Wall clock time and date at job start Mon Mar 30 2020 07:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99865 * 2 1 4 4 C 1.53003 * 109.46942 * 125.00421 * 3 2 1 5 5 O 1.42898 * 109.47574 * 180.02562 * 4 3 2 6 6 C 1.42898 * 114.00327 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47061 * 330.00243 * 6 5 4 8 8 C 1.53003 * 109.46937 * 89.99878 * 6 5 4 9 9 C 1.50701 * 109.47211 * 209.99441 * 6 5 4 10 10 O 1.20821 * 119.99940 * 355.00433 * 9 6 5 11 11 O 1.34225 * 119.99896 * 174.99726 * 9 6 5 12 12 C 1.45199 * 116.99864 * 177.70687 * 11 9 6 13 13 C 1.50708 * 112.84741 * 65.19406 * 12 11 9 14 14 H 1.07995 * 120.00064 * 242.61137 * 13 12 11 15 15 C 1.37878 * 119.99498 * 62.61326 * 13 12 11 16 16 N 1.31511 * 120.00830 * 353.74961 * 15 13 12 17 17 Si 1.86801 * 119.99590 * 173.75290 * 15 13 12 18 18 H 1.48505 * 109.47341 * 89.99747 * 17 15 13 19 19 H 1.48494 * 109.47441 * 209.99655 * 17 15 13 20 20 H 1.48506 * 109.47021 * 329.99854 * 17 15 13 21 21 C 1.53779 * 113.61887 * 293.99784 * 12 11 9 22 22 C 1.53955 * 87.01976 * 220.04712 * 21 12 11 23 23 C 1.53779 * 87.11100 * 25.36150 * 22 21 12 24 24 H 1.08007 * 119.99879 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00324 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99918 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47270 * 5.00687 * 3 2 1 28 28 H 1.08993 * 109.47664 * 244.99985 * 3 2 1 29 29 H 1.08999 * 109.46921 * 60.00052 * 4 3 2 30 30 H 1.09003 * 109.47115 * 300.00189 * 4 3 2 31 31 H 1.08994 * 109.47352 * 179.97438 * 8 6 5 32 32 H 1.09007 * 109.47150 * 300.00153 * 8 6 5 33 33 H 1.09000 * 109.47427 * 59.99698 * 8 6 5 34 34 H 0.96997 * 120.00507 * 185.02972 * 16 15 13 35 35 H 1.08998 * 113.61103 * 334.56662 * 21 12 11 36 36 H 1.08998 * 113.61711 * 105.46989 * 21 12 11 37 37 H 1.09001 * 113.53707 * 270.80790 * 22 21 12 38 38 H 1.09002 * 113.74093 * 139.94425 * 22 21 12 39 39 H 1.09003 * 113.61541 * 220.09085 * 23 22 21 40 40 H 1.08997 * 113.69330 * 89.20049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5708 1.1821 6 6 4.6878 2.6999 2.2518 7 1 4.3353 2.1350 3.1147 8 6 6.0466 2.1556 1.8064 9 6 4.8269 4.1532 2.6254 10 8 4.2580 5.0004 1.9784 11 8 5.5827 4.5065 3.6769 12 6 5.7126 5.9271 3.9476 13 6 4.4083 6.5686 4.3459 14 1 3.9782 7.3448 3.7304 15 6 3.7643 6.1645 5.4961 16 7 4.2212 5.1381 6.1797 17 14 2.2426 7.0749 6.0834 18 1 1.0330 6.4550 5.4850 19 1 2.1586 6.9952 7.5639 20 1 2.3263 8.4983 5.6683 21 6 6.4681 6.6967 2.8514 22 6 7.1447 7.4880 3.9855 23 6 6.8804 6.2708 4.8873 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0897 28 1 2.6212 1.4027 -0.9313 29 1 3.7400 0.5065 1.0919 30 1 2.4773 1.2354 2.1130 31 1 6.7627 2.2545 2.6221 32 1 5.9461 1.1044 1.5361 33 1 6.3992 2.7204 0.9434 34 1 3.7281 4.8081 6.9470 35 1 7.1584 6.0766 2.2795 36 1 5.8207 7.3046 2.2194 37 1 6.5932 8.3799 4.2830 38 1 8.2034 7.6826 3.8138 39 1 6.5652 6.5355 5.8967 40 1 7.6829 5.5335 4.8742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:39 Heat of formation + Delta-G solvation = -96.083407 kcal Electronic energy + Delta-G solvation = -21153.590914 eV Core-core repulsion = 17935.002083 eV Total energy + Delta-G solvation = -3218.588831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.43912 -38.13022 -36.72091 -35.05084 -34.08433 -32.29294 -31.33316 -28.92402 -26.22164 -24.56452 -24.47509 -23.09061 -22.43053 -20.15794 -19.59440 -18.52809 -17.05762 -16.32516 -15.97849 -15.84435 -15.13689 -14.80905 -14.63858 -14.27356 -13.85966 -13.75544 -13.38823 -12.96625 -12.57246 -12.27946 -12.01664 -11.62778 -11.53881 -11.46278 -11.20567 -11.05271 -11.03591 -10.90377 -10.71079 -10.42284 -10.27437 -9.88106 -9.79819 -9.56587 -9.48721 -9.06738 -8.74533 -8.50918 -8.48297 -6.10786 -4.22042 2.10886 3.25685 3.33211 3.38086 3.40514 3.54165 4.35286 4.40959 4.88796 5.00665 5.16426 5.18167 5.26222 5.33404 5.44126 5.46892 5.65661 5.74420 5.77602 5.85005 5.86694 5.92149 5.97152 6.06666 6.19669 6.32935 6.46551 6.48592 6.52431 6.63119 6.65059 6.93951 7.11788 7.28513 7.35956 7.58319 7.80075 7.96547 8.37949 8.82225 9.28242 9.48365 10.93666 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.005624 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.150079 B = 4977.674888 C = 5990.069674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C -0.093 4.093 4 C 0.065 3.935 5 O -0.361 6.361 6 C 0.092 3.908 7 H 0.089 0.911 8 C -0.163 4.163 9 C 0.462 3.538 10 O -0.493 6.493 11 O -0.343 6.343 12 C 0.241 3.759 13 C -0.513 4.513 14 H 0.068 0.932 15 C 0.076 3.924 16 N -0.863 5.863 17 Si 0.892 3.108 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.159 4.159 22 C -0.132 4.132 23 C -0.107 4.107 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -9.120 -7.184 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.012 4.012 5 O -0.279 6.279 6 C 0.033 3.967 7 H 0.106 0.894 8 C -0.221 4.221 9 C 0.303 3.697 10 O -0.380 6.380 11 O -0.259 6.259 12 C 0.208 3.792 13 C -0.550 4.550 14 H 0.086 0.914 15 C -0.130 4.130 16 N -0.499 5.499 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.197 4.197 22 C -0.169 4.169 23 C -0.145 4.145 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.377 -8.737 -7.278 11.377 hybrid contribution -0.984 0.108 0.545 1.130 sum -0.607 -8.629 -6.733 10.962 Atomic orbital electron populations 1.23901 0.95942 1.01984 1.00940 1.22818 0.96009 0.98028 1.00064 1.20644 0.98084 0.95811 0.98517 1.22483 0.93773 0.86496 0.98432 1.87979 1.54674 1.37124 1.48171 1.21488 0.90752 0.93630 0.90824 0.89357 1.22149 0.96047 1.00911 1.02986 1.22476 0.77831 0.89921 0.79522 1.90559 1.43482 1.52171 1.51831 1.86460 1.62309 1.33362 1.43778 1.21201 0.93848 0.73616 0.90576 1.20972 1.06120 1.21174 1.06721 0.91395 1.25069 0.97343 0.94847 0.95759 1.70032 1.37946 1.23118 1.18831 0.86575 0.83074 0.80688 0.77730 1.20503 1.20977 1.19449 1.23554 0.99108 0.99628 0.97397 1.22569 0.98312 0.97906 0.98121 1.22898 0.96765 0.95314 0.99514 0.88445 0.88355 0.87274 0.90391 0.90090 0.93265 0.93081 0.90178 0.91914 0.91618 0.92776 0.92227 0.91808 0.90238 0.92972 0.90744 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 14.32 29.01 0.42 -1.41 16 2 C -0.15 -1.53 9.52 -36.03 -0.34 -1.87 16 3 C -0.09 -1.14 6.03 -27.88 -0.17 -1.31 16 4 C 0.06 0.90 5.73 37.16 0.21 1.12 16 5 O -0.36 -6.67 9.53 -55.14 -0.53 -7.19 16 6 C 0.09 1.73 3.24 -27.88 -0.09 1.64 16 7 H 0.09 1.57 7.79 -51.93 -0.40 1.16 16 8 C -0.16 -2.43 9.50 37.16 0.35 -2.08 16 9 C 0.46 11.18 6.85 36.01 0.25 11.42 16 10 O -0.49 -13.43 14.95 -25.46 -0.38 -13.81 16 11 O -0.34 -8.73 9.76 -39.24 -0.38 -9.11 16 12 C 0.24 6.16 0.47 -90.96 -0.04 6.12 16 13 C -0.51 -14.40 7.08 -34.44 -0.24 -14.64 16 14 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 15 C 0.08 2.10 5.29 -17.82 -0.09 2.00 16 16 N -0.86 -24.34 12.78 55.43 0.71 -23.64 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.16 -3.59 6.56 -25.83 -0.17 -3.75 16 22 C -0.13 -2.67 7.81 -25.83 -0.20 -2.87 16 23 C -0.11 -2.45 7.28 -25.92 -0.19 -2.64 16 24 H 0.10 0.77 8.06 -52.48 -0.42 0.34 16 25 H 0.10 0.95 7.84 -52.49 -0.41 0.54 16 26 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.08 1.04 7.79 -51.93 -0.40 0.63 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.75 7.87 -51.92 -0.41 0.34 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.49 8.09 -51.93 -0.42 1.07 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.82 7.97 -51.93 -0.41 1.41 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -31.76 340.10 -7.43 -39.19 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.64 Total: 1.18 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.31 Total: -8.27 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.71 Total: -23.64 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.29 Total: -30.11 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.76 -7.43 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.889 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds