Wall clock time and date at job start Mon Mar 30 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46879 * 240.00226 * 3 2 1 5 5 H 1.48502 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47193 * 120.00273 * 3 2 1 7 7 C 1.37874 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 174.95998 * 7 2 1 9 9 C 1.50700 * 120.00588 * 354.95637 * 7 2 1 10 10 O 1.45193 * 112.84977 * 64.95374 * 9 7 2 11 11 C 1.34228 * 117.00121 * 54.50986 * 10 9 7 12 12 O 1.20831 * 119.99968 * 355.18394 * 11 10 9 13 13 C 1.50702 * 120.00244 * 175.18998 * 11 10 9 14 14 H 1.08997 * 108.88917 * 298.75461 * 13 11 10 15 15 C 1.54205 * 108.97606 * 179.97438 * 13 11 10 16 16 C 1.50622 * 109.06564 * 161.83359 * 15 13 11 17 17 C 1.53817 * 112.47031 * 90.32614 * 16 15 13 18 18 O 1.43989 * 113.41378 * 317.88479 * 17 16 15 19 19 C 1.40327 * 116.57855 * 317.89743 * 18 17 16 20 20 C 1.46286 * 108.97626 * 57.52344 * 13 11 10 21 21 C 1.53779 * 113.69356 * 196.22476 * 9 7 2 22 22 C 1.53792 * 87.08100 * 89.12546 * 21 9 7 23 23 C 1.53782 * 87.07993 * 25.43250 * 22 21 9 24 24 H 0.97003 * 119.99952 * 4.99317 * 1 2 3 25 25 H 1.09007 * 109.53718 * 281.71034 * 15 13 11 26 26 H 1.09002 * 109.54031 * 41.95396 * 15 13 11 27 27 H 1.08999 * 108.88206 * 211.09453 * 16 15 13 28 28 H 1.08999 * 108.88430 * 329.55179 * 16 15 13 29 29 H 1.09001 * 108.69859 * 196.86649 * 17 16 15 30 30 H 1.09000 * 108.59613 * 78.82506 * 17 16 15 31 31 H 1.09000 * 109.59182 * 335.27582 * 19 18 17 32 32 H 1.08996 * 109.60234 * 214.80930 * 19 18 17 33 33 H 1.08990 * 108.93731 * 302.75784 * 20 13 11 34 34 H 1.08999 * 108.93745 * 61.45323 * 20 13 11 35 35 H 1.09000 * 113.61422 * 203.67384 * 21 9 7 36 36 H 1.09001 * 113.61417 * 334.57972 * 21 9 7 37 37 H 1.09001 * 113.61234 * 270.88430 * 22 21 9 38 38 H 1.09000 * 113.61099 * 139.98076 * 22 21 9 39 39 H 1.09000 * 113.61286 * 220.01864 * 23 22 21 40 40 H 1.09004 * 113.68992 * 89.12461 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0813 -1.1959 -0.0827 9 6 1.2553 -2.4967 0.1136 10 8 0.3931 -2.7530 -1.0262 11 6 0.9632 -2.7209 -2.2409 12 8 2.1228 -2.4012 -2.3558 13 6 0.1571 -3.0833 -3.4615 14 1 -0.1807 -4.1154 -3.3676 15 6 1.0542 -2.9604 -4.7097 16 6 0.4264 -3.7267 -5.8443 17 6 -0.5221 -2.8572 -6.6871 18 8 -1.3583 -1.9914 -5.8970 19 6 -1.9180 -2.5470 -4.7363 20 6 -1.0106 -2.2055 -3.5383 21 6 2.1468 -3.6911 0.4926 22 6 1.8614 -3.3370 1.9618 23 6 0.5565 -2.6886 1.4701 24 1 -0.4850 0.8369 -0.0731 25 1 1.1502 -1.9108 -4.9877 26 1 2.0396 -3.3728 -4.4924 27 1 1.2161 -4.1135 -6.4883 28 1 -0.1352 -4.5664 -5.4348 29 1 -1.1597 -3.5112 -7.2820 30 1 0.0756 -2.2448 -7.3622 31 1 -1.9874 -3.6292 -4.8459 32 1 -2.9115 -2.1293 -4.5734 33 1 -1.5877 -2.3032 -2.6189 34 1 -0.6719 -1.1740 -3.6351 35 1 1.7382 -4.6547 0.1884 36 1 3.1912 -3.5641 0.2078 37 1 2.5703 -2.6252 2.3849 38 1 1.7036 -4.2079 2.5980 39 1 0.3172 -1.7523 1.9743 40 1 -0.2877 -3.3771 1.4328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:26 Heat of formation + Delta-G solvation = -119.159406 kcal Electronic energy + Delta-G solvation = -22042.593762 eV Core-core repulsion = 18823.004280 eV Total energy + Delta-G solvation = -3219.589481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85306 -38.69854 -37.08479 -34.43467 -34.04208 -32.38177 -32.21516 -27.12936 -26.18480 -25.67340 -24.54424 -23.11666 -21.44270 -20.52461 -19.27431 -18.53572 -17.14247 -16.37960 -16.25513 -15.34006 -15.11022 -14.88376 -14.73368 -14.22384 -13.99482 -13.63559 -13.10109 -12.95363 -12.66815 -12.08976 -12.05522 -11.56788 -11.36283 -11.12947 -11.10380 -10.94648 -10.84917 -10.49214 -10.37288 -10.32485 -10.24660 -10.18407 -9.88495 -9.76231 -9.52724 -9.02000 -8.73844 -8.48165 -8.40679 -6.05800 -4.14105 3.31667 3.35611 3.40595 3.60288 3.95653 4.07274 4.40854 4.74757 4.95802 5.13382 5.17196 5.23774 5.37863 5.43382 5.61474 5.63771 5.72578 5.77004 5.81527 5.88610 5.97066 6.02581 6.12113 6.27598 6.33110 6.42338 6.48117 6.54153 6.63009 6.66195 6.77827 6.88486 7.11484 7.34495 7.50948 7.59013 7.84185 7.99130 8.46727 8.86308 9.33037 9.53341 10.98924 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.006838 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.203872 B = 4093.513926 C = 4697.851837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.504 4.504 8 H 0.065 0.935 9 C 0.240 3.760 10 O -0.349 6.349 11 C 0.463 3.537 12 O -0.503 6.503 13 C -0.078 4.078 14 H 0.086 0.914 15 C -0.103 4.103 16 C -0.153 4.153 17 C 0.064 3.936 18 O -0.385 6.385 19 C 0.072 3.928 20 C -0.143 4.143 21 C -0.162 4.162 22 C -0.131 4.131 23 C -0.108 4.108 24 H 0.262 0.738 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 -7.699 -7.833 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.206 3.794 10 O -0.266 6.266 11 C 0.304 3.696 12 O -0.390 6.390 13 C -0.097 4.097 14 H 0.104 0.896 15 C -0.140 4.140 16 C -0.190 4.190 17 C -0.013 4.013 18 O -0.304 6.304 19 C -0.005 4.005 20 C -0.181 4.181 21 C -0.200 4.200 22 C -0.168 4.168 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.992 -7.290 -7.788 11.079 hybrid contribution 0.586 0.654 0.051 0.880 sum -2.407 -6.635 -7.737 10.473 Atomic orbital electron populations 1.70008 1.05719 1.27029 1.47542 1.25009 0.94877 0.99149 0.94003 0.86660 0.79789 0.82816 0.78886 1.20054 1.21200 1.20003 1.20852 0.93400 0.88646 1.51208 0.91653 1.21149 0.86315 0.92057 0.79858 1.86410 1.45451 1.79732 1.14983 1.22823 0.86475 0.74985 0.85286 1.90551 1.18516 1.42863 1.87116 1.20131 0.96223 1.01110 0.92251 0.89570 1.21201 0.98740 1.01951 0.92134 1.21951 0.99493 0.99151 0.98431 1.22921 0.92224 0.93440 0.92672 1.87464 1.65007 1.40341 1.37616 1.22358 0.96133 0.97618 0.84420 1.21046 0.96272 1.01047 0.99692 1.23564 1.00908 0.98751 0.96788 1.22511 0.99429 0.99405 0.95455 1.22889 0.95016 0.99974 0.96654 0.92804 0.90721 0.90345 0.90686 0.91795 0.93565 0.89755 0.93232 0.89620 0.89386 0.90467 0.92204 0.92129 0.90253 0.93048 0.90582 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.41 12.54 55.43 0.69 -23.71 16 2 C 0.07 2.08 5.24 -17.82 -0.09 1.98 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -14.05 6.29 -34.44 -0.22 -14.27 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.24 6.07 0.50 -90.96 -0.05 6.02 16 10 O -0.35 -8.75 9.54 -39.25 -0.37 -9.12 16 11 C 0.46 10.79 6.86 36.01 0.25 11.03 16 12 O -0.50 -13.11 13.92 -18.75 -0.26 -13.37 16 13 C -0.08 -1.38 2.18 -94.33 -0.21 -1.58 16 14 H 0.09 1.33 7.60 -51.93 -0.39 0.94 16 15 C -0.10 -1.63 4.53 -27.29 -0.12 -1.75 16 16 C -0.15 -1.80 5.32 -27.50 -0.15 -1.94 16 17 C 0.06 0.74 6.67 37.58 0.25 0.99 16 18 O -0.39 -5.65 10.17 -33.70 -0.34 -5.99 16 19 C 0.07 0.98 6.38 37.74 0.24 1.22 16 20 C -0.14 -2.46 4.62 -29.34 -0.14 -2.60 16 21 C -0.16 -3.58 7.28 -25.91 -0.19 -3.77 16 22 C -0.13 -2.64 7.81 -25.91 -0.20 -2.84 16 23 C -0.11 -2.47 7.19 -25.91 -0.19 -2.66 16 24 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 25 H 0.07 1.30 7.82 -51.93 -0.41 0.90 16 26 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.70 6.84 -51.93 -0.36 0.34 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.58 6.98 -51.93 -0.36 0.22 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.61 7.82 -51.93 -0.41 1.20 16 34 H 0.08 1.55 8.13 -51.93 -0.42 1.12 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.37 8.09 -51.93 -0.42 0.95 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.89 7.63 -51.93 -0.40 1.49 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -31.02 317.48 -7.80 -38.82 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.48 Total: 1.94 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.81 Total: -10.17 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.69 Total: -23.71 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.98 Total: -28.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.02 -7.80 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.342 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds