3.70108 3.78021 3.87803 3.94946 4.06285 4.17570 4.24506 4.34321 4.42871 4.44459 4.58103 4.59728 4.67327 4.72859 4.77324 4.82415 4.88027 5.01217 5.03331 5.06186 5.07557 5.21188 5.29123 5.33677 5.48475 5.63206 5.74295 5.98834 6.22288 6.43274 6.66922 7.30771 7.44234 8.84786 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.007611 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.944203 B = 3677.954404 C = 4655.421068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.068 0.932 4 C 0.076 3.924 5 O -0.395 6.395 6 C 0.067 3.933 7 C -0.140 4.140 8 C -0.080 4.080 9 H 0.101 0.899 10 C 0.462 3.538 11 O -0.542 6.542 12 O -0.349 6.349 13 C 0.211 3.789 14 C -0.541 4.541 15 H 0.041 0.959 16 C 0.038 3.962 17 N -0.885 5.885 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.266 1.266 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.097 4.097 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.020 0.980 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.264 0.736 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -4.180 7.236 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.086 0.914 4 C -0.001 4.001 5 O -0.314 6.314 6 C -0.009 4.009 7 C -0.178 4.178 8 C -0.099 4.099 9 H 0.119 0.881 10 C 0.306 3.694 11 O -0.433 6.433 12 O -0.265 6.265 13 C 0.177 3.823 14 C -0.579 4.579 15 H 0.060 0.940 16 C -0.165 4.165 17 N -0.522 5.522 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.189 4.189 23 C -0.162 4.162 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.039 0.961 28 H 0.133 0.867 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.450 -3.918 7.266 11.813 hybrid contribution -1.539 0.848 -0.455 1.815 sum 6.911 -3.070 6.811 10.177 Atomic orbital electron populations 1.21722 0.94579 1.02131 1.01700 1.21655 0.96321 1.00288 0.94274 0.91351 1.22708 0.80417 1.00488 0.96477 1.87901 1.20806 1.76914 1.45786 1.22722 1.00528 0.94741 0.82893 1.22179 0.91373 1.02831 1.01402 1.21230 0.98667 1.00298 0.89739 0.88124 1.23724 0.73146 0.87007 0.85500 1.90521 1.50522 1.17308 1.84946 1.86397 1.76114 1.43084 1.20858 1.20813 0.91523 0.88833 0.81153 1.21284 0.92242 0.92313 1.52025 0.94030 1.25629 1.01341 0.95777 0.93745 1.70079 1.27339 1.08282 1.46472 0.85916 0.79814 0.79017 0.78777 1.19890 1.20939 1.19066 1.23415 0.98246 0.98033 0.99174 1.22888 0.96251 0.96835 1.00197 1.22676 0.95630 0.99305 0.95840 0.91863 0.89968 0.96061 0.86658 0.91150 0.86016 0.91032 0.89152 0.91848 0.92684 0.90383 0.93726 0.90092 0.89547 0.93057 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.94 71.98 0.64 -4.21 16 2 C -0.11 -3.36 2.14 -10.71 -0.02 -3.39 16 3 H 0.07 2.45 7.76 -2.38 -0.02 2.44 16 4 C 0.08 1.77 6.13 72.01 0.44 2.21 16 5 O -0.40 -9.79 10.77 -148.98 -1.60 -11.39 16 6 C 0.07 1.41 6.84 72.02 0.49 1.90 16 7 C -0.14 -3.84 5.41 30.69 0.17 -3.67 16 8 C -0.08 -2.76 2.20 -11.42 -0.03 -2.78 16 9 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 10 C 0.46 21.47 5.42 71.24 0.39 21.86 16 11 O -0.54 -28.50 14.02 21.95 0.31 -28.19 16 12 O -0.35 -17.69 9.86 -51.40 -0.51 -18.20 16 13 C 0.21 10.83 0.33 -11.01 0.00 10.83 16 14 C -0.54 -31.05 7.32 25.60 0.19 -30.86 16 15 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 16 C 0.04 2.15 5.37 84.65 0.45 2.61 16 17 N -0.88 -50.17 12.79 21.45 0.27 -49.90 16 18 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.15 -6.72 6.91 31.18 0.22 -6.51 16 23 C -0.12 -4.66 8.03 31.18 0.25 -4.41 16 24 C -0.10 -4.42 7.05 31.12 0.22 -4.20 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.02 0.91 7.18 -2.39 -0.02 0.89 16 28 H 0.12 2.24 8.14 -2.38 -0.02 2.23 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 35 H 0.08 3.44 8.09 -2.39 -0.02 3.42 16 36 H 0.04 2.00 7.36 -2.39 -0.02 1.98 16 37 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 39 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.08 3.49 8.09 -2.39 -0.02 3.47 16 Total: -1.00 -68.32 322.73 4.91 -63.42 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 1.00 Total: 18.31 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 3.41 Total: -20.64 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.27 Total: -49.90 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -1.80 Total: -57.78 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.32 4.91 -63.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.047 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds