Wall clock time and date at job start Mon Mar 30 2020 07:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 112.84978 * 2 1 4 4 C 1.42901 * 114.00144 * 309.66697 * 3 2 1 5 5 C 1.50695 * 109.47127 * 180.02562 * 4 3 2 6 6 O 1.20823 * 120.00084 * 359.97438 * 5 4 3 7 7 O 1.34233 * 119.99666 * 180.02562 * 5 4 3 8 8 C 1.45200 * 116.99984 * 175.18700 * 7 5 4 9 9 C 1.50698 * 112.84998 * 54.50192 * 8 7 5 10 10 H 1.08001 * 119.99983 * 244.95438 * 9 8 7 11 11 C 1.37872 * 120.00288 * 64.95553 * 9 8 7 12 12 N 1.31526 * 119.99821 * 354.96031 * 11 9 8 13 13 Si 1.86794 * 120.00559 * 174.95791 * 11 9 8 14 14 H 1.48502 * 109.47145 * 90.00049 * 13 11 9 15 15 H 1.48499 * 109.47568 * 210.00217 * 13 11 9 16 16 H 1.48499 * 109.47012 * 330.00277 * 13 11 9 17 17 C 1.53780 * 113.61502 * 283.19804 * 8 7 5 18 18 C 1.53777 * 87.08158 * 220.01873 * 17 8 7 19 19 C 1.53779 * 113.61425 * 185.70080 * 8 7 5 20 20 C 1.53777 * 113.61880 * 228.80126 * 2 1 3 21 21 C 1.53950 * 87.02391 * 220.04796 * 20 2 1 22 22 C 1.53782 * 113.61469 * 131.19208 * 2 1 3 23 23 H 1.09001 * 109.46991 * 50.33365 * 1 2 3 24 24 H 1.08996 * 109.47299 * 290.33198 * 1 2 3 25 25 H 1.09005 * 109.46999 * 170.32962 * 1 2 3 26 26 H 1.09001 * 109.46793 * 300.00128 * 4 3 2 27 27 H 1.08998 * 109.46919 * 59.99687 * 4 3 2 28 28 H 0.96996 * 119.99795 * 185.00364 * 12 11 9 29 29 H 1.09011 * 113.61314 * 334.56928 * 17 8 7 30 30 H 1.08999 * 113.61815 * 105.46283 * 17 8 7 31 31 H 1.09004 * 113.61243 * 270.87926 * 18 17 8 32 32 H 1.09002 * 113.69294 * 139.99283 * 18 17 8 33 33 H 1.09008 * 113.61360 * 254.52487 * 19 8 7 34 34 H 1.08992 * 113.61561 * 25.34887 * 19 8 7 35 35 H 1.09002 * 113.61630 * 334.56892 * 20 2 1 36 36 H 1.09000 * 113.61414 * 105.46569 * 20 2 1 37 37 H 1.08998 * 113.53829 * 270.81034 * 21 20 2 38 38 H 1.09006 * 113.74411 * 139.93873 * 21 20 2 39 39 H 1.08995 * 113.62072 * 254.53421 * 22 2 1 40 40 H 1.09002 * 113.61564 * 25.44001 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 1.5427 2.1761 -1.0049 5 6 2.1965 3.5308 -0.9137 6 8 3.0399 3.7392 -0.0740 7 8 1.8411 4.5061 -1.7647 8 6 2.4325 5.8149 -1.5514 9 6 3.9384 5.7769 -1.5096 10 1 4.4599 6.0301 -0.5983 11 6 4.6505 5.4188 -2.6345 12 7 4.0160 5.0151 -3.7136 13 14 6.5164 5.5070 -2.6264 14 1 7.0713 4.2091 -2.1654 15 1 7.0044 5.7944 -3.9992 16 1 6.9568 6.5878 -1.7082 17 6 1.8015 6.5933 -0.3848 18 6 1.9106 7.8485 -1.2665 19 6 1.8693 6.9041 -2.4794 20 6 2.1461 -0.9280 -1.0601 21 6 3.1924 -1.3135 0.0013 22 6 2.1460 -0.9280 1.0603 23 1 -0.3633 0.6560 -0.7911 24 1 -0.3634 0.3571 0.9636 25 1 -0.3633 -1.0131 -0.1726 26 1 1.7309 1.7477 -1.9894 27 1 0.4683 2.2798 -0.8532 28 1 4.5173 4.6944 -4.4795 29 1 0.7743 6.2994 -0.1687 30 1 2.4287 6.6294 0.5060 31 1 2.8572 8.3779 -1.1572 32 1 1.0461 8.5087 -1.1975 33 1 2.5514 7.1913 -3.2798 34 1 0.8613 6.6945 -2.8372 35 1 1.4946 -1.7523 -1.3506 36 1 2.5650 -0.3970 -1.9149 37 1 4.0711 -0.6686 0.0007 38 1 3.4454 -2.3738 0.0034 39 1 2.5649 -0.3970 1.9150 40 1 1.4945 -1.7522 1.3507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:09 Heat of formation + Delta-G solvation = -83.926945 kcal Electronic energy + Delta-G solvation = -21531.147089 eV Core-core repulsion = 18313.085402 eV Total energy + Delta-G solvation = -3218.061687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88573 -39.05346 -37.08828 -35.30979 -34.03097 -32.24325 -29.60253 -28.10214 -26.03867 -25.63614 -24.54241 -23.12303 -22.51163 -19.99627 -19.29461 -18.54083 -16.97931 -16.12722 -15.87756 -15.65182 -15.04662 -14.82623 -14.56047 -14.33096 -13.91544 -13.75782 -13.32242 -13.13619 -12.58609 -12.24840 -12.10797 -11.68078 -11.54498 -11.24582 -11.06763 -10.98752 -10.86006 -10.82058 -10.71598 -10.37086 -10.24811 -10.06109 -9.90008 -9.77188 -9.24350 -9.15049 -8.76252 -8.50103 -8.44919 -6.07644 -4.15910 3.23392 3.33303 3.37491 3.41157 3.58193 4.37268 4.41210 4.55154 4.68971 4.86356 4.93429 5.24900 5.32750 5.44733 5.52304 5.62405 5.65005 5.69065 5.71587 5.76654 5.80479 5.92968 5.93799 5.98414 6.11982 6.18506 6.30455 6.36890 6.44623 6.51552 6.64696 6.90018 7.11633 7.32344 7.40355 7.59580 7.82556 7.95465 8.43491 8.85806 9.30972 9.51678 10.97255 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.006074 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.814275 B = 4608.552189 C = 5459.348611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 O -0.336 6.336 4 C 0.064 3.936 5 C 0.461 3.539 6 O -0.483 6.483 7 O -0.350 6.350 8 C 0.240 3.760 9 C -0.502 4.502 10 H 0.068 0.932 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.894 3.106 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.162 4.162 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.167 4.167 21 C -0.135 4.135 22 C -0.124 4.124 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 -9.077 3.897 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.046 3.954 3 O -0.254 6.254 4 C -0.014 4.014 5 C 0.301 3.699 6 O -0.369 6.369 7 O -0.268 6.268 8 C 0.206 3.794 9 C -0.539 4.539 10 H 0.086 0.914 11 C -0.132 4.132 12 N -0.505 5.505 13 Si 0.721 3.279 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.195 1.195 17 C -0.200 4.200 18 C -0.168 4.168 19 C -0.144 4.144 20 C -0.204 4.204 21 C -0.172 4.172 22 C -0.162 4.162 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.060 -8.886 4.055 12.052 hybrid contribution 0.870 -0.197 -0.300 0.941 sum -6.190 -9.083 3.755 11.616 Atomic orbital electron populations 1.22271 0.95144 1.02638 1.02911 1.22523 0.92089 0.83275 0.97551 1.88021 1.63305 1.20376 1.53717 1.21819 0.97645 0.88906 0.93026 1.22269 0.81428 0.86007 0.80196 1.90586 1.29025 1.82172 1.35115 1.86403 1.65925 1.21700 1.52724 1.21238 0.92461 0.74886 0.90802 1.20929 0.88652 1.47304 0.97055 0.91417 1.25040 0.98784 0.94304 0.95042 1.70028 1.35435 1.40708 1.04356 0.86548 0.85381 0.78813 0.77163 1.20489 1.21102 1.19542 1.23571 0.99473 0.97806 0.99167 1.22508 1.00594 0.95459 0.98199 1.22889 0.99517 0.94773 0.97212 1.23600 0.99047 0.99689 0.98103 1.22787 0.97592 1.00974 0.95893 1.22992 0.98154 0.97581 0.97423 0.91717 0.91626 0.91346 0.90154 0.90260 0.92836 0.92067 0.91989 0.90203 0.92951 0.90515 0.92272 0.89540 0.90733 0.89515 0.91609 0.90371 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 8.91 37.16 0.33 -1.57 16 2 C 0.09 1.17 1.26 -89.81 -0.11 1.06 16 3 O -0.34 -6.26 9.75 -55.19 -0.54 -6.79 16 4 C 0.06 1.19 5.90 36.00 0.21 1.41 16 5 C 0.46 11.25 7.68 36.00 0.28 11.53 16 6 O -0.48 -13.34 14.82 -25.47 -0.38 -13.72 16 7 O -0.35 -8.97 9.93 -39.27 -0.39 -9.36 16 8 C 0.24 6.14 0.50 -90.96 -0.05 6.09 16 9 C -0.50 -14.17 6.29 -34.44 -0.22 -14.38 16 10 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 11 C 0.07 2.05 5.24 -17.82 -0.09 1.96 16 12 N -0.87 -24.75 12.54 55.43 0.70 -24.05 16 13 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.16 -3.61 7.28 -25.92 -0.19 -3.80 16 18 C -0.13 -2.63 7.80 -25.92 -0.20 -2.83 16 19 C -0.11 -2.44 7.19 -25.92 -0.19 -2.63 16 20 C -0.17 -2.06 7.34 -25.83 -0.19 -2.25 16 21 C -0.14 -1.65 8.02 -25.83 -0.21 -1.86 16 22 C -0.12 -1.47 7.48 -25.92 -0.19 -1.67 16 23 H 0.06 0.71 6.27 -51.93 -0.33 0.39 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.60 7.98 -51.93 -0.41 0.19 16 26 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 27 H 0.08 1.25 6.39 -51.93 -0.33 0.92 16 28 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 29 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.06 1.42 8.09 -51.93 -0.42 1.00 16 31 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.90 7.63 -51.92 -0.40 1.50 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 0.86 7.99 -51.93 -0.41 0.44 16 36 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -32.03 328.01 -7.96 -40.00 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.46 Total: 0.99 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.82 Total: -8.95 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.70 Total: -24.05 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.31 Total: -29.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.03 -7.96 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.931 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds