Wall clock time and date at job start Mon Mar 30 2020 07:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.51775 * 2 1 4 4 C 1.53091 * 109.52123 * 120.12612 * 2 1 3 5 5 O 1.42897 * 109.41710 * 62.36402 * 4 2 1 6 6 C 1.42897 * 114.09968 * 61.15638 * 5 4 2 7 7 C 1.53092 * 109.41407 * 298.84177 * 6 5 4 8 8 C 1.53175 * 109.57692 * 239.84243 * 2 1 3 9 9 H 1.08994 * 109.54534 * 177.17483 * 8 2 1 10 10 C 1.50700 * 109.54170 * 56.90949 * 8 2 1 11 11 O 1.20823 * 120.00365 * 0.02562 * 10 8 2 12 12 O 1.34225 * 120.00044 * 180.02562 * 10 8 2 13 13 C 1.45203 * 117.00208 * 177.70570 * 12 10 8 14 14 C 1.50697 * 112.84672 * 65.19099 * 13 12 10 15 15 H 1.08000 * 120.00218 * 242.61044 * 14 13 12 16 16 C 1.37878 * 120.00456 * 62.61128 * 14 13 12 17 17 N 1.31522 * 119.99602 * 353.75313 * 16 14 13 18 18 Si 1.86796 * 120.00280 * 173.75648 * 16 14 13 19 19 H 1.48492 * 109.47344 * 59.99756 * 18 16 14 20 20 H 1.48499 * 109.47185 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47114 * 299.99521 * 18 16 14 22 22 C 1.53780 * 113.61625 * 293.99159 * 13 12 10 23 23 C 1.53952 * 87.02178 * 220.04498 * 22 13 12 24 24 C 1.53781 * 87.11117 * 25.36370 * 23 22 13 25 25 H 1.08996 * 109.47575 * 300.00059 * 1 2 3 26 26 H 1.09006 * 109.47396 * 60.00243 * 1 2 3 27 27 H 1.09008 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47779 * 182.34556 * 4 2 1 29 29 H 1.09006 * 109.48136 * 302.37496 * 4 2 1 30 30 H 1.09000 * 109.48175 * 58.82704 * 6 5 4 31 31 H 1.09006 * 109.48085 * 178.84927 * 6 5 4 32 32 H 1.09008 * 109.52240 * 177.51259 * 7 6 5 33 33 H 1.08993 * 109.52636 * 297.63975 * 7 6 5 34 34 H 0.97003 * 119.99669 * 185.01981 * 17 16 14 35 35 H 1.08999 * 113.61410 * 334.56934 * 22 13 12 36 36 H 1.09000 * 113.61062 * 105.46939 * 22 13 12 37 37 H 1.08994 * 113.53931 * 270.81468 * 23 22 13 38 38 H 1.09008 * 113.74367 * 139.94010 * 23 22 13 39 39 H 1.08995 * 113.61974 * 220.08681 * 24 23 22 40 40 H 1.09001 * 113.61341 * 89.18348 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0415 -0.7242 1.2480 5 8 1.6111 -2.0864 1.2167 6 6 2.0996 -2.8271 0.0966 7 6 1.5903 -2.1875 -1.1977 8 6 2.0432 -0.7250 -1.2479 9 1 3.1320 -0.6812 -1.2731 10 6 1.4816 -0.0654 -2.4809 11 8 0.7463 0.8875 -2.3747 12 8 1.7981 -0.5363 -3.6973 13 6 1.1803 0.1159 -4.8381 14 6 1.6168 1.5492 -4.9997 15 1 0.8922 2.3463 -4.9231 16 6 2.9413 1.8431 -5.2454 17 7 3.8434 0.8863 -5.2169 18 14 3.4546 3.5999 -5.6186 19 1 3.1002 4.4735 -4.4713 20 1 4.9215 3.6496 -5.8447 21 1 2.7503 4.0731 -6.8372 22 6 -0.3440 -0.0753 -4.9061 23 6 -0.1742 -0.2448 -6.4268 24 6 1.2645 -0.7038 -6.1365 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1308 -0.6876 1.2686 29 1 1.6444 -0.2378 2.1390 30 1 3.1895 -2.8180 0.1022 31 1 1.7443 -3.8558 0.1581 32 1 1.9977 -2.7245 -2.0543 33 1 0.5016 -2.2336 -1.2230 34 1 4.7835 1.1031 -5.3173 35 1 -0.6939 -0.9765 -4.4026 36 1 -0.9085 0.8139 -4.6253 37 1 -0.2302 0.6936 -6.9783 38 1 -0.8036 -1.0254 -6.8544 39 1 1.9967 -0.3214 -6.8476 40 1 1.3552 -1.7772 -5.9701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:39 Heat of formation + Delta-G solvation = -117.900327 kcal Electronic energy + Delta-G solvation = -22217.756971 eV Core-core repulsion = 18998.222088 eV Total energy + Delta-G solvation = -3219.534884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11758 -38.75187 -37.03875 -34.34893 -33.71007 -32.30715 -31.63013 -27.14531 -26.22618 -25.52132 -24.57164 -22.99278 -22.89525 -20.48044 -18.63697 -18.53129 -16.98529 -16.44711 -15.82307 -15.41255 -15.12450 -14.95850 -14.73543 -14.29933 -13.96637 -13.69876 -13.29401 -13.01477 -12.52420 -12.25034 -11.75646 -11.61243 -11.43159 -11.16810 -11.11879 -11.02105 -10.94583 -10.82250 -10.33059 -10.28276 -10.26540 -10.06782 -9.85469 -9.82195 -9.61643 -9.03442 -8.74121 -8.53564 -8.43733 -6.12451 -4.24103 3.25978 3.30146 3.34395 3.50426 3.90873 4.06461 4.33609 4.84152 5.00279 5.09926 5.13381 5.27224 5.32187 5.51628 5.64612 5.72055 5.73834 5.78412 5.84809 5.90428 5.93762 5.99550 6.11090 6.18021 6.32275 6.38228 6.46318 6.53484 6.59570 6.63072 6.84826 6.90284 7.09331 7.27992 7.28514 7.54691 7.78025 7.98447 8.38355 8.79611 9.26361 9.46454 10.91837 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.021512 B = 0.006775 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.285088 B = 4131.664565 C = 4632.311865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 H 0.084 0.916 4 C 0.067 3.933 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.145 4.145 8 C -0.083 4.083 9 H 0.097 0.903 10 C 0.469 3.531 11 O -0.506 6.506 12 O -0.342 6.342 13 C 0.242 3.758 14 C -0.514 4.514 15 H 0.067 0.933 16 C 0.075 3.925 17 N -0.862 5.862 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.158 4.158 23 C -0.132 4.132 24 C -0.109 4.109 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -6.059 7.620 10.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.127 4.127 3 H 0.102 0.898 4 C -0.010 4.010 5 O -0.302 6.302 6 C -0.013 4.013 7 C -0.183 4.183 8 C -0.103 4.103 9 H 0.115 0.885 10 C 0.311 3.689 11 O -0.396 6.396 12 O -0.258 6.258 13 C 0.208 3.792 14 C -0.551 4.551 15 H 0.085 0.915 16 C -0.130 4.130 17 N -0.498 5.498 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.196 4.196 23 C -0.170 4.170 24 C -0.147 4.147 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.603 -5.914 7.635 10.002 hybrid contribution 0.673 1.214 -0.413 1.448 sum -1.930 -4.700 7.222 8.830 Atomic orbital electron populations 1.22101 0.93919 1.01925 1.03481 1.21560 0.98135 0.99863 0.93106 0.89768 1.22650 0.98157 0.82213 0.97967 1.87881 1.74301 1.22563 1.45439 1.22582 0.98049 0.95386 0.85329 1.22154 1.02519 0.94531 0.99086 1.21050 1.01785 0.95603 0.91822 0.88499 1.22652 0.78726 0.82129 0.85367 1.90448 1.35219 1.26569 1.87345 1.86471 1.66181 1.58734 1.14433 1.21129 0.85987 0.91998 0.80051 1.20907 0.94167 0.90380 1.49653 0.91526 1.25069 0.96683 0.97302 0.93980 1.70033 1.01067 1.31722 1.47019 0.86650 0.77366 0.84853 0.79218 1.20064 1.21135 1.19851 1.23542 1.00067 1.00123 0.95853 1.22572 0.97529 1.00564 0.96326 1.22904 0.95571 0.97962 0.98223 0.93608 0.89037 0.92960 0.93293 0.88831 0.93062 0.88826 0.89610 0.90617 0.92739 0.92341 0.91876 0.90275 0.93026 0.90807 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.43 37.16 0.31 -2.22 16 2 C -0.11 -1.69 2.44 -90.48 -0.22 -1.91 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 4 C 0.07 0.87 6.25 37.20 0.23 1.10 16 5 O -0.38 -5.30 10.19 -35.23 -0.36 -5.66 16 6 C 0.06 0.78 6.84 37.20 0.25 1.04 16 7 C -0.15 -2.15 4.99 -26.59 -0.13 -2.28 16 8 C -0.08 -1.46 2.50 -91.59 -0.23 -1.69 16 9 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 10 C 0.47 10.57 6.53 36.01 0.23 10.81 16 11 O -0.51 -12.41 11.92 -18.75 -0.22 -12.64 16 12 O -0.34 -8.49 9.70 -39.25 -0.38 -8.87 16 13 C 0.24 6.05 0.47 -90.96 -0.04 6.00 16 14 C -0.51 -14.12 7.08 -34.44 -0.24 -14.37 16 15 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 16 C 0.08 2.06 5.29 -17.82 -0.09 1.97 16 17 N -0.86 -24.07 12.78 55.43 0.71 -23.36 16 18 Si 0.89 21.24 29.55 -169.99 -5.02 16.21 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.16 -3.48 6.56 -25.83 -0.17 -3.65 16 23 C -0.13 -2.66 7.81 -25.83 -0.20 -2.86 16 24 C -0.11 -2.48 7.28 -25.92 -0.19 -2.67 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.74 5.28 -51.93 -0.27 1.47 16 27 H 0.05 0.81 6.15 -51.92 -0.32 0.49 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.08 1.15 6.63 -51.93 -0.34 0.81 16 34 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.43 8.09 -51.93 -0.42 1.01 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.07 1.80 7.97 -51.93 -0.41 1.39 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -30.01 315.88 -7.40 -37.41 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.39 Total: 2.87 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.49 Total: -10.72 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.71 Total: -23.36 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.96 Total: -27.17 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.01 -7.40 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.491 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds