Wall clock time and date at job start Mon Mar 30 2020 07:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46706 * 2 1 4 4 H 1.08996 * 109.87540 * 54.54915 * 3 2 1 5 5 C 1.54105 * 109.99976 * 175.63832 * 3 2 1 6 6 C 1.54812 * 104.18805 * 121.52134 * 5 3 2 7 7 C 1.55002 * 102.09241 * 20.88032 * 6 5 3 8 8 H 1.08994 * 110.61638 * 81.47807 * 7 6 5 9 9 C 1.50697 * 110.61955 * 204.47606 * 7 6 5 10 10 O 1.20822 * 120.00406 * 110.52037 * 9 7 6 11 11 O 1.34233 * 119.99944 * 290.52804 * 9 7 6 12 12 C 1.45196 * 116.99772 * 177.70724 * 11 9 7 13 13 C 1.50701 * 112.85246 * 65.18642 * 12 11 9 14 14 H 1.07992 * 120.00176 * 242.60904 * 13 12 11 15 15 C 1.37876 * 119.99739 * 62.60965 * 13 12 11 16 16 N 1.31512 * 120.00788 * 353.75156 * 15 13 12 17 17 Si 1.86808 * 119.99792 * 173.75456 * 15 13 12 18 18 H 1.48500 * 109.46936 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47070 * 119.99803 * 17 15 13 20 20 H 1.48497 * 109.47357 * 240.00186 * 17 15 13 21 21 C 1.53776 * 113.61630 * 293.98654 * 12 11 9 22 22 C 1.53958 * 87.01967 * 220.05070 * 21 12 11 23 23 C 1.53781 * 87.11171 * 25.36182 * 22 21 12 24 24 O 1.43747 * 109.87881 * 293.54110 * 3 2 1 25 25 H 1.09000 * 109.46877 * 60.00754 * 1 2 3 26 26 H 1.08998 * 109.46552 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47359 * 300.00054 * 1 2 3 28 28 H 1.08994 * 109.46857 * 239.99789 * 2 1 3 29 29 H 1.09000 * 109.46877 * 119.99246 * 2 1 3 30 30 H 1.08992 * 110.48577 * 240.19716 * 5 3 2 31 31 H 1.08997 * 110.48686 * 2.71052 * 5 3 2 32 32 H 1.08996 * 110.90885 * 139.07563 * 6 5 3 33 33 H 1.08996 * 110.90960 * 262.64749 * 6 5 3 34 34 H 0.96996 * 120.00420 * 185.01120 * 16 15 13 35 35 H 1.08999 * 113.61612 * 334.57025 * 21 12 11 36 36 H 1.09001 * 113.61712 * 105.47634 * 21 12 11 37 37 H 1.08993 * 113.54033 * 270.80802 * 22 21 12 38 38 H 1.09008 * 113.66414 * 139.93373 * 22 21 12 39 39 H 1.08997 * 113.61357 * 220.08389 * 23 22 21 40 40 H 1.09004 * 113.61070 * 89.18742 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8350 5 6 3.5770 1.4583 0.1101 6 6 4.0407 2.2141 -1.1589 7 6 2.7642 3.0000 -1.5533 8 1 2.6758 3.9106 -0.9609 9 6 2.7727 3.3216 -3.0255 10 8 1.9908 2.7760 -3.7677 11 8 3.6490 4.2143 -3.5125 12 6 3.6347 4.4369 -4.9472 13 6 2.3481 5.0548 -5.4308 14 1 1.7165 4.5161 -6.1215 15 6 1.9773 6.3080 -4.9913 16 7 2.6803 6.9125 -4.0585 17 14 0.4763 7.1473 -5.7206 18 1 -0.1359 6.2638 -6.7452 19 1 -0.5115 7.4172 -4.6451 20 1 0.8832 8.4284 -6.3519 21 6 4.0750 3.2114 -5.7651 22 6 4.8304 4.1934 -6.6792 23 6 4.8941 5.1454 -5.4732 24 8 1.6938 2.0833 -1.2393 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.8897 1.9919 1.0076 31 1 3.9695 0.4414 0.1158 32 1 4.8606 2.8944 -0.9287 33 1 4.3264 1.5155 -1.9452 34 1 2.3793 7.7609 -3.6976 35 1 4.7294 2.5332 -5.2176 36 1 3.2510 2.6981 -6.2607 37 1 4.2268 4.5728 -7.5036 38 1 5.8064 3.8296 -7.0004 39 1 4.7304 6.1912 -5.7333 40 1 5.7729 4.9969 -4.8457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:16 Heat of formation + Delta-G solvation = -136.529711 kcal Electronic energy + Delta-G solvation = -21683.340532 eV Core-core repulsion = 18462.997818 eV Total energy + Delta-G solvation = -3220.342714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45960 -40.35405 -38.64710 -36.06675 -34.55173 -34.40339 -33.12475 -29.89475 -28.18355 -26.38874 -25.87293 -24.46658 -22.95734 -21.83225 -21.55337 -20.47573 -18.91006 -17.74274 -17.58992 -17.16404 -16.85318 -16.65492 -16.03999 -15.58676 -15.46494 -14.73461 -14.49744 -14.43410 -14.13818 -13.85314 -13.54408 -13.10060 -12.96386 -12.86536 -12.81956 -12.70686 -12.44686 -12.29800 -12.13090 -11.96309 -11.81282 -11.71432 -11.66585 -11.47727 -11.08774 -10.82273 -10.73149 -10.46712 -10.44840 -8.22823 -6.40080 1.30750 1.33905 1.45642 1.59623 1.96669 2.33724 2.98479 3.14926 3.52675 3.74902 3.90365 3.91804 3.99027 4.07557 4.15930 4.20101 4.28746 4.36887 4.40153 4.60722 4.62518 4.77447 4.83296 4.87628 4.91489 4.92456 5.02017 5.05929 5.14082 5.16443 5.27375 5.35087 5.41870 5.42699 5.60697 5.73922 5.90920 5.99670 6.39726 6.64641 7.26714 7.40538 8.81300 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.006134 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.561286 B = 4563.437996 C = 5210.529801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.137 4.137 6 C -0.131 4.131 7 C 0.082 3.918 8 H 0.103 0.897 9 C 0.457 3.543 10 O -0.536 6.536 11 O -0.350 6.350 12 C 0.213 3.787 13 C -0.531 4.531 14 H 0.044 0.956 15 C 0.034 3.966 16 N -0.884 5.884 17 Si 0.947 3.053 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.264 1.264 21 C -0.155 4.155 22 C -0.111 4.111 23 C -0.103 4.103 24 O -0.379 6.379 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.266 0.734 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -9.598 9.805 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.001 3.999 4 H 0.099 0.901 5 C -0.174 4.174 6 C -0.169 4.169 7 C 0.023 3.977 8 H 0.121 0.879 9 C 0.300 3.700 10 O -0.426 6.426 11 O -0.266 6.266 12 C 0.179 3.821 13 C -0.568 4.568 14 H 0.062 0.938 15 C -0.170 4.170 16 N -0.521 5.521 17 Si 0.772 3.228 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.189 1.189 21 C -0.192 4.192 22 C -0.148 4.148 23 C -0.141 4.141 24 O -0.299 6.299 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.424 -9.578 9.475 14.180 hybrid contribution -1.234 0.767 -0.531 1.547 sum 3.189 -8.811 8.944 12.954 Atomic orbital electron populations 1.21728 0.95890 1.01974 1.01285 1.21749 0.96472 0.93884 1.03361 1.23245 0.95931 0.94828 0.85888 0.90065 1.23027 0.93535 1.02993 0.97832 1.23028 0.95754 0.99212 0.98923 1.22623 0.90057 0.95755 0.89279 0.87926 1.23373 0.78601 0.76730 0.91329 1.90531 1.39290 1.51413 1.61390 1.86439 1.54493 1.54687 1.30998 1.21494 0.94935 0.92725 0.72972 1.21090 1.06798 1.00596 1.28359 0.93784 1.25704 0.99151 0.97165 0.94936 1.70098 1.38680 1.17069 1.26231 0.85686 0.79647 0.78836 0.78642 1.19913 1.20798 1.18901 1.23503 0.99211 0.97225 0.99289 1.22492 1.00323 0.96149 0.95823 1.22867 0.96092 0.98793 0.96312 1.89000 1.42198 1.56735 1.41997 0.95202 0.91384 0.91845 0.92487 0.87391 0.87585 0.87948 0.87312 0.91232 0.92511 0.90691 0.93792 0.90723 0.88730 0.92917 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.82 71.99 0.71 -2.72 16 2 C -0.12 -2.48 5.44 30.60 0.17 -2.32 16 3 C 0.06 1.44 3.41 30.97 0.11 1.55 16 4 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 5 C -0.14 -2.64 6.65 31.59 0.21 -2.43 16 6 C -0.13 -3.58 6.57 31.90 0.21 -3.37 16 7 C 0.08 3.10 3.88 30.53 0.12 3.21 16 8 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 9 C 0.46 22.72 6.89 71.24 0.49 23.21 16 10 O -0.54 -30.59 15.01 28.18 0.42 -30.17 16 11 O -0.35 -18.15 9.76 -51.45 -0.50 -18.65 16 12 C 0.21 11.05 0.47 -11.01 -0.01 11.04 16 13 C -0.53 -30.89 7.08 25.60 0.18 -30.71 16 14 H 0.04 2.70 7.81 -2.91 -0.02 2.67 16 15 C 0.03 1.93 5.29 84.65 0.45 2.38 16 16 N -0.88 -50.83 12.78 21.45 0.27 -50.55 16 17 Si 0.95 45.31 29.55 68.60 2.03 47.34 16 18 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.15 -6.96 6.56 31.18 0.20 -6.76 16 22 C -0.11 -4.32 7.81 31.18 0.24 -4.07 16 23 C -0.10 -4.66 7.28 31.12 0.23 -4.43 16 24 O -0.38 -14.38 10.09 -130.72 -1.32 -15.70 16 25 H 0.03 0.87 7.89 -2.39 -0.02 0.85 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.56 7.70 -2.39 -0.02 1.54 16 32 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 34 H 0.27 14.40 8.32 -92.71 -0.77 13.63 16 35 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.04 2.11 8.09 -2.39 -0.02 2.09 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 39 H 0.05 2.59 7.97 -2.39 -0.02 2.57 16 40 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -72.47 329.18 5.21 -67.26 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.00 Total: 15.88 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 3.31 Total: -15.41 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.27 Total: -50.55 kcal Atomic # 8 Polarization: -63.12 SS G_CDS: -1.40 Total: -64.51 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.47 5.21 -67.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.270 kcal (2) G-P(sol) polarization free energy of solvation -72.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds