Wall clock time and date at job start Mon Mar 30 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46706 * 2 1 4 4 H 1.08996 * 109.87540 * 54.54915 * 3 2 1 5 5 C 1.54105 * 109.99976 * 175.63832 * 3 2 1 6 6 C 1.54812 * 104.18805 * 121.52134 * 5 3 2 7 7 C 1.55002 * 102.09241 * 20.88032 * 6 5 3 8 8 H 1.08994 * 110.61638 * 81.47807 * 7 6 5 9 9 C 1.50697 * 110.61955 * 204.47606 * 7 6 5 10 10 O 1.20822 * 120.00406 * 110.52037 * 9 7 6 11 11 O 1.34233 * 119.99944 * 290.52804 * 9 7 6 12 12 C 1.45196 * 116.99772 * 177.70724 * 11 9 7 13 13 C 1.50701 * 112.85246 * 65.18642 * 12 11 9 14 14 H 1.07992 * 120.00176 * 242.60904 * 13 12 11 15 15 C 1.37876 * 119.99739 * 62.60965 * 13 12 11 16 16 N 1.31512 * 120.00788 * 353.75156 * 15 13 12 17 17 Si 1.86808 * 119.99792 * 173.75456 * 15 13 12 18 18 H 1.48500 * 109.46936 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47070 * 119.99803 * 17 15 13 20 20 H 1.48497 * 109.47357 * 240.00186 * 17 15 13 21 21 C 1.53776 * 113.61630 * 293.98654 * 12 11 9 22 22 C 1.53958 * 87.01967 * 220.05070 * 21 12 11 23 23 C 1.53781 * 87.11171 * 25.36182 * 22 21 12 24 24 O 1.43747 * 109.87881 * 293.54110 * 3 2 1 25 25 H 1.09000 * 109.46877 * 60.00754 * 1 2 3 26 26 H 1.08998 * 109.46552 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47359 * 300.00054 * 1 2 3 28 28 H 1.08994 * 109.46857 * 239.99789 * 2 1 3 29 29 H 1.09000 * 109.46877 * 119.99246 * 2 1 3 30 30 H 1.08992 * 110.48577 * 240.19716 * 5 3 2 31 31 H 1.08997 * 110.48686 * 2.71052 * 5 3 2 32 32 H 1.08996 * 110.90885 * 139.07563 * 6 5 3 33 33 H 1.08996 * 110.90960 * 262.64749 * 6 5 3 34 34 H 0.96996 * 120.00420 * 185.01120 * 16 15 13 35 35 H 1.08999 * 113.61612 * 334.57025 * 21 12 11 36 36 H 1.09001 * 113.61712 * 105.47634 * 21 12 11 37 37 H 1.08993 * 113.54033 * 270.80802 * 22 21 12 38 38 H 1.09008 * 113.66414 * 139.93373 * 22 21 12 39 39 H 1.08997 * 113.61357 * 220.08389 * 23 22 21 40 40 H 1.09004 * 113.61070 * 89.18742 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8350 5 6 3.5770 1.4583 0.1101 6 6 4.0407 2.2141 -1.1589 7 6 2.7642 3.0000 -1.5533 8 1 2.6758 3.9106 -0.9609 9 6 2.7727 3.3216 -3.0255 10 8 1.9908 2.7760 -3.7677 11 8 3.6490 4.2143 -3.5125 12 6 3.6347 4.4369 -4.9472 13 6 2.3481 5.0548 -5.4308 14 1 1.7165 4.5161 -6.1215 15 6 1.9773 6.3080 -4.9913 16 7 2.6803 6.9125 -4.0585 17 14 0.4763 7.1473 -5.7206 18 1 -0.1359 6.2638 -6.7452 19 1 -0.5115 7.4172 -4.6451 20 1 0.8832 8.4284 -6.3519 21 6 4.0750 3.2114 -5.7651 22 6 4.8304 4.1934 -6.6792 23 6 4.8941 5.1454 -5.4732 24 8 1.6938 2.0833 -1.2393 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.8897 1.9919 1.0076 31 1 3.9695 0.4414 0.1158 32 1 4.8606 2.8944 -0.9287 33 1 4.3264 1.5155 -1.9452 34 1 2.3793 7.7609 -3.6976 35 1 4.7294 2.5332 -5.2176 36 1 3.2510 2.6981 -6.2607 37 1 4.2268 4.5728 -7.5036 38 1 5.8064 3.8296 -7.0004 39 1 4.7304 6.1912 -5.7333 40 1 5.7729 4.9969 -4.8457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:17 Heat of formation + Delta-G solvation = -118.390702 kcal Electronic energy + Delta-G solvation = -21682.553966 eV Core-core repulsion = 18462.997818 eV Total energy + Delta-G solvation = -3219.556148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86859 -38.77437 -36.82134 -34.13355 -33.47377 -32.28893 -31.93258 -28.62990 -26.16910 -24.57604 -24.43469 -22.80492 -21.85067 -20.79333 -19.84245 -18.53608 -17.06033 -16.33222 -16.00568 -15.62626 -15.09284 -14.74264 -14.24835 -14.06636 -13.77550 -13.48170 -13.32644 -13.21466 -12.81914 -12.16310 -11.74222 -11.62432 -11.53699 -11.45530 -11.05996 -11.01574 -10.94478 -10.87152 -10.73692 -10.50234 -10.40372 -10.24549 -9.88215 -9.80854 -9.56181 -9.11317 -8.76497 -8.52112 -8.49483 -6.10498 -4.21800 3.24573 3.34576 3.36677 3.41089 3.62115 4.36607 4.39496 4.65290 4.77375 4.99015 5.16055 5.17817 5.30378 5.31891 5.41061 5.61858 5.71007 5.74934 5.78391 5.83115 5.88779 5.92616 5.94361 6.06660 6.14937 6.18120 6.25485 6.39147 6.43870 6.50569 6.63427 6.92619 7.09632 7.11267 7.29329 7.55867 7.80575 7.95625 8.36933 8.82869 9.26738 9.48666 10.94048 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.006134 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.561286 B = 4563.437996 C = 5210.529801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.072 3.928 4 H 0.068 0.932 5 C -0.151 4.151 6 C -0.138 4.138 7 C 0.082 3.918 8 H 0.098 0.902 9 C 0.467 3.533 10 O -0.493 6.493 11 O -0.342 6.342 12 C 0.241 3.759 13 C -0.512 4.512 14 H 0.069 0.931 15 C 0.075 3.925 16 N -0.862 5.862 17 Si 0.893 3.107 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.281 1.281 21 C -0.160 4.160 22 C -0.132 4.132 23 C -0.107 4.107 24 O -0.343 6.343 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -8.868 8.304 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C 0.014 3.986 4 H 0.086 0.914 5 C -0.188 4.188 6 C -0.176 4.176 7 C 0.023 3.977 8 H 0.115 0.885 9 C 0.307 3.693 10 O -0.380 6.380 11 O -0.258 6.258 12 C 0.207 3.793 13 C -0.550 4.550 14 H 0.087 0.913 15 C -0.131 4.131 16 N -0.499 5.499 17 Si 0.720 3.280 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.197 4.197 22 C -0.169 4.169 23 C -0.145 4.145 24 O -0.263 6.263 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.096 -8.850 7.963 12.302 hybrid contribution -0.774 0.595 -0.103 0.982 sum 2.323 -8.255 7.860 11.633 Atomic orbital electron populations 1.21728 0.95329 1.01251 1.02533 1.21693 0.96917 0.94820 1.02284 1.22842 0.93995 0.94117 0.87685 0.91408 1.23016 0.95538 1.01704 0.98572 1.23005 0.97542 0.99360 0.97645 1.22576 0.87298 0.94515 0.93343 0.88452 1.22265 0.79881 0.78000 0.89114 1.90568 1.37804 1.49972 1.59684 1.86462 1.54143 1.54222 1.30991 1.21218 0.94833 0.90614 0.72602 1.21003 1.05643 1.00113 1.28205 0.91327 1.25079 0.96637 0.96746 0.94605 1.70038 1.37558 1.16726 1.25543 0.86510 0.82643 0.79361 0.79476 1.19408 1.20848 1.20696 1.23560 0.99320 0.97649 0.99201 1.22572 0.98720 0.98370 0.97241 1.22901 0.96755 0.99801 0.95021 1.89015 1.41539 1.56365 1.39337 0.91567 0.93044 0.93038 0.91127 0.91115 0.90450 0.90247 0.89055 0.90279 0.92788 0.92289 0.91787 0.90203 0.92970 0.90709 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.82 37.16 0.37 -1.42 16 2 C -0.12 -1.40 5.44 -26.73 -0.15 -1.54 16 3 C 0.07 0.96 3.41 -26.15 -0.09 0.87 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.15 -1.73 6.65 -25.20 -0.17 -1.89 16 6 C -0.14 -2.00 6.57 -24.72 -0.16 -2.16 16 7 C 0.08 1.55 3.88 -26.83 -0.10 1.45 16 8 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 9 C 0.47 11.31 6.89 36.00 0.25 11.56 16 10 O -0.49 -13.45 15.01 -25.24 -0.38 -13.83 16 11 O -0.34 -8.71 9.76 -39.27 -0.38 -9.10 16 12 C 0.24 6.16 0.47 -90.96 -0.04 6.11 16 13 C -0.51 -14.43 7.08 -34.44 -0.24 -14.67 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.08 2.09 5.29 -17.82 -0.09 2.00 16 16 N -0.86 -24.45 12.78 55.43 0.71 -23.74 16 17 Si 0.89 21.68 29.55 -169.99 -5.02 16.66 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.16 -3.58 6.56 -25.83 -0.17 -3.75 16 22 C -0.13 -2.66 7.81 -25.83 -0.20 -2.86 16 23 C -0.11 -2.45 7.28 -25.92 -0.19 -2.64 16 24 O -0.34 -6.47 10.09 -54.32 -0.55 -7.02 16 25 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.50 8.09 -51.93 -0.42 1.08 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.07 1.83 7.97 -51.93 -0.41 1.42 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -31.97 329.18 -8.34 -40.31 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.68 Total: 0.70 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.00 Total: -8.95 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.71 Total: -23.74 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.31 Total: -29.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.97 -8.34 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.080 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds