Wall clock time and date at job start Mon Mar 30 2020 07:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.33090 * 2 1 4 4 C 1.54487 * 110.46425 * 237.68540 * 2 1 3 5 5 C 1.54504 * 104.06045 * 217.14268 * 4 2 1 6 6 H 1.08997 * 110.51295 * 118.64847 * 5 4 2 7 7 C 1.53006 * 110.51248 * 241.35733 * 5 4 2 8 8 C 1.54482 * 104.06718 * 0.02562 * 5 4 2 9 9 H 1.08999 * 110.37192 * 265.14850 * 8 5 4 10 10 C 1.50697 * 110.46862 * 142.85775 * 8 5 4 11 11 O 1.20820 * 120.00159 * 249.38087 * 10 8 5 12 12 O 1.34231 * 120.00070 * 69.37565 * 10 8 5 13 13 C 1.45204 * 116.99870 * 183.53526 * 12 10 8 14 14 C 1.50690 * 112.85073 * 54.18816 * 13 12 10 15 15 H 1.08002 * 120.00302 * 242.03384 * 14 13 12 16 16 C 1.37878 * 120.00249 * 62.04149 * 14 13 12 17 17 N 1.31521 * 119.99943 * 186.86546 * 16 14 13 18 18 Si 1.86802 * 119.99951 * 6.86257 * 16 14 13 19 19 H 1.48492 * 109.46958 * 93.73064 * 18 16 14 20 20 H 1.48503 * 109.46852 * 213.73132 * 18 16 14 21 21 H 1.48493 * 109.46954 * 333.73016 * 18 16 14 22 22 C 1.53778 * 113.61225 * 282.87802 * 13 12 10 23 23 C 1.53782 * 87.08212 * 220.02438 * 22 13 12 24 24 C 1.53780 * 87.07989 * 25.43266 * 23 22 13 25 25 O 1.44427 * 110.37063 * 122.25285 * 2 1 3 26 26 H 1.09001 * 109.47007 * 299.19673 * 1 2 3 27 27 H 1.08997 * 109.47439 * 59.20109 * 1 2 3 28 28 H 1.09006 * 109.47495 * 179.20315 * 1 2 3 29 29 H 1.08997 * 110.50990 * 335.78915 * 4 2 1 30 30 H 1.08994 * 110.50601 * 98.36157 * 4 2 1 31 31 H 1.08994 * 109.47534 * 174.64652 * 7 5 4 32 32 H 1.09005 * 109.46651 * 294.64771 * 7 5 4 33 33 H 1.08999 * 109.47144 * 54.64050 * 7 5 4 34 34 H 0.96996 * 120.00072 * 179.97438 * 17 16 14 35 35 H 1.09005 * 113.61753 * 334.56798 * 22 13 12 36 36 H 1.08996 * 113.61332 * 105.46956 * 22 13 12 37 37 H 1.08998 * 113.61292 * 270.88537 * 23 22 13 38 38 H 1.08997 * 113.61912 * 139.98300 * 23 22 13 39 39 H 1.09004 * 113.61554 * 220.01843 * 24 23 22 40 40 H 1.08997 * 113.69000 * 89.12987 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7737 -1.2232 5 6 3.3206 -1.5032 -0.6837 6 1 3.2002 -2.5830 -0.7707 7 6 4.5744 -1.0406 -1.4287 8 6 3.3879 -1.0846 0.8018 9 1 4.0514 -0.2287 0.9252 10 6 3.8554 -2.2366 1.6534 11 8 3.0888 -2.7729 2.4179 12 8 5.1236 -2.6671 1.5625 13 6 5.4831 -3.8304 2.3535 14 6 4.5796 -5.0102 2.1034 15 1 3.9829 -5.4136 2.9081 16 6 4.5147 -5.5747 0.8472 17 7 3.6301 -6.5143 0.5934 18 14 5.6833 -5.0051 -0.4943 19 1 6.8776 -5.8872 -0.5177 20 1 4.9957 -5.0677 -1.8091 21 1 6.1053 -3.6076 -0.2225 22 6 5.6953 -3.5197 3.8446 23 6 6.8874 -4.4899 3.7964 24 6 6.9801 -4.1772 2.2936 25 8 2.0327 -0.7225 1.1450 26 1 -0.3633 0.5013 0.8971 27 1 -0.3634 0.5262 -0.8827 28 1 -0.3634 -1.0276 -0.0143 29 1 1.3313 -1.4928 -1.5769 30 1 2.3427 -0.0836 -2.0216 31 1 5.4554 -1.4926 -0.9732 32 1 4.5091 -1.3447 -2.4735 33 1 4.6518 0.0451 -1.3706 34 1 3.5842 -6.9112 -0.2905 35 1 5.9813 -2.4860 4.0389 36 1 4.8798 -3.8612 4.4821 37 1 6.6178 -5.5239 4.0114 38 1 7.7511 -4.1493 4.3674 39 1 7.2019 -5.0497 1.6789 40 1 7.6172 -3.3236 2.0624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:16 Heat of formation + Delta-G solvation = -129.894731 kcal Electronic energy + Delta-G solvation = -22308.287603 eV Core-core repulsion = 19088.232603 eV Total energy + Delta-G solvation = -3220.055000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71625 -40.54597 -38.81001 -36.32113 -34.64690 -34.55175 -33.10466 -29.02235 -27.99919 -27.69838 -26.64468 -24.74137 -22.82244 -22.05890 -21.39692 -20.50736 -19.10781 -18.01733 -17.41830 -17.32567 -17.03112 -16.55657 -16.01174 -15.80579 -15.49932 -15.03522 -14.91021 -14.47335 -13.81510 -13.67615 -13.54168 -13.40639 -13.22030 -12.99661 -12.86849 -12.82955 -12.42429 -12.37484 -12.32869 -12.02130 -11.86622 -11.68049 -11.66889 -11.54877 -11.19133 -11.05242 -10.85354 -10.59380 -10.52284 -8.42782 -6.52799 1.24956 1.26906 1.50524 1.52130 1.77344 2.28453 2.89597 3.06408 3.40407 3.61498 3.78205 3.83613 3.88169 3.96516 4.06485 4.13257 4.15119 4.37004 4.37389 4.42835 4.57682 4.73570 4.77767 4.80262 4.82862 4.86192 4.97673 5.02459 5.10651 5.11996 5.14849 5.19524 5.24863 5.32141 5.51253 5.59486 5.77494 5.84829 6.30539 6.54942 7.12551 7.21924 8.72873 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.007961 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.527750 B = 3516.331436 C = 3893.961735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.104 0.896 4 C -0.138 4.138 5 C -0.118 4.118 6 H 0.041 0.959 7 C -0.141 4.141 8 C 0.089 3.911 9 H 0.133 0.867 10 C 0.451 3.549 11 O -0.522 6.522 12 O -0.358 6.358 13 C 0.177 3.823 14 C -0.505 4.505 15 H 0.022 0.978 16 C 0.023 3.977 17 N -0.934 5.934 18 Si 0.918 3.082 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.200 1.200 22 C -0.148 4.148 23 C -0.109 4.109 24 C -0.122 4.122 25 O -0.382 6.382 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.268 0.732 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 16.667 -6.173 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.003 3.997 3 H 0.122 0.878 4 C -0.175 4.175 5 C -0.137 4.137 6 H 0.060 0.940 7 C -0.198 4.198 8 C 0.030 3.970 9 H 0.150 0.850 10 C 0.293 3.707 11 O -0.409 6.409 12 O -0.276 6.276 13 C 0.143 3.857 14 C -0.542 4.542 15 H 0.041 0.959 16 C -0.176 4.176 17 N -0.573 5.573 18 Si 0.740 3.260 19 H -0.189 1.189 20 H -0.218 1.218 21 H -0.121 1.121 22 C -0.186 4.186 23 C -0.146 4.146 24 C -0.159 4.159 25 O -0.302 6.302 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.797 16.318 -5.818 17.736 hybrid contribution -0.426 -1.111 -0.266 1.219 sum 3.372 15.207 -6.084 16.723 Atomic orbital electron populations 1.21847 0.92172 1.02268 1.03903 1.23442 0.96388 0.96265 0.83618 0.87787 1.23128 0.95466 0.99892 0.99015 1.22441 0.99231 0.99915 0.92153 0.94026 1.21884 0.94647 1.03110 1.00185 1.22692 0.86743 0.94459 0.93061 0.84962 1.23541 0.81359 0.84179 0.81624 1.90618 1.55962 1.56417 1.37943 1.86479 1.28417 1.46787 1.65893 1.21776 0.93526 0.81651 0.88732 1.20810 1.24545 1.12450 0.96398 0.95930 1.25943 0.96464 0.94185 1.01026 1.70103 1.35657 1.28486 1.23074 0.86248 0.79295 0.83300 0.77195 1.18921 1.21837 1.12138 1.23384 0.98667 1.00087 0.96432 1.22416 0.97813 0.98930 0.95416 1.23302 0.93595 1.01256 0.97793 1.89233 1.25689 1.75244 1.40062 0.91808 0.87666 0.93938 0.91268 0.85925 0.92759 0.90686 0.88680 0.92362 0.88981 0.94365 0.91316 0.87555 0.92276 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.53 71.98 0.69 -2.45 16 2 C 0.06 1.45 3.92 31.10 0.12 1.58 16 3 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.14 -3.24 6.28 31.61 0.20 -3.04 16 5 C -0.12 -3.72 3.25 -9.78 -0.03 -3.75 16 6 H 0.04 1.70 7.87 -2.39 -0.02 1.68 16 7 C -0.14 -3.32 8.95 71.98 0.64 -2.68 16 8 C 0.09 3.18 3.37 30.35 0.10 3.28 16 9 H 0.13 3.65 7.87 -2.39 -0.02 3.63 16 10 C 0.45 21.50 6.79 71.23 0.48 21.98 16 11 O -0.52 -30.34 14.97 28.22 0.42 -29.92 16 12 O -0.36 -16.42 7.91 -51.43 -0.41 -16.83 16 13 C 0.18 8.58 0.25 -11.02 0.00 8.57 16 14 C -0.50 -30.49 7.07 25.60 0.18 -30.31 16 15 H 0.02 1.58 8.05 -2.91 -0.02 1.56 16 16 C 0.02 1.40 5.47 84.65 0.46 1.87 16 17 N -0.93 -60.79 13.96 21.45 0.30 -60.49 16 18 Si 0.92 43.63 24.77 68.60 1.70 45.33 16 19 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 21 H -0.20 -8.46 5.29 99.48 0.53 -7.93 16 22 C -0.15 -6.28 7.14 31.12 0.22 -6.06 16 23 C -0.11 -3.91 7.81 31.12 0.24 -3.66 16 24 C -0.12 -4.77 6.12 31.12 0.19 -4.58 16 25 O -0.38 -14.20 10.61 -130.62 -1.39 -15.59 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.11 8.13 -2.38 -0.02 1.09 16 29 H 0.07 1.76 7.86 -2.39 -0.02 1.74 16 30 H 0.12 1.85 7.74 -2.39 -0.02 1.83 16 31 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 32 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 35 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 36 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.11 2.85 8.14 -2.39 -0.02 2.84 16 39 H 0.06 2.42 5.98 -2.39 -0.01 2.41 16 40 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -81.33 318.71 4.95 -76.37 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.82 Total: 20.37 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 3.50 Total: -19.25 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.30 Total: -60.49 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -1.37 Total: -62.34 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.70 Total: 45.33 kcal Total: -81.33 4.95 -76.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.522 kcal (2) G-P(sol) polarization free energy of solvation -81.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds