Wall clock time and date at job start Mon Mar 30 2020 07:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.35167 * 2 1 4 4 C 1.54955 * 110.30641 * 237.86592 * 2 1 3 5 5 C 1.55311 * 100.93768 * 204.63838 * 4 2 1 6 6 H 1.09001 * 110.84421 * 152.32398 * 5 4 2 7 7 C 1.52994 * 110.84833 * 275.93795 * 5 4 2 8 8 C 1.54380 * 102.25399 * 34.13266 * 5 4 2 9 9 H 1.08994 * 109.90682 * 98.19768 * 8 5 4 10 10 C 1.50700 * 109.82908 * 219.13000 * 8 5 4 11 11 O 1.20824 * 119.99887 * 114.58607 * 10 8 5 12 12 O 1.34226 * 120.00000 * 294.31246 * 10 8 5 13 13 C 1.45194 * 117.00222 * 185.59876 * 12 10 8 14 14 C 1.50701 * 112.85392 * 54.30998 * 13 12 10 15 15 H 1.08000 * 120.00454 * 243.21527 * 14 13 12 16 16 C 1.37879 * 119.99456 * 63.20332 * 14 13 12 17 17 N 1.31508 * 120.00390 * 354.41061 * 16 14 13 18 18 Si 1.86800 * 119.99671 * 174.40713 * 16 14 13 19 19 H 1.48499 * 109.47381 * 60.00284 * 18 16 14 20 20 H 1.48505 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48512 * 109.47218 * 300.00360 * 18 16 14 22 22 C 1.53781 * 113.61400 * 283.00440 * 13 12 10 23 23 C 1.53785 * 87.08437 * 220.01691 * 22 13 12 24 24 C 1.53779 * 87.07852 * 25.43218 * 23 22 13 25 25 O 1.43236 * 107.58942 * 338.64011 * 8 5 4 26 26 H 1.09001 * 109.46996 * 299.30265 * 1 2 3 27 27 H 1.08995 * 109.47214 * 59.30627 * 1 2 3 28 28 H 1.09002 * 109.47157 * 179.30428 * 1 2 3 29 29 H 1.09001 * 111.11961 * 322.55103 * 4 2 1 30 30 H 1.08996 * 111.12895 * 86.71922 * 4 2 1 31 31 H 1.08993 * 109.47496 * 172.83316 * 7 5 4 32 32 H 1.09004 * 109.47302 * 292.83829 * 7 5 4 33 33 H 1.09006 * 109.47229 * 52.83347 * 7 5 4 34 34 H 0.97004 * 120.00136 * 185.01526 * 17 16 14 35 35 H 1.08993 * 113.61615 * 334.56855 * 22 13 12 36 36 H 1.08998 * 113.61324 * 105.47269 * 22 13 12 37 37 H 1.08998 * 113.61398 * 270.88434 * 23 22 13 38 38 H 1.08999 * 113.61613 * 139.97643 * 23 22 13 39 39 H 1.08997 * 113.61558 * 220.01580 * 24 23 22 40 40 H 1.09004 * 113.61656 * 89.11377 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0678 -0.7730 -1.2306 5 6 3.4700 -1.2025 -0.7192 6 1 3.7966 -2.1204 -1.2078 7 6 4.4911 -0.0817 -0.9241 8 6 3.2113 -1.4420 0.7838 9 1 3.0630 -2.5057 0.9699 10 6 4.3813 -0.9403 1.5902 11 8 4.2391 -0.0080 2.3455 12 8 5.5802 -1.5326 1.4735 13 6 6.6291 -1.0800 2.3696 14 6 6.2276 -1.1449 3.8207 15 1 6.1654 -0.2387 4.4050 16 6 5.9394 -2.3613 4.4024 17 7 5.9074 -3.4509 3.6668 18 14 5.5945 -2.4615 6.2356 19 1 4.4170 -1.6187 6.5646 20 1 5.3151 -3.8711 6.6103 21 1 6.7779 -1.9747 6.9893 22 6 7.2509 0.2657 1.9603 23 6 8.6103 -0.3288 2.3648 24 6 8.0011 -1.7120 2.0813 25 8 2.0287 -0.7169 1.1405 26 1 -0.3633 0.5030 0.8962 27 1 -0.3633 0.5245 -0.8836 28 1 -0.3633 -1.0276 -0.0125 29 1 1.4470 -1.6415 -1.4509 30 1 2.1495 -0.1202 -2.0996 31 1 5.4314 -0.3549 -0.4455 32 1 4.6566 0.0684 -1.9910 33 1 4.1127 0.8400 -0.4820 34 1 5.6339 -4.2941 4.0606 35 1 7.1674 0.4791 0.8947 36 1 6.9359 1.1006 2.5862 37 1 8.8620 -0.1692 3.4132 38 1 9.4222 -0.0623 1.6881 39 1 8.2917 -2.4737 2.8048 40 1 8.1226 -2.0394 1.0487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:23 Heat of formation + Delta-G solvation = -115.354455 kcal Electronic energy + Delta-G solvation = -22269.945521 eV Core-core repulsion = 19050.521035 eV Total energy + Delta-G solvation = -3219.424486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14569 -38.66548 -36.72138 -34.13482 -33.16835 -32.25440 -31.90098 -26.96376 -26.75258 -25.92957 -24.53068 -23.09838 -21.64599 -20.69565 -19.35263 -18.54751 -16.97859 -16.14889 -16.02940 -15.51532 -15.04252 -14.75449 -14.34346 -14.00492 -13.75300 -13.36988 -13.10566 -12.60823 -12.42533 -12.18900 -12.15954 -11.87692 -11.55462 -11.43548 -11.11463 -11.00708 -10.88283 -10.77560 -10.70259 -10.48395 -10.27267 -10.25042 -9.85637 -9.77887 -9.66506 -8.96831 -8.70700 -8.46251 -8.38837 -6.08252 -4.18237 3.30614 3.34979 3.40573 3.44794 3.86115 4.26965 4.39762 4.55474 4.80062 5.12393 5.13890 5.24428 5.35424 5.43453 5.61365 5.66437 5.72628 5.75192 5.79531 5.83934 5.93552 5.97878 6.02382 6.11494 6.19724 6.23760 6.29282 6.42536 6.52002 6.56716 6.67525 6.92323 7.12042 7.25336 7.33202 7.60291 7.82369 7.97572 8.44659 8.84868 9.35531 9.51613 10.96210 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.007398 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.151815 B = 3784.052207 C = 4601.281874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 H 0.069 0.931 4 C -0.148 4.148 5 C -0.109 4.109 6 H 0.097 0.903 7 C -0.157 4.157 8 C 0.088 3.912 9 H 0.108 0.892 10 C 0.461 3.539 11 O -0.494 6.494 12 O -0.348 6.348 13 C 0.242 3.758 14 C -0.510 4.510 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.865 5.865 18 Si 0.892 3.108 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.160 4.160 23 C -0.132 4.132 24 C -0.108 4.108 25 O -0.348 6.348 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 3.258 -10.844 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.087 0.913 4 C -0.185 4.185 5 C -0.127 4.127 6 H 0.116 0.884 7 C -0.214 4.214 8 C 0.028 3.972 9 H 0.126 0.874 10 C 0.301 3.699 11 O -0.381 6.381 12 O -0.265 6.265 13 C 0.208 3.792 14 C -0.548 4.548 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.502 5.502 18 Si 0.719 3.281 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.198 4.198 23 C -0.169 4.169 24 C -0.145 4.145 25 O -0.267 6.267 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.756 3.347 -10.384 11.902 hybrid contribution -0.209 -0.142 0.940 0.973 sum -4.965 3.205 -9.445 11.141 Atomic orbital electron populations 1.21855 0.93777 1.02667 1.02211 1.22994 0.94625 0.95944 0.85011 0.91279 1.23414 0.95859 1.00821 0.98434 1.22548 0.95825 1.00752 0.93596 0.88443 1.22003 0.99818 0.97841 1.01748 1.22374 0.84417 0.97244 0.93133 0.87429 1.22808 0.84482 0.81463 0.81125 1.90547 1.84366 1.27717 1.35471 1.86423 1.19502 1.62194 1.58416 1.21123 0.81377 0.88391 0.88279 1.20912 1.47968 0.93188 0.92698 0.91537 1.25046 0.94226 0.95523 0.98284 1.70013 1.44849 0.99448 1.35873 0.86641 0.79153 0.77058 0.85233 1.19952 1.21126 1.19895 1.23543 0.97147 0.99971 0.99122 1.22528 0.95387 0.98225 1.00774 1.22905 0.95558 0.96241 0.99836 1.88530 1.39635 1.64724 1.33848 0.91827 0.91449 0.91957 0.90132 0.89853 0.90385 0.92200 0.92479 0.92720 0.92202 0.92071 0.90276 0.93043 0.90743 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.62 37.16 0.36 -1.34 16 2 C 0.07 1.04 3.77 -25.70 -0.10 0.94 16 3 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 4 C -0.15 -1.76 6.07 -24.47 -0.15 -1.91 16 5 C -0.11 -1.61 3.59 -88.67 -0.32 -1.93 16 6 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 7 C -0.16 -2.37 8.22 37.15 0.31 -2.07 16 8 C 0.09 1.71 3.99 -27.16 -0.11 1.60 16 9 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 10 C 0.46 11.13 5.12 36.01 0.18 11.32 16 11 O -0.49 -13.53 14.96 -25.40 -0.38 -13.91 16 12 O -0.35 -8.72 8.64 -39.25 -0.34 -9.06 16 13 C 0.24 6.13 0.48 -90.96 -0.04 6.09 16 14 C -0.51 -14.38 6.53 -34.44 -0.22 -14.60 16 15 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 16 C 0.07 2.09 5.28 -17.82 -0.09 2.00 16 17 N -0.87 -24.54 12.67 55.43 0.70 -23.83 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.16 -3.55 7.09 -25.92 -0.18 -3.73 16 23 C -0.13 -2.66 7.81 -25.92 -0.20 -2.86 16 24 C -0.11 -2.46 7.24 -25.92 -0.19 -2.65 16 25 O -0.35 -6.81 10.25 -54.93 -0.56 -7.37 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 30 H 0.08 0.81 8.03 -51.93 -0.42 0.40 16 31 H 0.08 1.38 5.95 -51.93 -0.31 1.07 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.91 7.47 -51.93 -0.39 0.53 16 34 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 35 H 0.06 1.22 7.94 -51.93 -0.41 0.81 16 36 H 0.06 1.41 8.09 -51.93 -0.42 0.99 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.83 7.85 -51.93 -0.41 1.43 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -31.98 322.72 -8.02 -40.01 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.52 Total: 1.55 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.76 Total: -9.14 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.70 Total: -23.83 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.28 Total: -30.34 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.98 -8.02 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.348 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds