Wall clock time and date at job start Mon Mar 30 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46879 * 240.00226 * 3 2 1 5 5 H 1.48502 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47193 * 120.00273 * 3 2 1 7 7 C 1.37874 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 174.95998 * 7 2 1 9 9 C 1.50700 * 120.00588 * 354.95637 * 7 2 1 10 10 O 1.45193 * 112.84977 * 64.95374 * 9 7 2 11 11 C 1.34228 * 117.00121 * 54.50986 * 10 9 7 12 12 O 1.20831 * 119.99968 * 355.18394 * 11 10 9 13 13 C 1.50702 * 120.00244 * 175.18998 * 11 10 9 14 14 H 1.08997 * 108.88917 * 298.75461 * 13 11 10 15 15 C 1.54205 * 108.97606 * 179.97438 * 13 11 10 16 16 C 1.50622 * 109.06564 * 161.83359 * 15 13 11 17 17 C 1.53817 * 112.47031 * 90.32614 * 16 15 13 18 18 O 1.43989 * 113.41378 * 317.88479 * 17 16 15 19 19 C 1.40327 * 116.57855 * 317.89743 * 18 17 16 20 20 C 1.46286 * 108.97626 * 57.52344 * 13 11 10 21 21 C 1.53779 * 113.69356 * 196.22476 * 9 7 2 22 22 C 1.53792 * 87.08100 * 89.12546 * 21 9 7 23 23 C 1.53782 * 87.07993 * 25.43250 * 22 21 9 24 24 H 0.97003 * 119.99952 * 4.99317 * 1 2 3 25 25 H 1.09007 * 109.53718 * 281.71034 * 15 13 11 26 26 H 1.09002 * 109.54031 * 41.95396 * 15 13 11 27 27 H 1.08999 * 108.88206 * 211.09453 * 16 15 13 28 28 H 1.08999 * 108.88430 * 329.55179 * 16 15 13 29 29 H 1.09001 * 108.69859 * 196.86649 * 17 16 15 30 30 H 1.09000 * 108.59613 * 78.82506 * 17 16 15 31 31 H 1.09000 * 109.59182 * 335.27582 * 19 18 17 32 32 H 1.08996 * 109.60234 * 214.80930 * 19 18 17 33 33 H 1.08990 * 108.93731 * 302.75784 * 20 13 11 34 34 H 1.08999 * 108.93745 * 61.45323 * 20 13 11 35 35 H 1.09000 * 113.61422 * 203.67384 * 21 9 7 36 36 H 1.09001 * 113.61417 * 334.57972 * 21 9 7 37 37 H 1.09001 * 113.61234 * 270.88430 * 22 21 9 38 38 H 1.09000 * 113.61099 * 139.98076 * 22 21 9 39 39 H 1.09000 * 113.61286 * 220.01864 * 23 22 21 40 40 H 1.09004 * 113.68992 * 89.12461 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0813 -1.1959 -0.0827 9 6 1.2553 -2.4967 0.1136 10 8 0.3931 -2.7530 -1.0262 11 6 0.9632 -2.7209 -2.2409 12 8 2.1228 -2.4012 -2.3558 13 6 0.1571 -3.0833 -3.4615 14 1 -0.1807 -4.1154 -3.3676 15 6 1.0542 -2.9604 -4.7097 16 6 0.4264 -3.7267 -5.8443 17 6 -0.5221 -2.8572 -6.6871 18 8 -1.3583 -1.9914 -5.8970 19 6 -1.9180 -2.5470 -4.7363 20 6 -1.0106 -2.2055 -3.5383 21 6 2.1468 -3.6911 0.4926 22 6 1.8614 -3.3370 1.9618 23 6 0.5565 -2.6886 1.4701 24 1 -0.4850 0.8369 -0.0731 25 1 1.1502 -1.9108 -4.9877 26 1 2.0396 -3.3728 -4.4924 27 1 1.2161 -4.1135 -6.4883 28 1 -0.1352 -4.5664 -5.4348 29 1 -1.1597 -3.5112 -7.2820 30 1 0.0756 -2.2448 -7.3622 31 1 -1.9874 -3.6292 -4.8459 32 1 -2.9115 -2.1293 -4.5734 33 1 -1.5877 -2.3032 -2.6189 34 1 -0.6719 -1.1740 -3.6351 35 1 1.7382 -4.6547 0.1884 36 1 3.1912 -3.5641 0.2078 37 1 2.5703 -2.6252 2.3849 38 1 1.7036 -4.2079 2.5980 39 1 0.3172 -1.7523 1.9743 40 1 -0.2877 -3.3771 1.4328 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:26 Heat of formation + Delta-G solvation = -137.266408 kcal Electronic energy + Delta-G solvation = -22043.378940 eV Core-core repulsion = 18823.004280 eV Total energy + Delta-G solvation = -3220.374660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46158 -40.15543 -38.79582 -36.05554 -35.68075 -34.34938 -33.48850 -28.56192 -27.95623 -26.96290 -26.35181 -24.89446 -22.94613 -21.62136 -20.82235 -20.45976 -18.85112 -17.97625 -17.48483 -17.01214 -16.85019 -16.58897 -16.17970 -15.83562 -15.67262 -15.08582 -14.63525 -14.41582 -14.02106 -13.85079 -13.48872 -13.23495 -12.98596 -12.98319 -12.78278 -12.47436 -12.29662 -12.17049 -12.09600 -11.80703 -11.78657 -11.62003 -11.56655 -11.34586 -11.06297 -10.80842 -10.55054 -10.40412 -10.22045 -8.19033 -6.32012 1.31610 1.33471 1.40628 1.78697 2.32772 2.39222 2.97539 3.12931 3.57899 3.81834 3.94081 3.98382 4.01764 4.10965 4.12895 4.27105 4.35561 4.48130 4.51930 4.54294 4.64682 4.71838 4.80910 4.85301 4.93090 4.98662 5.11906 5.12466 5.13771 5.17669 5.33476 5.36237 5.37710 5.46046 5.64611 5.78580 6.02375 6.51121 6.53872 6.67593 7.32768 7.48695 8.84375 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.006838 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.203872 B = 4093.513926 C = 4697.851837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.033 3.967 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.517 4.517 8 H 0.043 0.957 9 C 0.212 3.788 10 O -0.360 6.360 11 C 0.451 3.549 12 O -0.540 6.540 13 C -0.070 4.070 14 H 0.120 0.880 15 C -0.097 4.097 16 C -0.145 4.145 17 C 0.057 3.943 18 O -0.409 6.409 19 C 0.082 3.918 20 C -0.136 4.136 21 C -0.155 4.155 22 C -0.111 4.111 23 C -0.106 4.106 24 H 0.262 0.738 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -9.511 -8.718 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.169 4.169 3 Si 0.766 3.234 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.061 0.939 9 C 0.178 3.822 10 O -0.276 6.276 11 C 0.294 3.706 12 O -0.431 6.431 13 C -0.089 4.089 14 H 0.137 0.863 15 C -0.135 4.135 16 C -0.183 4.183 17 C -0.019 4.019 18 O -0.328 6.328 19 C 0.005 3.995 20 C -0.174 4.174 21 C -0.193 4.193 22 C -0.148 4.148 23 C -0.144 4.144 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.838 -9.105 -8.668 13.144 hybrid contribution 0.887 1.212 0.294 1.531 sum -2.951 -7.893 -8.374 11.880 Atomic orbital electron populations 1.70081 1.06451 1.27464 1.48320 1.25601 0.95684 1.01684 0.93961 0.85901 0.78892 0.80011 0.78633 1.21300 1.20153 1.18716 1.20944 0.92544 0.90551 1.51388 0.93924 1.21401 0.87643 0.92370 0.80782 1.86393 1.45651 1.79744 1.15808 1.24001 0.86655 0.73783 0.86137 1.90521 1.20372 1.44617 1.87559 1.20295 0.95783 1.02768 0.90085 0.86261 1.21150 0.98258 1.01100 0.92951 1.21911 1.00323 0.98910 0.97130 1.23157 0.92495 0.93770 0.92469 1.87447 1.65528 1.42022 1.37790 1.22318 0.95311 0.99515 0.82387 1.21004 0.96544 0.98602 1.01263 1.23509 0.99460 0.98352 0.97996 1.22429 0.97157 1.00341 0.94869 1.22864 0.96771 0.99445 0.95316 0.92883 0.93319 0.91650 0.88283 0.89910 0.90483 0.89269 0.90138 0.88317 0.90917 0.94545 0.90235 0.93537 0.90907 0.88894 0.93143 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.25 12.54 21.45 0.27 -50.98 16 2 C 0.03 1.91 5.24 84.65 0.44 2.35 16 3 Si 0.94 45.91 29.54 68.60 2.03 47.93 16 4 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.52 -29.75 6.29 25.60 0.16 -29.59 16 8 H 0.04 2.58 7.81 -2.91 -0.02 2.55 16 9 C 0.21 10.87 0.50 -11.01 -0.01 10.86 16 10 O -0.36 -18.30 9.54 -51.39 -0.49 -18.79 16 11 C 0.45 21.44 6.86 71.24 0.49 21.93 16 12 O -0.54 -29.27 13.92 21.95 0.31 -28.96 16 13 C -0.07 -2.45 2.18 -13.20 -0.03 -2.48 16 14 H 0.12 3.38 7.60 -2.39 -0.02 3.36 16 15 C -0.10 -3.02 4.53 30.23 0.14 -2.88 16 16 C -0.15 -2.95 5.32 30.10 0.16 -2.79 16 17 C 0.06 1.13 6.67 72.26 0.48 1.62 16 18 O -0.41 -11.15 10.17 -143.49 -1.46 -12.60 16 19 C 0.08 2.05 6.38 72.36 0.46 2.51 16 20 C -0.14 -4.70 4.62 28.91 0.13 -4.56 16 21 C -0.16 -6.76 7.28 31.12 0.23 -6.54 16 22 C -0.11 -4.30 7.81 31.12 0.24 -4.05 16 23 C -0.11 -4.85 7.19 31.12 0.22 -4.63 16 24 H 0.26 14.57 8.32 -92.71 -0.77 13.79 16 25 H 0.05 1.74 7.82 -2.38 -0.02 1.72 16 26 H 0.06 2.19 7.42 -2.39 -0.02 2.17 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.41 6.84 -2.39 -0.02 1.40 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.54 6.98 -2.39 -0.02 1.52 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.70 7.82 -2.39 -0.02 2.68 16 34 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.09 16 36 H 0.05 2.11 8.09 -2.39 -0.02 2.10 16 37 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.05 2.53 7.63 -2.39 -0.02 2.51 16 40 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -70.22 317.48 4.79 -65.43 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 1.01 Total: 16.21 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 3.13 Total: -18.25 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.27 Total: -50.98 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -1.64 Total: -60.36 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.22 4.79 -65.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.832 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds