Wall clock time and date at job start Mon Mar 30 2020 07:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.33090 * 2 1 4 4 C 1.54487 * 110.46425 * 237.68540 * 2 1 3 5 5 C 1.54504 * 104.06045 * 217.14268 * 4 2 1 6 6 H 1.08997 * 110.51295 * 118.64847 * 5 4 2 7 7 C 1.53006 * 110.51248 * 241.35733 * 5 4 2 8 8 C 1.54482 * 104.06718 * 0.02562 * 5 4 2 9 9 H 1.08999 * 110.37192 * 265.14850 * 8 5 4 10 10 C 1.50697 * 110.46862 * 142.85775 * 8 5 4 11 11 O 1.20820 * 120.00159 * 249.38087 * 10 8 5 12 12 O 1.34231 * 120.00070 * 69.37565 * 10 8 5 13 13 C 1.45204 * 116.99870 * 183.53526 * 12 10 8 14 14 C 1.50690 * 112.85073 * 54.18816 * 13 12 10 15 15 H 1.08002 * 120.00302 * 242.03384 * 14 13 12 16 16 C 1.37878 * 120.00249 * 62.04149 * 14 13 12 17 17 N 1.31521 * 119.99943 * 186.86546 * 16 14 13 18 18 Si 1.86802 * 119.99951 * 6.86257 * 16 14 13 19 19 H 1.48492 * 109.46958 * 93.73064 * 18 16 14 20 20 H 1.48503 * 109.46852 * 213.73132 * 18 16 14 21 21 H 1.48493 * 109.46954 * 333.73016 * 18 16 14 22 22 C 1.53778 * 113.61225 * 282.87802 * 13 12 10 23 23 C 1.53782 * 87.08212 * 220.02438 * 22 13 12 24 24 C 1.53780 * 87.07989 * 25.43266 * 23 22 13 25 25 O 1.44427 * 110.37063 * 122.25285 * 2 1 3 26 26 H 1.09001 * 109.47007 * 299.19673 * 1 2 3 27 27 H 1.08997 * 109.47439 * 59.20109 * 1 2 3 28 28 H 1.09006 * 109.47495 * 179.20315 * 1 2 3 29 29 H 1.08997 * 110.50990 * 335.78915 * 4 2 1 30 30 H 1.08994 * 110.50601 * 98.36157 * 4 2 1 31 31 H 1.08994 * 109.47534 * 174.64652 * 7 5 4 32 32 H 1.09005 * 109.46651 * 294.64771 * 7 5 4 33 33 H 1.08999 * 109.47144 * 54.64050 * 7 5 4 34 34 H 0.96996 * 120.00072 * 179.97438 * 17 16 14 35 35 H 1.09005 * 113.61753 * 334.56798 * 22 13 12 36 36 H 1.08996 * 113.61332 * 105.46956 * 22 13 12 37 37 H 1.08998 * 113.61292 * 270.88537 * 23 22 13 38 38 H 1.08997 * 113.61912 * 139.98300 * 23 22 13 39 39 H 1.09004 * 113.61554 * 220.01843 * 24 23 22 40 40 H 1.08997 * 113.69000 * 89.12987 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7737 -1.2232 5 6 3.3206 -1.5032 -0.6837 6 1 3.2002 -2.5830 -0.7707 7 6 4.5744 -1.0406 -1.4287 8 6 3.3879 -1.0846 0.8018 9 1 4.0514 -0.2287 0.9252 10 6 3.8554 -2.2366 1.6534 11 8 3.0888 -2.7729 2.4179 12 8 5.1236 -2.6671 1.5625 13 6 5.4831 -3.8304 2.3535 14 6 4.5796 -5.0102 2.1034 15 1 3.9829 -5.4136 2.9081 16 6 4.5147 -5.5747 0.8472 17 7 3.6301 -6.5143 0.5934 18 14 5.6833 -5.0051 -0.4943 19 1 6.8776 -5.8872 -0.5177 20 1 4.9957 -5.0677 -1.8091 21 1 6.1053 -3.6076 -0.2225 22 6 5.6953 -3.5197 3.8446 23 6 6.8874 -4.4899 3.7964 24 6 6.9801 -4.1772 2.2936 25 8 2.0327 -0.7225 1.1450 26 1 -0.3633 0.5013 0.8971 27 1 -0.3634 0.5262 -0.8827 28 1 -0.3634 -1.0276 -0.0143 29 1 1.3313 -1.4928 -1.5769 30 1 2.3427 -0.0836 -2.0216 31 1 5.4554 -1.4926 -0.9732 32 1 4.5091 -1.3447 -2.4735 33 1 4.6518 0.0451 -1.3706 34 1 3.5842 -6.9112 -0.2905 35 1 5.9813 -2.4860 4.0389 36 1 4.8798 -3.8612 4.4821 37 1 6.6178 -5.5239 4.0114 38 1 7.7511 -4.1493 4.3674 39 1 7.2019 -5.0497 1.6789 40 1 7.6172 -3.3236 2.0624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:17 Heat of formation + Delta-G solvation = -108.049075 kcal Electronic energy + Delta-G solvation = -22307.340304 eV Core-core repulsion = 19088.232603 eV Total energy + Delta-G solvation = -3219.107701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11385 -38.99701 -37.02260 -34.45676 -33.38726 -32.34114 -31.97297 -27.28719 -26.69276 -26.21366 -24.93482 -22.94759 -21.61401 -20.71378 -19.90271 -18.56903 -17.25485 -16.32421 -15.94370 -15.69904 -15.30220 -14.98219 -14.35564 -14.26851 -13.80208 -13.64301 -13.02066 -12.89996 -12.60673 -12.53888 -12.27259 -11.86985 -11.73381 -11.65464 -11.24822 -11.22943 -11.00073 -10.86368 -10.62858 -10.53996 -10.42986 -10.15979 -9.99055 -9.78951 -9.68104 -9.26129 -8.99047 -8.71864 -8.51211 -6.19593 -4.23714 3.17806 3.24145 3.32881 3.40026 3.48368 4.34162 4.36630 4.63446 4.84420 4.96700 5.07759 5.14598 5.21604 5.39144 5.48088 5.50063 5.51386 5.64078 5.69386 5.71065 5.79686 5.86332 5.90184 5.97820 6.10242 6.16447 6.21924 6.33676 6.37940 6.39145 6.40376 6.64850 6.83950 6.94304 6.96274 7.27159 7.47689 7.84070 8.42184 8.88840 9.06724 9.41079 10.91059 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.007961 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.527750 B = 3516.331436 C = 3893.961735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.146 4.146 5 C -0.114 4.114 6 H 0.090 0.910 7 C -0.145 4.145 8 C 0.085 3.915 9 H 0.093 0.907 10 C 0.461 3.539 11 O -0.465 6.465 12 O -0.367 6.367 13 C 0.200 3.800 14 C -0.501 4.501 15 H 0.085 0.915 16 C 0.082 3.918 17 N -0.878 5.878 18 Si 0.854 3.146 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.229 1.229 22 C -0.148 4.148 23 C -0.124 4.124 24 C -0.131 4.131 25 O -0.343 6.343 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.266 0.734 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 12.960 -4.210 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 H 0.086 0.914 4 C -0.184 4.184 5 C -0.133 4.133 6 H 0.109 0.891 7 C -0.203 4.203 8 C 0.026 3.974 9 H 0.111 0.889 10 C 0.300 3.700 11 O -0.349 6.349 12 O -0.286 6.286 13 C 0.166 3.834 14 C -0.538 4.538 15 H 0.103 0.897 16 C -0.123 4.123 17 N -0.514 5.514 18 Si 0.680 3.320 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.152 1.152 22 C -0.186 4.186 23 C -0.161 4.161 24 C -0.169 4.169 25 O -0.262 6.262 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.210 12.591 -3.860 13.225 hybrid contribution 0.536 0.041 -0.985 1.122 sum 1.746 12.632 -4.845 13.642 Atomic orbital electron populations 1.21788 0.93060 1.03277 1.02124 1.23017 0.95508 0.95180 0.85285 0.91361 1.23104 0.97436 0.99671 0.98153 1.22403 0.95795 1.02338 0.92801 0.89120 1.21864 0.97425 1.00846 1.00133 1.22517 0.85981 0.95628 0.93304 0.88898 1.22312 0.81991 0.83594 0.82121 1.90635 1.54829 1.54143 1.35302 1.86507 1.28245 1.47601 1.66252 1.21666 0.92195 0.82978 0.86522 1.20789 1.24526 1.10593 0.97876 0.89721 1.24990 0.94769 0.94241 0.98272 1.69940 1.33046 1.26201 1.22224 0.87237 0.81562 0.82079 0.81142 1.20564 1.21670 1.15180 1.23356 0.98348 0.97929 0.98957 1.22470 0.97473 1.00367 0.95813 1.23275 0.96390 1.00295 0.96894 1.89251 1.25366 1.74223 1.37322 0.91830 0.91277 0.91461 0.90260 0.90223 0.91007 0.92183 0.92451 0.92445 0.91685 0.91281 0.89580 0.92400 0.91387 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.53 37.16 0.35 -1.36 16 2 C 0.07 0.93 3.92 -25.95 -0.10 0.83 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.15 -1.94 6.28 -25.16 -0.16 -2.09 16 5 C -0.11 -1.91 3.25 -89.05 -0.29 -2.20 16 6 H 0.09 1.82 7.87 -51.93 -0.41 1.41 16 7 C -0.15 -2.02 8.95 37.16 0.33 -1.69 16 8 C 0.09 1.58 3.37 -27.11 -0.09 1.49 16 9 H 0.09 1.46 7.87 -51.93 -0.41 1.05 16 10 C 0.46 10.83 6.79 36.00 0.24 11.08 16 11 O -0.47 -12.77 14.97 -25.26 -0.38 -13.15 16 12 O -0.37 -8.59 7.91 -39.26 -0.31 -8.90 16 13 C 0.20 4.82 0.25 -90.97 -0.02 4.80 16 14 C -0.50 -14.28 7.07 -34.44 -0.24 -14.53 16 15 H 0.08 2.70 8.05 -52.49 -0.42 2.28 16 16 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 17 N -0.88 -26.85 13.96 55.43 0.77 -26.08 16 18 Si 0.85 20.92 24.77 -169.99 -4.21 16.71 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.23 -5.24 5.29 56.52 0.30 -4.94 16 22 C -0.15 -3.16 7.14 -25.92 -0.18 -3.34 16 23 C -0.12 -2.35 7.81 -25.92 -0.20 -2.55 16 24 C -0.13 -2.73 6.12 -25.92 -0.16 -2.89 16 25 O -0.34 -6.47 10.61 -54.44 -0.58 -7.05 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 30 H 0.08 0.83 7.74 -51.93 -0.40 0.43 16 31 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.56 8.09 -51.93 -0.42 1.14 16 37 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.48 5.98 -51.93 -0.31 1.17 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -33.22 318.71 -7.17 -40.39 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.66 Total: 3.46 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.62 Total: -10.19 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.77 Total: -26.08 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.27 Total: -29.10 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.21 Total: 16.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.22 -7.17 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.660 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds