Wall clock time and date at job start Mon Mar 30 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47267 * 270.00015 * 3 2 1 5 5 H 1.48494 * 109.47436 * 30.00561 * 3 2 1 6 6 H 1.48510 * 109.46789 * 150.00337 * 3 2 1 7 7 C 1.37878 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99531 * 173.74980 * 7 2 1 9 9 C 1.50702 * 120.00208 * 353.75215 * 7 2 1 10 10 O 1.45200 * 112.84708 * 62.61141 * 9 7 2 11 11 C 1.34232 * 117.00095 * 65.19310 * 10 9 7 12 12 O 1.20828 * 120.00036 * 357.69681 * 11 10 9 13 13 C 1.50696 * 120.00074 * 177.70324 * 11 10 9 14 14 C 1.52995 * 109.47236 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47163 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.98740 * 306.07678 * 15 14 13 17 17 C 1.54108 * 109.87546 * 185.00034 * 15 14 13 18 18 C 1.54811 * 104.30052 * 238.47652 * 17 15 14 19 19 C 1.55229 * 101.98879 * 339.26307 * 18 17 15 20 20 O 1.43740 * 109.87982 * 67.16699 * 15 14 13 21 21 C 1.53784 * 113.61225 * 193.80643 * 9 7 2 22 22 C 1.53958 * 87.01598 * 89.23316 * 21 9 7 23 23 C 1.53778 * 113.61332 * 291.41858 * 9 7 2 24 24 H 0.97001 * 119.99450 * 5.01867 * 1 2 3 25 25 H 1.08995 * 109.47466 * 59.99241 * 13 11 10 26 26 H 1.09002 * 109.47093 * 299.99290 * 13 11 10 27 27 H 1.09004 * 109.47527 * 59.99614 * 14 13 11 28 28 H 1.09003 * 109.47390 * 299.99640 * 14 13 11 29 29 H 1.08997 * 110.48982 * 357.22042 * 17 15 14 30 30 H 1.09000 * 110.48524 * 119.73500 * 17 15 14 31 31 H 1.08994 * 110.90692 * 97.38697 * 18 17 15 32 32 H 1.09008 * 110.90682 * 220.98984 * 18 17 15 33 33 H 1.09001 * 110.52079 * 278.37974 * 19 18 17 34 34 H 1.09001 * 110.63999 * 155.44043 * 19 18 17 35 35 H 1.08999 * 113.60740 * 203.74816 * 21 9 7 36 36 H 1.08995 * 113.61656 * 334.65341 * 21 9 7 37 37 H 1.09006 * 113.53260 * 270.80905 * 22 21 9 38 38 H 1.08998 * 113.67004 * 139.93403 * 22 21 9 39 39 H 1.08994 * 113.61893 * 25.34285 * 23 9 7 40 40 H 1.08995 * 113.61546 * 156.25440 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1013 9 6 1.2577 -2.4953 0.1431 10 8 0.3348 -2.7385 -0.9511 11 6 0.8682 -2.9167 -2.1700 12 8 2.0633 -2.8297 -2.3251 13 6 -0.0235 -3.2251 -3.3450 14 6 0.8293 -3.3795 -4.6058 15 6 -0.0761 -3.6933 -5.7986 16 1 -0.7001 -4.5587 -5.5753 17 6 0.7816 -3.9742 -7.0478 18 6 0.3103 -2.9211 -8.0800 19 6 -1.0871 -2.5312 -7.5277 20 8 -0.9045 -2.5568 -6.0958 21 6 2.1656 -3.6949 0.4615 22 6 1.9587 -3.3541 1.9486 23 6 0.6318 -2.6971 1.5332 24 1 -0.4849 0.8369 -0.0735 25 1 -0.7345 -2.4110 -3.4851 26 1 -0.5652 -4.1521 -3.1566 27 1 1.5406 -4.1936 -4.4659 28 1 1.3706 -2.4524 -4.7941 29 1 1.8396 -3.8404 -6.8221 30 1 0.5961 -4.9821 -7.4191 31 1 0.9784 -2.0600 -8.0898 32 1 0.2292 -3.3602 -9.0744 33 1 -1.8359 -3.2622 -7.8325 34 1 -1.3668 -1.5319 -7.8612 35 1 1.7390 -4.6547 0.1701 36 1 3.1935 -3.5668 0.1222 37 1 2.6918 -2.6484 2.3395 38 1 1.8319 -4.2301 2.5847 39 1 0.4233 -1.7647 2.0578 40 1 -0.2148 -3.3836 1.5354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:55 Heat of formation + Delta-G solvation = -124.293279 kcal Electronic energy + Delta-G solvation = -21175.066658 eV Core-core repulsion = 17955.254555 eV Total energy + Delta-G solvation = -3219.812103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58182 -39.06059 -37.07118 -34.11706 -33.16877 -32.23143 -32.06777 -28.58059 -26.13336 -24.55563 -24.37747 -22.77379 -21.86582 -20.82857 -19.44038 -18.49492 -16.88504 -16.41697 -15.90616 -15.64469 -15.08971 -15.04200 -14.78557 -14.42708 -13.85657 -13.67614 -13.11228 -12.78475 -12.72878 -12.18177 -11.82742 -11.60481 -11.45359 -11.35265 -11.06712 -10.98278 -10.87898 -10.82562 -10.71839 -10.53128 -10.32120 -10.23776 -9.83138 -9.75812 -9.62577 -9.16555 -8.71835 -8.47794 -8.44039 -6.04913 -4.16513 3.30110 3.36504 3.40495 3.64332 3.87668 4.11624 4.40094 4.50798 4.73851 4.85763 5.05051 5.18275 5.25818 5.37957 5.46832 5.58626 5.66211 5.67701 5.76030 5.78848 5.82127 5.88791 5.94877 6.01578 6.07694 6.31047 6.43677 6.51362 6.55284 6.60968 6.68381 6.95781 6.97237 7.14851 7.34301 7.61056 7.85258 8.05244 8.45183 8.86965 9.34927 9.53976 10.99607 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.005236 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.324657 B = 5346.657138 C = 6100.594354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.240 3.760 10 O -0.345 6.345 11 C 0.461 3.539 12 O -0.518 6.518 13 C -0.115 4.115 14 C -0.102 4.102 15 C 0.076 3.924 16 H 0.068 0.932 17 C -0.153 4.153 18 C -0.156 4.156 19 C 0.045 3.955 20 O -0.369 6.369 21 C -0.158 4.158 22 C -0.132 4.132 23 C -0.109 4.109 24 H 0.262 0.738 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -7.788 -11.283 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.206 3.794 10 O -0.261 6.261 11 C 0.303 3.697 12 O -0.408 6.408 13 C -0.153 4.153 14 C -0.140 4.140 15 C 0.019 3.981 16 H 0.086 0.914 17 C -0.190 4.190 18 C -0.194 4.194 19 C -0.032 4.032 20 O -0.288 6.288 21 C -0.196 4.196 22 C -0.169 4.169 23 C -0.146 4.146 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.855 -7.487 -11.030 13.460 hybrid contribution 0.522 0.830 -0.304 1.027 sum -1.333 -6.657 -11.334 13.212 Atomic orbital electron populations 1.70043 1.05818 1.26967 1.46951 1.25072 0.94861 0.99263 0.93863 0.86586 0.80055 0.83128 0.78331 1.20536 1.21013 1.19554 1.20924 0.93549 0.88792 1.51753 0.91539 1.21140 0.85224 0.92138 0.80854 1.86477 1.44013 1.79093 1.16551 1.22936 0.87874 0.73802 0.85056 1.90530 1.17092 1.47394 1.85792 1.21289 0.98695 1.04032 0.91318 1.21562 0.96903 1.03842 0.91649 1.22834 0.91406 0.89021 0.94864 0.91386 1.23008 1.01478 0.99451 0.95100 1.23170 0.97641 0.99564 0.98976 1.23560 0.96094 1.01815 0.81730 1.88965 1.70199 1.47874 1.21732 1.23544 1.01223 0.98547 0.96301 1.22571 0.99289 0.99356 0.95718 1.22898 0.94995 0.99819 0.96936 0.92783 0.88124 0.89474 0.90195 0.90299 0.90048 0.90812 0.90456 0.90509 0.92458 0.89180 0.92356 0.91897 0.90279 0.93070 0.90807 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 12.78 55.43 0.71 -24.22 16 2 C 0.08 2.12 5.29 -17.82 -0.09 2.03 16 3 Si 0.89 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.55 7.08 -34.44 -0.24 -14.79 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.24 6.25 0.47 -90.96 -0.04 6.20 16 10 O -0.35 -9.04 9.76 -39.26 -0.38 -9.42 16 11 C 0.46 10.97 7.52 36.00 0.27 11.24 16 12 O -0.52 -13.41 14.43 -18.75 -0.27 -13.68 16 13 C -0.12 -2.11 5.73 -27.89 -0.16 -2.27 16 14 C -0.10 -1.61 3.99 -26.73 -0.11 -1.72 16 15 C 0.08 0.98 3.41 -26.15 -0.09 0.89 16 16 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.15 -1.56 6.64 -25.20 -0.17 -1.73 16 18 C -0.16 -1.46 7.17 -24.60 -0.18 -1.63 16 19 C 0.04 0.47 7.72 38.34 0.30 0.77 16 20 O -0.37 -5.39 10.84 -35.23 -0.38 -5.77 16 21 C -0.16 -3.59 6.56 -25.82 -0.17 -3.76 16 22 C -0.13 -2.72 7.81 -25.82 -0.20 -2.92 16 23 C -0.11 -2.55 7.28 -25.92 -0.19 -2.74 16 24 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 25 H 0.10 1.93 7.91 -51.93 -0.41 1.51 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 28 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 29 H 0.08 0.85 7.70 -51.93 -0.40 0.45 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.47 8.08 -51.93 -0.42 1.05 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.85 7.97 -51.93 -0.41 1.44 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -32.16 328.90 -8.15 -40.30 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.68 Total: 1.47 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.07 Total: -10.44 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.71 Total: -24.22 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.04 Total: -28.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.16 -8.15 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.990 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds