Wall clock time and date at job start Mon Mar 30 2020 07:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.51775 * 2 1 4 4 C 1.53091 * 109.52123 * 120.12612 * 2 1 3 5 5 O 1.42897 * 109.41710 * 62.36402 * 4 2 1 6 6 C 1.42897 * 114.09968 * 61.15638 * 5 4 2 7 7 C 1.53092 * 109.41407 * 298.84177 * 6 5 4 8 8 C 1.53175 * 109.57692 * 239.84243 * 2 1 3 9 9 H 1.08994 * 109.54534 * 177.17483 * 8 2 1 10 10 C 1.50700 * 109.54170 * 56.90949 * 8 2 1 11 11 O 1.20823 * 120.00365 * 0.02562 * 10 8 2 12 12 O 1.34225 * 120.00044 * 180.02562 * 10 8 2 13 13 C 1.45203 * 117.00208 * 177.70570 * 12 10 8 14 14 C 1.50697 * 112.84672 * 65.19099 * 13 12 10 15 15 H 1.08000 * 120.00218 * 242.61044 * 14 13 12 16 16 C 1.37878 * 120.00456 * 62.61128 * 14 13 12 17 17 N 1.31522 * 119.99602 * 353.75313 * 16 14 13 18 18 Si 1.86796 * 120.00280 * 173.75648 * 16 14 13 19 19 H 1.48492 * 109.47344 * 59.99756 * 18 16 14 20 20 H 1.48499 * 109.47185 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47114 * 299.99521 * 18 16 14 22 22 C 1.53780 * 113.61625 * 293.99159 * 13 12 10 23 23 C 1.53952 * 87.02178 * 220.04498 * 22 13 12 24 24 C 1.53781 * 87.11117 * 25.36370 * 23 22 13 25 25 H 1.08996 * 109.47575 * 300.00059 * 1 2 3 26 26 H 1.09006 * 109.47396 * 60.00243 * 1 2 3 27 27 H 1.09008 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47779 * 182.34556 * 4 2 1 29 29 H 1.09006 * 109.48136 * 302.37496 * 4 2 1 30 30 H 1.09000 * 109.48175 * 58.82704 * 6 5 4 31 31 H 1.09006 * 109.48085 * 178.84927 * 6 5 4 32 32 H 1.09008 * 109.52240 * 177.51259 * 7 6 5 33 33 H 1.08993 * 109.52636 * 297.63975 * 7 6 5 34 34 H 0.97003 * 119.99669 * 185.01981 * 17 16 14 35 35 H 1.08999 * 113.61410 * 334.56934 * 22 13 12 36 36 H 1.09000 * 113.61062 * 105.46939 * 22 13 12 37 37 H 1.08994 * 113.53931 * 270.81468 * 23 22 13 38 38 H 1.09008 * 113.74367 * 139.94010 * 23 22 13 39 39 H 1.08995 * 113.61974 * 220.08681 * 24 23 22 40 40 H 1.09001 * 113.61341 * 89.18348 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0415 -0.7242 1.2480 5 8 1.6111 -2.0864 1.2167 6 6 2.0996 -2.8271 0.0966 7 6 1.5903 -2.1875 -1.1977 8 6 2.0432 -0.7250 -1.2479 9 1 3.1320 -0.6812 -1.2731 10 6 1.4816 -0.0654 -2.4809 11 8 0.7463 0.8875 -2.3747 12 8 1.7981 -0.5363 -3.6973 13 6 1.1803 0.1159 -4.8381 14 6 1.6168 1.5492 -4.9997 15 1 0.8922 2.3463 -4.9231 16 6 2.9413 1.8431 -5.2454 17 7 3.8434 0.8863 -5.2169 18 14 3.4546 3.5999 -5.6186 19 1 3.1002 4.4735 -4.4713 20 1 4.9215 3.6496 -5.8447 21 1 2.7503 4.0731 -6.8372 22 6 -0.3440 -0.0753 -4.9061 23 6 -0.1742 -0.2448 -6.4268 24 6 1.2645 -0.7038 -6.1365 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1308 -0.6876 1.2686 29 1 1.6444 -0.2378 2.1390 30 1 3.1895 -2.8180 0.1022 31 1 1.7443 -3.8558 0.1581 32 1 1.9977 -2.7245 -2.0543 33 1 0.5016 -2.2336 -1.2230 34 1 4.7835 1.1031 -5.3173 35 1 -0.6939 -0.9765 -4.4026 36 1 -0.9085 0.8139 -4.6253 37 1 -0.2302 0.6936 -6.9783 38 1 -0.8036 -1.0254 -6.8544 39 1 1.9967 -0.3214 -6.8476 40 1 1.3552 -1.7772 -5.9701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:38 Heat of formation + Delta-G solvation = -134.809392 kcal Electronic energy + Delta-G solvation = -22218.490203 eV Core-core repulsion = 18998.222088 eV Total energy + Delta-G solvation = -3220.268116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62550 -40.26185 -38.71475 -36.10882 -35.08543 -34.38444 -32.79424 -28.58519 -28.02736 -26.83998 -26.37654 -24.75523 -24.04091 -22.04753 -20.46669 -19.95140 -18.81123 -17.81177 -17.16353 -17.04888 -16.76163 -16.63983 -16.21814 -15.85857 -15.59406 -15.07541 -14.81626 -14.49794 -14.06320 -13.72991 -13.52226 -13.10629 -12.97207 -12.94540 -12.79453 -12.54513 -12.33634 -12.28907 -12.13426 -11.98727 -11.69195 -11.64092 -11.50066 -11.32197 -10.99072 -10.79047 -10.63638 -10.42641 -10.16180 -8.20502 -6.37917 1.34538 1.34706 1.43002 1.75986 2.31430 2.36924 2.99089 3.10216 3.58241 3.76796 3.88035 3.98238 3.99752 4.05723 4.19234 4.25007 4.34471 4.47471 4.57255 4.62145 4.71250 4.75526 4.78195 4.83506 4.84850 4.91282 4.92868 5.10707 5.13640 5.18804 5.30257 5.35594 5.41156 5.49190 5.63034 5.76324 6.06606 6.26453 6.51376 6.66762 7.30216 7.48983 8.82980 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.021512 B = 0.006775 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.285088 B = 4131.664565 C = 4632.311865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 H 0.070 0.930 4 C 0.073 3.927 5 O -0.390 6.390 6 C 0.067 3.933 7 C -0.139 4.139 8 C -0.080 4.080 9 H 0.098 0.902 10 C 0.457 3.543 11 O -0.533 6.533 12 O -0.357 6.357 13 C 0.218 3.782 14 C -0.531 4.531 15 H 0.046 0.954 16 C 0.035 3.965 17 N -0.884 5.884 18 Si 0.946 3.054 19 H -0.282 1.282 20 H -0.276 1.276 21 H -0.265 1.265 22 C -0.151 4.151 23 C -0.113 4.113 24 C -0.107 4.107 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.264 0.736 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 -7.133 8.531 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 H 0.089 0.911 4 C -0.004 4.004 5 O -0.309 6.309 6 C -0.010 4.010 7 C -0.177 4.177 8 C -0.100 4.100 9 H 0.116 0.884 10 C 0.301 3.699 11 O -0.424 6.424 12 O -0.273 6.273 13 C 0.184 3.816 14 C -0.568 4.568 15 H 0.064 0.936 16 C -0.169 4.169 17 N -0.521 5.521 18 Si 0.771 3.229 19 H -0.208 1.208 20 H -0.201 1.201 21 H -0.189 1.189 22 C -0.189 4.189 23 C -0.150 4.150 24 C -0.145 4.145 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.529 -6.995 8.543 11.328 hybrid contribution 0.615 1.560 -0.674 1.807 sum -1.914 -5.435 7.869 9.753 Atomic orbital electron populations 1.21983 0.94295 1.01883 1.02606 1.21597 0.97805 0.99447 0.93754 0.91143 1.22688 0.99100 0.81725 0.96864 1.87885 1.74635 1.22714 1.45671 1.22698 0.98902 0.96070 0.83317 1.22145 1.02105 0.92585 1.00830 1.21170 1.01552 0.97303 0.89933 0.88367 1.23683 0.78264 0.81947 0.86001 1.90441 1.36441 1.27841 1.87694 1.86447 1.66621 1.58883 1.15340 1.21327 0.87843 0.91402 0.81047 1.21027 0.94174 0.91458 1.50148 0.93604 1.25688 0.96662 1.00692 0.93842 1.70110 1.01167 1.33121 1.47714 0.85811 0.77505 0.80677 0.78896 1.20813 1.20054 1.18941 1.23460 0.97913 0.99924 0.97596 1.22496 0.96147 1.01467 0.94931 1.22876 0.96680 0.98365 0.96604 0.91782 0.92488 0.92497 0.91762 0.86768 0.91666 0.86278 0.89784 0.91292 0.92656 0.91024 0.93526 0.90758 0.89071 0.93133 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 8.43 71.98 0.61 -4.15 16 2 C -0.11 -3.27 2.44 -10.71 -0.03 -3.29 16 3 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.07 1.69 6.25 72.01 0.45 2.14 16 5 O -0.39 -9.56 10.19 -148.98 -1.52 -11.07 16 6 C 0.07 1.45 6.84 72.01 0.49 1.94 16 7 C -0.14 -3.91 4.99 30.68 0.15 -3.76 16 8 C -0.08 -2.78 2.50 -11.42 -0.03 -2.81 16 9 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 10 C 0.46 21.02 6.53 71.24 0.46 21.48 16 11 O -0.53 -27.07 11.92 21.97 0.26 -26.81 16 12 O -0.36 -17.98 9.70 -51.37 -0.50 -18.48 16 13 C 0.22 11.04 0.47 -11.01 -0.01 11.04 16 14 C -0.53 -29.93 7.08 25.60 0.18 -29.75 16 15 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 16 C 0.03 1.92 5.29 84.65 0.45 2.37 16 17 N -0.88 -50.03 12.78 21.45 0.27 -49.76 16 18 Si 0.95 44.13 29.55 68.60 2.03 46.15 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 22 C -0.15 -6.65 6.56 31.18 0.20 -6.45 16 23 C -0.11 -4.41 7.81 31.18 0.24 -4.16 16 24 C -0.11 -4.87 7.28 31.12 0.23 -4.64 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 2.22 5.28 -2.38 -0.01 2.20 16 27 H 0.06 1.71 6.15 -2.38 -0.01 1.70 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.12 2.02 8.14 -2.38 -0.02 2.01 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.07 2.02 6.63 -2.39 -0.02 2.01 16 34 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 35 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.05 2.16 8.09 -2.39 -0.02 2.14 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 39 H 0.05 2.49 7.97 -2.39 -0.02 2.47 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -65.69 315.88 4.97 -60.72 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.01 Total: 19.31 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 3.41 Total: -20.06 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.27 Total: -49.76 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -1.75 Total: -56.37 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.69 4.97 -60.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.088 kcal (2) G-P(sol) polarization free energy of solvation -65.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds