Wall clock time and date at job start Mon Mar 30 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00416 * 2 1 4 4 H 1.48499 * 109.47238 * 270.00159 * 3 2 1 5 5 H 1.48497 * 109.46908 * 29.99846 * 3 2 1 6 6 H 1.48491 * 109.47295 * 149.99959 * 3 2 1 7 7 C 1.37877 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00057 * 174.95406 * 7 2 1 9 9 C 1.50704 * 120.00024 * 354.96032 * 7 2 1 10 10 O 1.45199 * 112.84998 * 64.95480 * 9 7 2 11 11 C 1.34230 * 116.99951 * 54.50439 * 10 9 7 12 12 O 1.20819 * 120.00345 * 355.18632 * 11 10 9 13 13 C 1.50705 * 119.99718 * 175.18820 * 11 10 9 14 14 C 1.52997 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47484 * 180.02562 * 14 13 11 16 16 H 1.09002 * 110.32858 * 52.74706 * 15 14 13 17 17 C 1.54479 * 110.37527 * 175.00190 * 15 14 13 18 18 C 1.54505 * 104.06189 * 142.80952 * 17 15 14 19 19 C 1.54472 * 104.18873 * 359.93190 * 18 17 15 20 20 O 1.44425 * 110.37203 * 290.38234 * 15 14 13 21 21 C 1.53785 * 113.68732 * 196.21834 * 9 7 2 22 22 C 1.53787 * 87.07871 * 89.12718 * 21 9 7 23 23 C 1.53778 * 113.61305 * 293.75290 * 9 7 2 24 24 H 0.97005 * 119.99691 * 4.99852 * 1 2 3 25 25 H 1.09003 * 109.47080 * 59.99883 * 13 11 10 26 26 H 1.08992 * 109.47071 * 300.00241 * 13 11 10 27 27 H 1.09003 * 109.46985 * 60.00033 * 14 13 11 28 28 H 1.09001 * 109.46772 * 300.00692 * 14 13 11 29 29 H 1.09002 * 110.50972 * 24.16632 * 17 15 14 30 30 H 1.09002 * 110.50834 * 261.45884 * 17 15 14 31 31 H 1.09002 * 110.50998 * 118.65161 * 18 17 15 32 32 H 1.08999 * 110.50871 * 241.21493 * 18 17 15 33 33 H 1.08999 * 110.37302 * 94.91709 * 19 18 17 34 34 H 1.08994 * 110.37537 * 217.25981 * 19 18 17 35 35 H 1.09002 * 113.61584 * 203.67172 * 21 9 7 36 36 H 1.08993 * 113.61770 * 334.58133 * 21 9 7 37 37 H 1.08996 * 113.61506 * 270.88293 * 22 21 9 38 38 H 1.09001 * 113.61045 * 139.97812 * 22 21 9 39 39 H 1.09001 * 113.61082 * 25.35213 * 23 9 7 40 40 H 1.09000 * 113.61408 * 156.16823 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1960 -0.0817 9 6 1.2552 -2.4966 0.1158 10 8 0.3931 -2.7539 -1.0239 11 6 0.9633 -2.7227 -2.2387 12 8 2.1228 -2.4032 -2.3538 13 6 0.1571 -3.0862 -3.4590 14 6 1.0371 -2.9691 -4.7051 15 6 0.2185 -3.3375 -5.9440 16 1 -0.7013 -2.7537 -5.9775 17 6 1.0492 -3.1064 -7.2257 18 6 0.6414 -4.2731 -8.1529 19 6 -0.3864 -5.0743 -7.3235 20 8 -0.0798 -4.7506 -5.9475 21 6 2.1468 -3.6907 0.4957 22 6 1.8614 -3.3354 1.9645 23 6 0.5566 -2.6874 1.4723 24 1 -0.4850 0.8369 -0.0732 25 1 -0.6916 -2.4082 -3.5489 26 1 -0.2043 -4.1101 -3.3639 27 1 1.8861 -3.6468 -4.6153 28 1 1.3982 -1.9450 -4.7998 29 1 2.1154 -3.1503 -7.0030 30 1 0.7921 -2.1495 -7.6801 31 1 0.1827 -3.8931 -9.0658 32 1 1.5064 -4.8923 -8.3905 33 1 -1.4006 -4.7597 -7.5698 34 1 -0.2663 -6.1431 -7.5003 35 1 1.7382 -4.6546 0.1924 36 1 3.1911 -3.5639 0.2108 37 1 2.5702 -2.6233 2.3871 38 1 1.7035 -4.2057 2.6015 39 1 0.3173 -1.7507 1.9757 40 1 -0.2877 -3.3759 1.4357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:51 Heat of formation + Delta-G solvation = -141.758424 kcal Electronic energy + Delta-G solvation = -21143.509935 eV Core-core repulsion = 17922.940487 eV Total energy + Delta-G solvation = -3220.569448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12402 -40.30211 -38.91868 -36.02179 -34.54763 -34.32467 -32.92913 -29.75630 -28.13291 -26.36319 -25.86924 -24.46013 -22.71000 -21.84691 -21.10379 -20.45452 -18.78850 -17.52738 -17.30984 -17.00322 -16.89028 -16.61828 -16.29836 -16.08387 -15.67426 -14.82792 -14.56726 -14.45211 -13.92624 -13.76070 -13.46021 -12.98960 -12.95757 -12.81109 -12.69027 -12.58419 -12.34870 -12.20756 -12.10211 -11.91515 -11.81570 -11.78196 -11.60607 -11.45687 -11.06148 -10.79118 -10.68255 -10.44098 -10.39298 -8.17221 -6.31260 1.34636 1.35920 1.46318 1.81603 2.35263 2.42333 2.97845 3.14375 3.71283 3.75218 3.96095 4.01927 4.04791 4.07541 4.15004 4.17824 4.31857 4.42727 4.47949 4.56355 4.67036 4.75851 4.78174 4.86091 4.88407 4.94632 4.99247 5.07391 5.10657 5.14013 5.19608 5.26188 5.37525 5.46226 5.66360 5.78825 5.96695 6.03377 6.54807 6.69772 7.34028 7.49892 8.87195 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.005003 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.097046 B = 5594.802069 C = 6342.003344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.031 3.969 3 Si 0.947 3.053 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.045 0.955 9 C 0.209 3.791 10 O -0.366 6.366 11 C 0.449 3.551 12 O -0.539 6.539 13 C -0.105 4.105 14 C -0.091 4.091 15 C 0.077 3.923 16 H 0.081 0.919 17 C -0.152 4.152 18 C -0.149 4.149 19 C 0.036 3.964 20 O -0.398 6.398 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.107 4.107 24 H 0.263 0.737 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -7.716 -12.518 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.171 4.171 3 Si 0.772 3.228 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.175 3.825 10 O -0.283 6.283 11 C 0.293 3.707 12 O -0.429 6.429 13 C -0.143 4.143 14 C -0.128 4.128 15 C 0.020 3.980 16 H 0.099 0.901 17 C -0.190 4.190 18 C -0.187 4.187 19 C -0.041 4.041 20 O -0.318 6.318 21 C -0.194 4.194 22 C -0.147 4.147 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.992 -7.640 -12.232 14.559 hybrid contribution 0.550 1.266 -0.101 1.384 sum -1.442 -6.374 -12.333 13.958 Atomic orbital electron populations 1.70115 1.06707 1.27570 1.48623 1.25661 0.95664 1.01934 0.93860 0.85729 0.79187 0.79855 0.78006 1.20956 1.19867 1.19188 1.20989 0.92626 0.90387 1.51191 0.93650 1.21459 0.87660 0.92573 0.80763 1.86410 1.45868 1.79882 1.16090 1.23920 0.86867 0.73820 0.86120 1.90519 1.20087 1.44730 1.87612 1.21378 0.98933 1.04711 0.89234 1.21357 0.97586 1.02308 0.91596 1.23043 0.97602 0.82875 0.94466 0.90093 1.23006 1.00788 1.00442 0.94777 1.22928 0.99922 0.96676 0.99173 1.23657 0.98586 1.01304 0.80508 1.89165 1.90022 1.24427 1.28200 1.23502 0.99508 0.98286 0.98067 1.22428 0.97138 1.00339 0.94809 1.22860 0.96756 0.99450 0.95374 0.92773 0.87931 0.87279 0.91835 0.90725 0.91158 0.88966 0.88567 0.90412 0.91115 0.88089 0.90537 0.93400 0.90700 0.88982 0.93025 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.63 12.54 21.45 0.27 -51.36 16 2 C 0.03 1.75 5.24 84.65 0.44 2.20 16 3 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.51 -29.56 6.29 25.60 0.16 -29.40 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 9 C 0.21 10.93 0.50 -11.01 -0.01 10.93 16 10 O -0.37 -19.21 9.93 -51.42 -0.51 -19.72 16 11 C 0.45 21.73 7.61 71.24 0.54 22.27 16 12 O -0.54 -29.05 14.30 21.98 0.31 -28.73 16 13 C -0.10 -3.78 5.75 29.85 0.17 -3.61 16 14 C -0.09 -2.88 4.13 30.59 0.13 -2.75 16 15 C 0.08 1.90 3.25 31.09 0.10 2.00 16 16 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 17 C -0.15 -2.94 6.63 31.61 0.21 -2.73 16 18 C -0.15 -2.25 7.08 31.61 0.22 -2.03 16 19 C 0.04 0.62 7.65 72.48 0.55 1.18 16 20 O -0.40 -10.42 11.13 -148.98 -1.66 -12.08 16 21 C -0.16 -6.96 7.28 31.12 0.23 -6.73 16 22 C -0.11 -4.35 7.81 31.12 0.24 -4.11 16 23 C -0.11 -4.97 7.19 31.12 0.22 -4.75 16 24 H 0.26 14.45 8.32 -92.70 -0.77 13.68 16 25 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 26 H 0.11 3.62 8.01 -2.39 -0.02 3.60 16 27 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 28 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 29 H 0.07 1.47 7.87 -2.39 -0.02 1.45 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.05 2.22 8.09 -2.39 -0.02 2.20 16 37 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.05 2.62 7.63 -2.39 -0.02 2.60 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -69.06 328.66 4.66 -64.40 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.00 Total: 17.88 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 3.22 Total: -17.54 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.27 Total: -51.36 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.85 Total: -60.54 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.06 4.66 -64.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.354 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds