Wall clock time and date at job start Mon Mar 30 2020 07:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99872 * 2 1 4 4 C 1.52993 * 112.85214 * 304.35146 * 3 2 1 5 5 C 1.50701 * 109.47300 * 289.94768 * 4 3 2 6 6 O 1.20828 * 119.99859 * 5.05242 * 5 4 3 7 7 O 1.34230 * 120.00082 * 185.05263 * 5 4 3 8 8 C 1.45201 * 116.99753 * 184.47273 * 7 5 4 9 9 C 1.50701 * 112.85160 * 64.03385 * 8 7 5 10 10 H 1.07999 * 119.99581 * 234.80182 * 9 8 7 11 11 C 1.37872 * 119.99857 * 54.79750 * 9 8 7 12 12 N 1.31515 * 119.99538 * 172.71892 * 11 9 8 13 13 Si 1.86792 * 120.00382 * 352.72099 * 11 9 8 14 14 H 1.48493 * 109.47404 * 267.41248 * 13 11 9 15 15 H 1.48501 * 109.47105 * 27.41249 * 13 11 9 16 16 H 1.48501 * 109.47296 * 147.40936 * 13 11 9 17 17 C 1.53784 * 113.61039 * 195.22953 * 8 7 5 18 18 C 1.53957 * 87.02159 * 89.23211 * 17 8 7 19 19 C 1.53782 * 87.11250 * 25.36003 * 18 17 8 20 20 C 1.53785 * 113.69118 * 75.62490 * 3 2 1 21 21 C 1.53776 * 87.08134 * 89.12269 * 20 3 2 22 22 C 1.53780 * 87.08318 * 25.43384 * 21 20 3 23 23 H 1.08998 * 109.47479 * 66.38382 * 1 2 3 24 24 H 1.08996 * 109.47472 * 186.38831 * 1 2 3 25 25 H 1.09001 * 109.46829 * 306.38970 * 1 2 3 26 26 H 1.09001 * 109.47107 * 169.94591 * 4 3 2 27 27 H 1.08996 * 109.47303 * 49.94681 * 4 3 2 28 28 H 0.97004 * 119.99880 * 179.97438 * 12 11 9 29 29 H 1.09002 * 113.61143 * 203.74391 * 17 8 7 30 30 H 1.08997 * 113.61981 * 334.65183 * 17 8 7 31 31 H 1.09007 * 113.53330 * 270.81180 * 18 17 8 32 32 H 1.08995 * 113.74791 * 139.94505 * 18 17 8 33 33 H 1.09001 * 113.61616 * 220.09490 * 19 18 17 34 34 H 1.08995 * 113.68932 * 89.19980 * 19 18 17 35 35 H 1.09001 * 113.61096 * 203.67061 * 20 3 2 36 36 H 1.08996 * 113.61181 * 334.57181 * 20 3 2 37 37 H 1.08996 * 113.62046 * 270.87966 * 21 20 3 38 38 H 1.09007 * 113.61419 * 139.98225 * 21 20 3 39 39 H 1.09005 * 113.61468 * 220.01535 * 22 21 20 40 40 H 1.09002 * 113.61457 * 89.11327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5251 2.1718 -1.1640 5 6 2.0944 1.6430 -2.4552 6 8 2.7389 0.6209 -2.4575 7 8 1.8855 2.3073 -3.6027 8 6 2.3771 1.6892 -4.8211 9 6 1.6944 0.3818 -5.1307 10 1 2.2821 -0.5115 -5.2823 11 6 0.3197 0.3263 -5.2204 12 7 -0.2685 -0.7764 -5.6299 13 14 -0.7073 1.8172 -4.7603 14 1 -1.0999 1.7259 -3.3311 15 1 0.0882 3.0523 -4.9771 16 1 -1.9266 1.8588 -5.6069 17 6 2.4374 2.6515 -6.0191 18 6 3.8645 3.0040 -5.5614 19 6 3.9113 1.6167 -4.8995 20 6 1.9421 2.0122 1.3642 21 6 3.2936 1.3525 1.6851 22 6 3.5388 1.2992 0.1679 23 1 -0.3634 0.4117 -0.9416 24 1 -0.3634 -1.0212 0.1143 25 1 -0.3633 0.6097 0.8273 26 1 1.8564 3.1995 -1.0147 27 1 0.4364 2.1439 -1.2086 28 1 -1.2357 -0.8156 -5.6926 29 1 2.4006 2.1486 -6.9854 30 1 1.7367 3.4833 -5.9467 31 1 3.9021 3.8288 -4.8497 32 1 4.5724 3.1204 -6.3820 33 1 4.3987 1.6143 -3.9245 34 1 4.2781 0.8295 -5.5580 35 1 1.9920 3.0989 1.2958 36 1 1.1252 1.6638 1.9960 37 1 3.2010 0.3697 2.1473 38 1 3.9841 2.0077 2.2163 39 1 4.0110 0.3752 -0.1659 40 1 4.0252 2.1910 -0.2274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:13 Heat of formation + Delta-G solvation = -76.125390 kcal Electronic energy + Delta-G solvation = -22346.381258 eV Core-core repulsion = 19128.657871 eV Total energy + Delta-G solvation = -3217.723386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30015 -39.22836 -36.97068 -35.42757 -34.32591 -32.36300 -30.27104 -26.93429 -26.82394 -25.45210 -24.87266 -23.59123 -22.19237 -20.48999 -19.24709 -18.25449 -17.23995 -16.37666 -15.81910 -15.75468 -15.38769 -14.94146 -14.75531 -14.35448 -14.12676 -14.07518 -13.40730 -12.99586 -12.60800 -12.29911 -12.13330 -11.93739 -11.53559 -11.46913 -11.36046 -11.16715 -11.02964 -10.81555 -10.70813 -10.31643 -10.29192 -10.00629 -9.97000 -9.84571 -9.41628 -9.20042 -8.87815 -8.58039 -8.51378 -6.15664 -4.19983 3.17874 3.27509 3.41003 3.50825 3.64689 3.92079 4.41634 4.62213 4.67201 4.84955 4.92548 5.15338 5.31497 5.45115 5.49336 5.51314 5.56043 5.61774 5.66829 5.70974 5.72137 5.77260 5.88256 5.95606 6.01702 6.22491 6.29140 6.30606 6.32736 6.36989 6.66282 6.67235 6.81544 7.01653 7.28100 7.48154 7.48607 7.80962 8.42849 8.88023 9.00582 9.46597 10.95224 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.008270 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.461202 B = 3385.036574 C = 4101.952998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.109 3.891 4 C -0.143 4.143 5 C 0.457 3.543 6 O -0.472 6.472 7 O -0.364 6.364 8 C 0.195 3.805 9 C -0.510 4.510 10 H 0.084 0.916 11 C 0.080 3.920 12 N -0.885 5.885 13 Si 0.879 3.121 14 H -0.285 1.285 15 H -0.243 1.243 16 H -0.299 1.299 17 C -0.122 4.122 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.163 4.163 21 C -0.135 4.135 22 C -0.115 4.115 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.265 0.735 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 8.681 11.352 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.262 6.262 3 C 0.068 3.932 4 C -0.182 4.182 5 C 0.297 3.703 6 O -0.356 6.356 7 O -0.283 6.283 8 C 0.161 3.839 9 C -0.547 4.547 10 H 0.102 0.898 11 C -0.125 4.125 12 N -0.522 5.522 13 Si 0.709 3.291 14 H -0.212 1.212 15 H -0.167 1.167 16 H -0.227 1.227 17 C -0.160 4.160 18 C -0.185 4.185 19 C -0.177 4.177 20 C -0.200 4.200 21 C -0.172 4.172 22 C -0.153 4.153 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.665 8.098 11.257 14.343 hybrid contribution -1.115 0.770 0.178 1.367 sum 2.550 8.867 11.436 14.694 Atomic orbital electron populations 1.22766 0.81658 1.02682 0.99974 1.88013 1.19077 1.24690 1.94399 1.22243 0.95604 0.83842 0.91482 1.22015 1.03144 1.01299 0.91698 1.22700 0.79126 0.83190 0.85265 1.90625 1.35872 1.22270 1.86869 1.86374 1.73433 1.52196 1.16306 1.21157 0.91539 0.92163 0.79042 1.21071 0.92107 0.93885 1.47633 0.89839 1.25018 0.98043 0.96035 0.93371 1.69944 1.10101 1.27341 1.44785 0.86850 0.79179 0.85092 0.78015 1.21187 1.16745 1.22711 1.23300 0.95283 0.98800 0.98619 1.22963 0.97863 0.97794 0.99902 1.23264 0.98155 0.96075 1.00173 1.23571 0.98885 1.00317 0.97263 1.22777 0.96576 1.01043 0.96847 1.22913 0.93513 1.03641 0.95210 0.93750 0.89485 0.94292 0.87836 0.88487 0.92563 0.88758 0.92076 0.91260 0.92433 0.92342 0.89744 0.89305 0.91007 0.89837 0.91485 0.89539 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.34 101.05 1.04 1.45 16 2 O -0.34 -6.28 10.17 -42.20 -0.43 -6.71 16 3 C 0.11 1.71 0.40 -89.81 -0.04 1.67 16 4 C -0.14 -2.43 5.11 -27.89 -0.14 -2.58 16 5 C 0.46 10.08 6.97 36.01 0.25 10.33 16 6 O -0.47 -11.66 12.84 -22.34 -0.29 -11.95 16 7 O -0.36 -8.49 6.95 -39.26 -0.27 -8.76 16 8 C 0.20 4.71 0.10 -90.95 -0.01 4.70 16 9 C -0.51 -14.64 8.05 -34.44 -0.28 -14.91 16 10 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16 11 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 12 N -0.88 -27.24 13.96 55.43 0.77 -26.46 16 13 Si 0.88 22.16 25.68 -169.99 -4.37 17.80 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.24 -5.79 4.92 56.52 0.28 -5.51 16 16 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 17 C -0.12 -2.58 6.58 -25.82 -0.17 -2.75 16 18 C -0.15 -2.69 8.03 -25.83 -0.21 -2.90 16 19 C -0.14 -2.96 6.86 -25.91 -0.18 -3.14 16 20 C -0.16 -1.90 7.22 -25.92 -0.19 -2.09 16 21 C -0.14 -1.57 8.02 -25.92 -0.21 -1.78 16 22 C -0.12 -1.68 6.20 -25.92 -0.16 -1.85 16 23 H 0.04 0.79 6.78 -51.93 -0.35 0.44 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.04 0.49 7.22 -51.93 -0.37 0.11 16 26 H 0.10 1.41 7.97 -51.93 -0.41 0.99 16 27 H 0.10 1.64 6.47 -51.93 -0.34 1.31 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.09 1.97 8.09 -51.93 -0.42 1.55 16 30 H 0.06 1.26 6.81 -51.93 -0.35 0.90 16 31 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.24 7.19 -51.93 -0.37 0.87 16 34 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 35 H 0.09 0.87 7.98 -51.93 -0.41 0.46 16 36 H 0.07 0.79 7.39 -51.93 -0.38 0.41 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.45 8.05 -51.93 -0.42 1.03 16 40 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 315.30 15.07 4.75 4.75 Total: -1.00 -32.91 315.30 -6.68 -39.59 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.48 Total: 3.36 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.38 Total: -11.61 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.77 Total: -26.46 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.99 Total: -27.42 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.37 Total: 17.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.91 -6.68 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.531 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds