Wall clock time and date at job start Mon Mar 30 2020 07:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99865 * 2 1 4 4 C 1.53003 * 109.46942 * 125.00421 * 3 2 1 5 5 O 1.42898 * 109.47574 * 180.02562 * 4 3 2 6 6 C 1.42898 * 114.00327 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47061 * 330.00243 * 6 5 4 8 8 C 1.53003 * 109.46937 * 89.99878 * 6 5 4 9 9 C 1.50701 * 109.47211 * 209.99441 * 6 5 4 10 10 O 1.20821 * 119.99940 * 355.00433 * 9 6 5 11 11 O 1.34225 * 119.99896 * 174.99726 * 9 6 5 12 12 C 1.45199 * 116.99864 * 177.70687 * 11 9 6 13 13 C 1.50708 * 112.84741 * 65.19406 * 12 11 9 14 14 H 1.07995 * 120.00064 * 242.61137 * 13 12 11 15 15 C 1.37878 * 119.99498 * 62.61326 * 13 12 11 16 16 N 1.31511 * 120.00830 * 353.74961 * 15 13 12 17 17 Si 1.86801 * 119.99590 * 173.75290 * 15 13 12 18 18 H 1.48505 * 109.47341 * 89.99747 * 17 15 13 19 19 H 1.48494 * 109.47441 * 209.99655 * 17 15 13 20 20 H 1.48506 * 109.47021 * 329.99854 * 17 15 13 21 21 C 1.53779 * 113.61887 * 293.99784 * 12 11 9 22 22 C 1.53955 * 87.01976 * 220.04712 * 21 12 11 23 23 C 1.53779 * 87.11100 * 25.36150 * 22 21 12 24 24 H 1.08007 * 119.99879 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00324 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99918 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47270 * 5.00687 * 3 2 1 28 28 H 1.08993 * 109.47664 * 244.99985 * 3 2 1 29 29 H 1.08999 * 109.46921 * 60.00052 * 4 3 2 30 30 H 1.09003 * 109.47115 * 300.00189 * 4 3 2 31 31 H 1.08994 * 109.47352 * 179.97438 * 8 6 5 32 32 H 1.09007 * 109.47150 * 300.00153 * 8 6 5 33 33 H 1.09000 * 109.47427 * 59.99698 * 8 6 5 34 34 H 0.96997 * 120.00507 * 185.02972 * 16 15 13 35 35 H 1.08998 * 113.61103 * 334.56662 * 21 12 11 36 36 H 1.08998 * 113.61711 * 105.46989 * 21 12 11 37 37 H 1.09001 * 113.53707 * 270.80790 * 22 21 12 38 38 H 1.09002 * 113.74093 * 139.94425 * 22 21 12 39 39 H 1.09003 * 113.61541 * 220.09085 * 23 22 21 40 40 H 1.08997 * 113.69330 * 89.20049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5708 1.1821 6 6 4.6878 2.6999 2.2518 7 1 4.3353 2.1350 3.1147 8 6 6.0466 2.1556 1.8064 9 6 4.8269 4.1532 2.6254 10 8 4.2580 5.0004 1.9784 11 8 5.5827 4.5065 3.6769 12 6 5.7126 5.9271 3.9476 13 6 4.4083 6.5686 4.3459 14 1 3.9782 7.3448 3.7304 15 6 3.7643 6.1645 5.4961 16 7 4.2212 5.1381 6.1797 17 14 2.2426 7.0749 6.0834 18 1 1.0330 6.4550 5.4850 19 1 2.1586 6.9952 7.5639 20 1 2.3263 8.4983 5.6683 21 6 6.4681 6.6967 2.8514 22 6 7.1447 7.4880 3.9855 23 6 6.8804 6.2708 4.8873 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0897 28 1 2.6212 1.4027 -0.9313 29 1 3.7400 0.5065 1.0919 30 1 2.4773 1.2354 2.1130 31 1 6.7627 2.2545 2.6221 32 1 5.9461 1.1044 1.5361 33 1 6.3992 2.7204 0.9434 34 1 3.7281 4.8081 6.9470 35 1 7.1584 6.0766 2.2795 36 1 5.8207 7.3046 2.2194 37 1 6.5932 8.3799 4.2830 38 1 8.2034 7.6826 3.8138 39 1 6.5652 6.5355 5.8967 40 1 7.6829 5.5335 4.8742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:38 Heat of formation + Delta-G solvation = -113.462678 kcal Electronic energy + Delta-G solvation = -21154.344535 eV Core-core repulsion = 17935.002083 eV Total energy + Delta-G solvation = -3219.342453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26312 -39.64055 -38.42321 -36.08026 -35.95973 -34.39787 -32.61783 -29.94634 -28.24476 -26.37707 -26.07295 -24.53678 -23.79151 -21.62551 -20.64498 -20.46127 -18.89684 -17.78601 -17.65154 -17.11812 -16.84161 -16.79447 -16.19322 -15.66214 -15.56142 -15.24928 -14.55084 -14.44490 -14.07848 -13.64783 -13.51074 -13.23526 -13.00165 -12.94304 -12.89091 -12.71109 -12.56978 -12.28269 -12.12070 -12.03466 -11.97247 -11.79789 -11.64925 -11.10754 -10.81482 -10.73578 -10.44817 -10.38738 -10.27282 -8.21681 -6.38937 1.30913 1.33465 1.34595 1.44864 1.67226 1.90792 2.34139 2.92887 3.14111 3.82346 3.93037 3.98629 4.00001 4.05689 4.12640 4.15750 4.26901 4.34819 4.41911 4.44126 4.58623 4.70976 4.80900 4.85118 4.89022 4.92996 5.01346 5.09331 5.15119 5.18548 5.36106 5.42917 5.61465 5.70224 5.75342 5.85856 5.99091 6.12131 6.42054 6.65484 7.28127 7.42684 8.82231 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.005624 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.150079 B = 4977.674888 C = 5990.069674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.091 4.091 4 C 0.059 3.941 5 O -0.388 6.388 6 C 0.098 3.902 7 H 0.097 0.903 8 C -0.153 4.153 9 C 0.450 3.550 10 O -0.535 6.535 11 O -0.351 6.351 12 C 0.213 3.787 13 C -0.532 4.532 14 H 0.044 0.956 15 C 0.035 3.965 16 N -0.884 5.884 17 Si 0.946 3.054 18 H -0.285 1.285 19 H -0.269 1.269 20 H -0.267 1.267 21 C -0.154 4.154 22 C -0.111 4.111 23 C -0.103 4.103 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.132 0.868 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 -10.591 -7.362 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.174 4.174 3 C -0.129 4.129 4 C -0.017 4.017 5 O -0.308 6.308 6 C 0.039 3.961 7 H 0.115 0.885 8 C -0.210 4.210 9 C 0.293 3.707 10 O -0.425 6.425 11 O -0.267 6.267 12 C 0.180 3.820 13 C -0.569 4.569 14 H 0.063 0.937 15 C -0.168 4.168 16 N -0.521 5.521 17 Si 0.771 3.229 18 H -0.211 1.211 19 H -0.194 1.194 20 H -0.191 1.191 21 C -0.192 4.192 22 C -0.148 4.148 23 C -0.141 4.141 24 H 0.136 0.864 25 H 0.108 0.892 26 H 0.149 0.851 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.057 -10.217 -7.449 12.689 hybrid contribution -1.251 0.536 0.545 1.466 sum -0.194 -9.682 -6.904 11.893 Atomic orbital electron populations 1.24089 0.95999 1.02670 0.99983 1.22843 0.96140 0.97613 1.00847 1.20634 0.97576 0.96542 0.98120 1.22769 0.94406 0.85656 0.98886 1.87951 1.55192 1.39798 1.47839 1.21536 0.93227 0.89686 0.91632 0.88483 1.22118 0.93349 1.02807 1.02764 1.23663 0.76464 0.92201 0.78420 1.90525 1.45023 1.54015 1.52974 1.86440 1.62619 1.33240 1.44422 1.21469 0.93797 0.73900 0.92872 1.21074 1.07685 1.21285 1.06896 0.93727 1.25683 0.99840 0.95520 0.95773 1.70093 1.38951 1.23888 1.19138 0.85754 0.79637 0.79645 0.77906 1.21088 1.19414 1.19095 1.23496 0.98905 0.99547 0.97242 1.22488 1.00497 0.96411 0.95433 1.22866 0.96161 0.96883 0.98201 0.86354 0.89176 0.85057 0.92483 0.89718 0.90080 0.93556 0.89890 0.88142 0.92061 0.92525 0.90708 0.93765 0.90769 0.88810 0.92935 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 14.32 67.78 0.97 -2.35 16 2 C -0.16 -2.86 9.52 25.65 0.24 -2.61 16 3 C -0.09 -2.16 6.03 29.85 0.18 -1.98 16 4 C 0.06 1.55 5.73 71.98 0.41 1.96 16 5 O -0.39 -14.19 9.53 -129.95 -1.24 -15.43 16 6 C 0.10 3.62 3.24 29.85 0.10 3.72 16 7 H 0.10 3.36 7.79 -2.39 -0.02 3.34 16 8 C -0.15 -4.22 9.50 71.98 0.68 -3.53 16 9 C 0.45 22.07 6.85 71.24 0.49 22.56 16 10 O -0.54 -30.14 14.95 28.40 0.42 -29.72 16 11 O -0.35 -18.04 9.76 -51.37 -0.50 -18.54 16 12 C 0.21 11.03 0.47 -11.01 -0.01 11.02 16 13 C -0.53 -30.68 7.08 25.60 0.18 -30.50 16 14 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.04 1.99 5.29 84.66 0.45 2.44 16 16 N -0.88 -50.34 12.78 21.45 0.27 -50.07 16 17 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 18 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.15 -6.93 6.56 31.18 0.20 -6.72 16 22 C -0.11 -4.33 7.81 31.18 0.24 -4.09 16 23 C -0.10 -4.67 7.28 31.12 0.23 -4.44 16 24 H 0.12 1.56 8.06 -2.91 -0.02 1.54 16 25 H 0.09 1.69 7.84 -2.91 -0.02 1.67 16 26 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.06 1.55 7.79 -2.39 -0.02 1.53 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.62 7.87 -2.39 -0.02 1.60 16 30 H 0.05 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.10 2.01 7.87 -2.38 -0.02 1.99 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.27 14.28 8.32 -92.71 -0.77 13.51 16 35 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.04 2.11 8.09 -2.39 -0.02 2.10 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.05 2.57 7.97 -2.39 -0.02 2.55 16 40 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -70.38 340.10 6.35 -64.03 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.99 Total: 17.45 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 4.37 Total: -14.54 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.27 Total: -50.07 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -1.31 Total: -63.68 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.38 6.35 -64.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.436 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds