Wall clock time and date at job start Mon Mar 30 2020 07:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99872 * 2 1 4 4 C 1.52993 * 112.85214 * 304.35146 * 3 2 1 5 5 C 1.50701 * 109.47300 * 289.94768 * 4 3 2 6 6 O 1.20828 * 119.99859 * 5.05242 * 5 4 3 7 7 O 1.34230 * 120.00082 * 185.05263 * 5 4 3 8 8 C 1.45201 * 116.99753 * 184.47273 * 7 5 4 9 9 C 1.50701 * 112.85160 * 64.03385 * 8 7 5 10 10 H 1.07999 * 119.99581 * 234.80182 * 9 8 7 11 11 C 1.37872 * 119.99857 * 54.79750 * 9 8 7 12 12 N 1.31515 * 119.99538 * 172.71892 * 11 9 8 13 13 Si 1.86792 * 120.00382 * 352.72099 * 11 9 8 14 14 H 1.48493 * 109.47404 * 267.41248 * 13 11 9 15 15 H 1.48501 * 109.47105 * 27.41249 * 13 11 9 16 16 H 1.48501 * 109.47296 * 147.40936 * 13 11 9 17 17 C 1.53784 * 113.61039 * 195.22953 * 8 7 5 18 18 C 1.53957 * 87.02159 * 89.23211 * 17 8 7 19 19 C 1.53782 * 87.11250 * 25.36003 * 18 17 8 20 20 C 1.53785 * 113.69118 * 75.62490 * 3 2 1 21 21 C 1.53776 * 87.08134 * 89.12269 * 20 3 2 22 22 C 1.53780 * 87.08318 * 25.43384 * 21 20 3 23 23 H 1.08998 * 109.47479 * 66.38382 * 1 2 3 24 24 H 1.08996 * 109.47472 * 186.38831 * 1 2 3 25 25 H 1.09001 * 109.46829 * 306.38970 * 1 2 3 26 26 H 1.09001 * 109.47107 * 169.94591 * 4 3 2 27 27 H 1.08996 * 109.47303 * 49.94681 * 4 3 2 28 28 H 0.97004 * 119.99880 * 179.97438 * 12 11 9 29 29 H 1.09002 * 113.61143 * 203.74391 * 17 8 7 30 30 H 1.08997 * 113.61981 * 334.65183 * 17 8 7 31 31 H 1.09007 * 113.53330 * 270.81180 * 18 17 8 32 32 H 1.08995 * 113.74791 * 139.94505 * 18 17 8 33 33 H 1.09001 * 113.61616 * 220.09490 * 19 18 17 34 34 H 1.08995 * 113.68932 * 89.19980 * 19 18 17 35 35 H 1.09001 * 113.61096 * 203.67061 * 20 3 2 36 36 H 1.08996 * 113.61181 * 334.57181 * 20 3 2 37 37 H 1.08996 * 113.62046 * 270.87966 * 21 20 3 38 38 H 1.09007 * 113.61419 * 139.98225 * 21 20 3 39 39 H 1.09005 * 113.61468 * 220.01535 * 22 21 20 40 40 H 1.09002 * 113.61457 * 89.11327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5251 2.1718 -1.1640 5 6 2.0944 1.6430 -2.4552 6 8 2.7389 0.6209 -2.4575 7 8 1.8855 2.3073 -3.6027 8 6 2.3771 1.6892 -4.8211 9 6 1.6944 0.3818 -5.1307 10 1 2.2821 -0.5115 -5.2823 11 6 0.3197 0.3263 -5.2204 12 7 -0.2685 -0.7764 -5.6299 13 14 -0.7073 1.8172 -4.7603 14 1 -1.0999 1.7259 -3.3311 15 1 0.0882 3.0523 -4.9771 16 1 -1.9266 1.8588 -5.6069 17 6 2.4374 2.6515 -6.0191 18 6 3.8645 3.0040 -5.5614 19 6 3.9113 1.6167 -4.8995 20 6 1.9421 2.0122 1.3642 21 6 3.2936 1.3525 1.6851 22 6 3.5388 1.2992 0.1679 23 1 -0.3634 0.4117 -0.9416 24 1 -0.3634 -1.0212 0.1143 25 1 -0.3633 0.6097 0.8273 26 1 1.8564 3.1995 -1.0147 27 1 0.4364 2.1439 -1.2086 28 1 -1.2357 -0.8156 -5.6926 29 1 2.4006 2.1486 -6.9854 30 1 1.7367 3.4833 -5.9467 31 1 3.9021 3.8288 -4.8497 32 1 4.5724 3.1204 -6.3820 33 1 4.3987 1.6143 -3.9245 34 1 4.2781 0.8295 -5.5580 35 1 1.9920 3.0989 1.2958 36 1 1.1252 1.6638 1.9960 37 1 3.2010 0.3697 2.1473 38 1 3.9841 2.0077 2.2163 39 1 4.0110 0.3752 -0.1659 40 1 4.0252 2.1910 -0.2274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:12 Heat of formation + Delta-G solvation = -97.313724 kcal Electronic energy + Delta-G solvation = -22347.300053 eV Core-core repulsion = 19128.657871 eV Total energy + Delta-G solvation = -3218.642182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78692 -40.69898 -38.67817 -36.61169 -36.11794 -34.59040 -31.62723 -28.95849 -28.03006 -26.58914 -26.49703 -25.03977 -23.83065 -22.00263 -20.39122 -20.05083 -19.25551 -17.80269 -17.49898 -17.27980 -16.93088 -16.49340 -16.19623 -16.02163 -15.63091 -15.16770 -14.99695 -14.68883 -14.47151 -13.82393 -13.49058 -13.25789 -13.24666 -13.07340 -12.98365 -12.67958 -12.37803 -12.12337 -12.02270 -11.89500 -11.87432 -11.68976 -11.61278 -11.23859 -11.04267 -10.98843 -10.64720 -10.39640 -10.37072 -8.40888 -6.50109 1.25803 1.27943 1.44634 1.65253 2.01967 2.30112 2.73397 2.97925 3.49458 3.62082 3.62677 3.84609 3.88535 3.94614 4.08926 4.21820 4.29244 4.33360 4.37369 4.41863 4.49159 4.57771 4.75023 4.78868 4.82914 4.85989 4.96163 5.06014 5.08220 5.10409 5.16556 5.25187 5.29935 5.41103 5.53233 5.59881 5.85404 6.30320 6.32179 6.55198 7.14420 7.26730 8.74659 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.008270 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.461202 B = 3385.036574 C = 4101.952998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.379 6.379 3 C 0.087 3.913 4 C -0.139 4.139 5 C 0.446 3.554 6 O -0.509 6.509 7 O -0.362 6.362 8 C 0.178 3.822 9 C -0.517 4.517 10 H 0.027 0.973 11 C 0.023 3.977 12 N -0.937 5.937 13 Si 0.937 3.063 14 H -0.277 1.277 15 H -0.214 1.214 16 H -0.297 1.297 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.125 4.125 23 H 0.016 0.984 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.100 0.900 28 H 0.267 0.733 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 12.738 13.301 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.298 6.298 3 C 0.047 3.953 4 C -0.176 4.176 5 C 0.288 3.712 6 O -0.396 6.396 7 O -0.280 6.280 8 C 0.143 3.857 9 C -0.554 4.554 10 H 0.045 0.955 11 C -0.176 4.176 12 N -0.576 5.576 13 Si 0.762 3.238 14 H -0.203 1.203 15 H -0.137 1.137 16 H -0.225 1.225 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.181 4.181 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.162 4.162 23 H 0.035 0.965 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.165 0.835 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.703 12.172 13.215 18.344 hybrid contribution -1.028 -0.650 -0.434 1.291 sum 2.675 11.521 12.782 17.415 Atomic orbital electron populations 1.22839 0.80827 1.03596 0.99912 1.87970 1.20258 1.26911 1.94647 1.22661 0.95969 0.83284 0.93343 1.22240 1.02973 1.03613 0.88823 1.23865 0.78330 0.82662 0.86319 1.90624 1.37659 1.23981 1.87359 1.86349 1.73521 1.51781 1.16387 1.21241 0.92685 0.91218 0.80583 1.21197 0.92157 0.94474 1.47581 0.95502 1.25902 0.99285 0.99196 0.93194 1.70092 1.10508 1.30011 1.47032 0.85934 0.77611 0.82287 0.77997 1.20302 1.13671 1.22450 1.23273 0.97801 0.98074 0.96791 1.22847 0.96250 0.95775 1.00587 1.23230 0.96147 0.98446 1.00236 1.23534 0.98904 1.01627 0.93746 1.22720 0.97368 1.01393 0.94584 1.23012 0.92899 1.02431 0.97872 0.96503 0.89177 0.90576 0.83548 0.88206 0.92437 0.89355 0.90794 0.89037 0.89262 0.92775 0.91132 0.86250 0.89924 0.90721 0.88626 0.93280 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 10.34 113.37 1.17 1.92 16 2 O -0.38 -13.81 10.17 -142.32 -1.45 -15.25 16 3 C 0.09 2.57 0.40 -10.27 0.00 2.56 16 4 C -0.14 -4.34 5.11 29.85 0.15 -4.19 16 5 C 0.45 19.35 6.97 71.24 0.50 19.85 16 6 O -0.51 -25.98 12.84 25.39 0.33 -25.66 16 7 O -0.36 -16.25 6.95 -51.42 -0.36 -16.61 16 8 C 0.18 8.54 0.10 -11.01 0.00 8.53 16 9 C -0.52 -31.02 8.05 25.60 0.21 -30.82 16 10 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 11 C 0.02 1.41 5.47 84.65 0.46 1.88 16 12 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 13 Si 0.94 45.51 25.68 68.60 1.76 47.27 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.21 -9.31 4.92 99.48 0.49 -8.83 16 16 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 17 C -0.12 -4.88 6.58 31.18 0.21 -4.67 16 18 C -0.12 -3.88 8.03 31.18 0.25 -3.63 16 19 C -0.14 -6.06 6.86 31.12 0.21 -5.85 16 20 C -0.14 -2.68 7.22 31.12 0.22 -2.45 16 21 C -0.12 -2.50 8.02 31.12 0.25 -2.25 16 22 C -0.12 -3.48 6.20 31.12 0.19 -3.29 16 23 H 0.02 0.59 6.78 -2.39 -0.02 0.57 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.08 1.72 7.22 -2.39 -0.02 1.70 16 26 H 0.15 3.25 7.97 -2.39 -0.02 3.23 16 27 H 0.10 3.11 6.47 -2.39 -0.02 3.09 16 28 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 29 H 0.09 3.60 8.09 -2.39 -0.02 3.58 16 30 H 0.07 2.76 6.81 -2.39 -0.02 2.75 16 31 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.05 2.30 7.19 -2.39 -0.02 2.29 16 34 H 0.07 3.12 8.09 -2.39 -0.02 3.10 16 35 H 0.12 1.59 7.98 -2.39 -0.02 1.57 16 36 H 0.08 1.44 7.39 -2.39 -0.02 1.42 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.05 1.71 8.05 -2.38 -0.02 1.69 16 40 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 Total: -1.00 -77.42 315.30 5.20 -72.22 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.80 Total: 20.63 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 3.82 Total: -22.40 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.48 Total: -57.52 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.76 Total: 47.27 kcal Total: -77.42 5.20 -72.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.096 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds