Wall clock time and date at job start Mon Mar 30 2020 07:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 112.84978 * 2 1 4 4 C 1.42901 * 114.00144 * 309.66697 * 3 2 1 5 5 C 1.50695 * 109.47127 * 180.02562 * 4 3 2 6 6 O 1.20823 * 120.00084 * 359.97438 * 5 4 3 7 7 O 1.34233 * 119.99666 * 180.02562 * 5 4 3 8 8 C 1.45200 * 116.99984 * 175.18700 * 7 5 4 9 9 C 1.50698 * 112.84998 * 54.50192 * 8 7 5 10 10 H 1.08001 * 119.99983 * 244.95438 * 9 8 7 11 11 C 1.37872 * 120.00288 * 64.95553 * 9 8 7 12 12 N 1.31526 * 119.99821 * 354.96031 * 11 9 8 13 13 Si 1.86794 * 120.00559 * 174.95791 * 11 9 8 14 14 H 1.48502 * 109.47145 * 90.00049 * 13 11 9 15 15 H 1.48499 * 109.47568 * 210.00217 * 13 11 9 16 16 H 1.48499 * 109.47012 * 330.00277 * 13 11 9 17 17 C 1.53780 * 113.61502 * 283.19804 * 8 7 5 18 18 C 1.53777 * 87.08158 * 220.01873 * 17 8 7 19 19 C 1.53779 * 113.61425 * 185.70080 * 8 7 5 20 20 C 1.53777 * 113.61880 * 228.80126 * 2 1 3 21 21 C 1.53950 * 87.02391 * 220.04796 * 20 2 1 22 22 C 1.53782 * 113.61469 * 131.19208 * 2 1 3 23 23 H 1.09001 * 109.46991 * 50.33365 * 1 2 3 24 24 H 1.08996 * 109.47299 * 290.33198 * 1 2 3 25 25 H 1.09005 * 109.46999 * 170.32962 * 1 2 3 26 26 H 1.09001 * 109.46793 * 300.00128 * 4 3 2 27 27 H 1.08998 * 109.46919 * 59.99687 * 4 3 2 28 28 H 0.96996 * 119.99795 * 185.00364 * 12 11 9 29 29 H 1.09011 * 113.61314 * 334.56928 * 17 8 7 30 30 H 1.08999 * 113.61815 * 105.46283 * 17 8 7 31 31 H 1.09004 * 113.61243 * 270.87926 * 18 17 8 32 32 H 1.09002 * 113.69294 * 139.99283 * 18 17 8 33 33 H 1.09008 * 113.61360 * 254.52487 * 19 8 7 34 34 H 1.08992 * 113.61561 * 25.34887 * 19 8 7 35 35 H 1.09002 * 113.61630 * 334.56892 * 20 2 1 36 36 H 1.09000 * 113.61414 * 105.46569 * 20 2 1 37 37 H 1.08998 * 113.53829 * 270.81034 * 21 20 2 38 38 H 1.09006 * 113.74411 * 139.93873 * 21 20 2 39 39 H 1.08995 * 113.62072 * 254.53421 * 22 2 1 40 40 H 1.09002 * 113.61564 * 25.44001 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 1.5427 2.1761 -1.0049 5 6 2.1965 3.5308 -0.9137 6 8 3.0399 3.7392 -0.0740 7 8 1.8411 4.5061 -1.7647 8 6 2.4325 5.8149 -1.5514 9 6 3.9384 5.7769 -1.5096 10 1 4.4599 6.0301 -0.5983 11 6 4.6505 5.4188 -2.6345 12 7 4.0160 5.0151 -3.7136 13 14 6.5164 5.5070 -2.6264 14 1 7.0713 4.2091 -2.1654 15 1 7.0044 5.7944 -3.9992 16 1 6.9568 6.5878 -1.7082 17 6 1.8015 6.5933 -0.3848 18 6 1.9106 7.8485 -1.2665 19 6 1.8693 6.9041 -2.4794 20 6 2.1461 -0.9280 -1.0601 21 6 3.1924 -1.3135 0.0013 22 6 2.1460 -0.9280 1.0603 23 1 -0.3633 0.6560 -0.7911 24 1 -0.3634 0.3571 0.9636 25 1 -0.3633 -1.0131 -0.1726 26 1 1.7309 1.7477 -1.9894 27 1 0.4683 2.2798 -0.8532 28 1 4.5173 4.6944 -4.4795 29 1 0.7743 6.2994 -0.1687 30 1 2.4287 6.6294 0.5060 31 1 2.8572 8.3779 -1.1572 32 1 1.0461 8.5087 -1.1975 33 1 2.5514 7.1913 -3.2798 34 1 0.8613 6.6945 -2.8372 35 1 1.4946 -1.7523 -1.3506 36 1 2.5650 -0.3970 -1.9149 37 1 4.0711 -0.6686 0.0007 38 1 3.4454 -2.3738 0.0034 39 1 2.5649 -0.3970 1.9150 40 1 1.4945 -1.7522 1.3507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:08 Heat of formation + Delta-G solvation = -102.055549 kcal Electronic energy + Delta-G solvation = -21531.933204 eV Core-core repulsion = 18313.085402 eV Total energy + Delta-G solvation = -3218.847802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29062 -40.66789 -38.89032 -36.65526 -35.97086 -34.37167 -30.50970 -29.69102 -28.04976 -26.63730 -26.35453 -24.88138 -23.60527 -21.72228 -20.50075 -20.43179 -18.82725 -17.62425 -17.32282 -17.24206 -16.91687 -16.68226 -16.01245 -15.72613 -15.65001 -15.06127 -14.76393 -14.50509 -14.04318 -13.68667 -13.47293 -13.20502 -13.00320 -12.97939 -12.83659 -12.72037 -12.24017 -12.17298 -12.11790 -11.90100 -11.85530 -11.76427 -11.63074 -11.15009 -10.97504 -10.82468 -10.47467 -10.45233 -10.39900 -8.21206 -6.34523 1.31166 1.33599 1.43256 1.67089 1.81105 2.34635 2.93950 3.17730 3.55908 3.67175 3.89019 3.92825 3.98970 4.00985 4.06374 4.16998 4.24341 4.36713 4.41548 4.59740 4.66975 4.78703 4.80783 4.82595 4.85770 4.93713 4.99576 5.10079 5.14337 5.17094 5.30202 5.36400 5.44058 5.45654 5.63192 5.76568 5.95923 6.22578 6.46017 6.66335 7.29934 7.42607 8.82962 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.006074 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.814275 B = 4608.552189 C = 5459.348611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.065 3.935 3 O -0.370 6.370 4 C 0.078 3.922 5 C 0.449 3.551 6 O -0.527 6.527 7 O -0.358 6.358 8 C 0.210 3.790 9 C -0.516 4.516 10 H 0.044 0.956 11 C 0.032 3.968 12 N -0.889 5.889 13 Si 0.944 3.056 14 H -0.288 1.288 15 H -0.270 1.270 16 H -0.266 1.266 17 C -0.157 4.157 18 C -0.110 4.110 19 C -0.103 4.103 20 C -0.161 4.161 21 C -0.140 4.140 22 C -0.117 4.117 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.264 0.736 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 -10.154 3.891 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 O -0.290 6.290 4 C 0.001 3.999 5 C 0.292 3.708 6 O -0.416 6.416 7 O -0.275 6.275 8 C 0.176 3.824 9 C -0.554 4.554 10 H 0.062 0.938 11 C -0.171 4.171 12 N -0.527 5.527 13 Si 0.769 3.231 14 H -0.215 1.215 15 H -0.195 1.195 16 H -0.190 1.190 17 C -0.194 4.194 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.199 4.199 21 C -0.178 4.178 22 C -0.154 4.154 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.785 -9.961 4.039 13.882 hybrid contribution 1.397 0.061 -0.245 1.420 sum -7.387 -9.900 3.794 12.922 Atomic orbital electron populations 1.22268 0.92682 1.04569 1.02965 1.22986 0.94067 0.81280 0.99070 1.87979 1.64706 1.22672 1.53662 1.21716 0.98629 0.85887 0.93653 1.23394 0.80844 0.87583 0.78990 1.90552 1.31113 1.83125 1.36767 1.86381 1.65729 1.22218 1.53195 1.21538 0.91640 0.75520 0.93674 1.21006 0.90579 1.47615 0.96166 0.93812 1.25642 1.02360 0.94178 0.94880 1.70090 1.36573 1.41389 1.04654 0.85775 0.81177 0.78271 0.77848 1.21455 1.19475 1.19044 1.23529 0.99863 0.98308 0.97749 1.22427 1.02153 0.94893 0.95211 1.22863 0.99521 0.94595 0.97121 1.23647 0.99284 1.00099 0.96833 1.22772 0.96671 1.01873 0.96433 1.23087 0.98253 0.97885 0.96149 0.91832 0.91553 0.88333 0.89328 0.86804 0.92709 0.90092 0.93577 0.90824 0.88702 0.92940 0.90601 0.86118 0.92977 0.92855 0.88971 0.92176 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 8.91 71.98 0.64 -2.53 16 2 C 0.06 1.67 1.26 -10.27 -0.01 1.66 16 3 O -0.37 -13.85 9.75 -129.90 -1.27 -15.12 16 4 C 0.08 2.91 5.90 71.23 0.42 3.33 16 5 C 0.45 22.34 7.68 71.23 0.55 22.89 16 6 O -0.53 -30.20 14.82 28.40 0.42 -29.78 16 7 O -0.36 -18.52 9.93 -51.44 -0.51 -19.03 16 8 C 0.21 10.86 0.50 -11.02 -0.01 10.86 16 9 C -0.52 -29.96 6.29 25.60 0.16 -29.80 16 10 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 11 C 0.03 1.83 5.24 84.65 0.44 2.27 16 12 N -0.89 -51.50 12.54 21.45 0.27 -51.24 16 13 Si 0.94 45.97 29.54 68.60 2.03 48.00 16 14 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 17 C -0.16 -6.90 7.28 31.12 0.23 -6.67 16 18 C -0.11 -4.24 7.80 31.12 0.24 -4.00 16 19 C -0.10 -4.69 7.19 31.12 0.22 -4.47 16 20 C -0.16 -3.68 7.34 31.18 0.23 -3.45 16 21 C -0.14 -3.27 8.02 31.18 0.25 -3.02 16 22 C -0.12 -2.55 7.48 31.12 0.23 -2.32 16 23 H 0.06 1.21 6.27 -2.39 -0.01 1.19 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.10 1.27 7.98 -2.38 -0.02 1.25 16 26 H 0.09 3.12 7.73 -2.39 -0.02 3.10 16 27 H 0.11 3.39 6.39 -2.39 -0.02 3.37 16 28 H 0.26 14.52 8.32 -92.71 -0.77 13.75 16 29 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 30 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 31 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.05 2.61 7.63 -2.38 -0.02 2.59 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.12 1.92 7.99 -2.39 -0.02 1.90 16 36 H 0.05 1.42 7.79 -2.39 -0.02 1.40 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.13 1.85 8.10 -2.39 -0.02 1.83 16 Total: -1.00 -72.09 328.01 5.55 -66.55 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.01 Total: 15.89 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 3.60 Total: -15.26 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.27 Total: -51.24 kcal Atomic # 8 Polarization: -62.58 SS G_CDS: -1.36 Total: -63.93 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -72.09 5.55 -66.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.510 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds