Wall clock time and date at job start Mon Mar 30 2020 07:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.35167 * 2 1 4 4 C 1.54955 * 110.30641 * 237.86592 * 2 1 3 5 5 C 1.55311 * 100.93768 * 204.63838 * 4 2 1 6 6 H 1.09001 * 110.84421 * 152.32398 * 5 4 2 7 7 C 1.52994 * 110.84833 * 275.93795 * 5 4 2 8 8 C 1.54380 * 102.25399 * 34.13266 * 5 4 2 9 9 H 1.08994 * 109.90682 * 98.19768 * 8 5 4 10 10 C 1.50700 * 109.82908 * 219.13000 * 8 5 4 11 11 O 1.20824 * 119.99887 * 114.58607 * 10 8 5 12 12 O 1.34226 * 120.00000 * 294.31246 * 10 8 5 13 13 C 1.45194 * 117.00222 * 185.59876 * 12 10 8 14 14 C 1.50701 * 112.85392 * 54.30998 * 13 12 10 15 15 H 1.08000 * 120.00454 * 243.21527 * 14 13 12 16 16 C 1.37879 * 119.99456 * 63.20332 * 14 13 12 17 17 N 1.31508 * 120.00390 * 354.41061 * 16 14 13 18 18 Si 1.86800 * 119.99671 * 174.40713 * 16 14 13 19 19 H 1.48499 * 109.47381 * 60.00284 * 18 16 14 20 20 H 1.48505 * 109.47183 * 180.02562 * 18 16 14 21 21 H 1.48512 * 109.47218 * 300.00360 * 18 16 14 22 22 C 1.53781 * 113.61400 * 283.00440 * 13 12 10 23 23 C 1.53785 * 87.08437 * 220.01691 * 22 13 12 24 24 C 1.53779 * 87.07852 * 25.43218 * 23 22 13 25 25 O 1.43236 * 107.58942 * 338.64011 * 8 5 4 26 26 H 1.09001 * 109.46996 * 299.30265 * 1 2 3 27 27 H 1.08995 * 109.47214 * 59.30627 * 1 2 3 28 28 H 1.09002 * 109.47157 * 179.30428 * 1 2 3 29 29 H 1.09001 * 111.11961 * 322.55103 * 4 2 1 30 30 H 1.08996 * 111.12895 * 86.71922 * 4 2 1 31 31 H 1.08993 * 109.47496 * 172.83316 * 7 5 4 32 32 H 1.09004 * 109.47302 * 292.83829 * 7 5 4 33 33 H 1.09006 * 109.47229 * 52.83347 * 7 5 4 34 34 H 0.97004 * 120.00136 * 185.01526 * 17 16 14 35 35 H 1.08993 * 113.61615 * 334.56855 * 22 13 12 36 36 H 1.08998 * 113.61324 * 105.47269 * 22 13 12 37 37 H 1.08998 * 113.61398 * 270.88434 * 23 22 13 38 38 H 1.08999 * 113.61613 * 139.97643 * 23 22 13 39 39 H 1.08997 * 113.61558 * 220.01580 * 24 23 22 40 40 H 1.09004 * 113.61656 * 89.11377 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0678 -0.7730 -1.2306 5 6 3.4700 -1.2025 -0.7192 6 1 3.7966 -2.1204 -1.2078 7 6 4.4911 -0.0817 -0.9241 8 6 3.2113 -1.4420 0.7838 9 1 3.0630 -2.5057 0.9699 10 6 4.3813 -0.9403 1.5902 11 8 4.2391 -0.0080 2.3455 12 8 5.5802 -1.5326 1.4735 13 6 6.6291 -1.0800 2.3696 14 6 6.2276 -1.1449 3.8207 15 1 6.1654 -0.2387 4.4050 16 6 5.9394 -2.3613 4.4024 17 7 5.9074 -3.4509 3.6668 18 14 5.5945 -2.4615 6.2356 19 1 4.4170 -1.6187 6.5646 20 1 5.3151 -3.8711 6.6103 21 1 6.7779 -1.9747 6.9893 22 6 7.2509 0.2657 1.9603 23 6 8.6103 -0.3288 2.3648 24 6 8.0011 -1.7120 2.0813 25 8 2.0287 -0.7169 1.1405 26 1 -0.3633 0.5030 0.8962 27 1 -0.3633 0.5245 -0.8836 28 1 -0.3633 -1.0276 -0.0125 29 1 1.4470 -1.6415 -1.4509 30 1 2.1495 -0.1202 -2.0996 31 1 5.4314 -0.3549 -0.4455 32 1 4.6566 0.0684 -1.9910 33 1 4.1127 0.8400 -0.4820 34 1 5.6339 -4.2941 4.0606 35 1 7.1674 0.4791 0.8947 36 1 6.9359 1.1006 2.5862 37 1 8.8620 -0.1692 3.4132 38 1 9.4222 -0.0623 1.6881 39 1 8.2917 -2.4737 2.8048 40 1 8.1226 -2.0394 1.0487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:23 Heat of formation + Delta-G solvation = -133.802814 kcal Electronic energy + Delta-G solvation = -22270.745502 eV Core-core repulsion = 19050.521035 eV Total energy + Delta-G solvation = -3220.224467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69502 -40.33845 -38.54982 -36.02892 -34.51925 -34.34316 -33.05937 -28.56579 -27.96521 -27.68319 -26.34718 -24.88109 -23.04027 -21.85298 -20.97138 -20.48318 -18.80216 -17.70770 -17.49455 -17.12464 -16.89475 -16.71431 -16.02930 -15.60127 -15.34038 -14.84098 -14.40763 -14.14699 -13.87030 -13.54938 -13.37744 -13.32911 -13.05364 -12.99745 -12.89045 -12.79002 -12.59504 -12.16931 -12.12320 -12.09362 -11.87101 -11.80019 -11.63007 -11.50891 -11.14676 -10.83762 -10.73326 -10.38751 -10.26174 -8.21978 -6.37134 1.31583 1.33573 1.41112 1.68153 2.20289 2.34469 2.88409 3.10228 3.37805 3.68991 3.88205 3.98903 4.01086 4.07769 4.18279 4.28003 4.34734 4.40271 4.50739 4.55855 4.63881 4.78169 4.80007 4.85033 4.88559 4.93283 5.00034 5.10789 5.12765 5.14844 5.29773 5.34380 5.36070 5.44541 5.62101 5.77749 5.95324 6.03083 6.48650 6.65111 7.29980 7.48905 8.81538 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.007398 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.151815 B = 3784.052207 C = 4601.281874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.104 4.104 6 H 0.119 0.881 7 C -0.154 4.154 8 C 0.085 3.915 9 H 0.105 0.895 10 C 0.455 3.545 11 O -0.539 6.539 12 O -0.352 6.352 13 C 0.215 3.785 14 C -0.527 4.527 15 H 0.042 0.958 16 C 0.034 3.966 17 N -0.885 5.885 18 Si 0.942 3.058 19 H -0.288 1.288 20 H -0.273 1.273 21 H -0.262 1.262 22 C -0.154 4.154 23 C -0.112 4.112 24 C -0.104 4.104 25 O -0.381 6.381 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 3.094 -13.106 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.001 4.001 3 H 0.077 0.923 4 C -0.166 4.166 5 C -0.122 4.122 6 H 0.137 0.863 7 C -0.211 4.211 8 C 0.026 3.974 9 H 0.123 0.877 10 C 0.298 3.702 11 O -0.429 6.429 12 O -0.269 6.269 13 C 0.181 3.819 14 C -0.565 4.565 15 H 0.060 0.940 16 C -0.169 4.169 17 N -0.522 5.522 18 Si 0.767 3.233 19 H -0.214 1.214 20 H -0.197 1.197 21 H -0.186 1.186 22 C -0.191 4.191 23 C -0.149 4.149 24 C -0.142 4.142 25 O -0.301 6.301 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.028 3.175 -12.659 13.986 hybrid contribution -0.172 -0.029 1.635 1.644 sum -5.199 3.146 -11.023 12.588 Atomic orbital electron populations 1.21860 0.91426 1.03383 1.03220 1.23371 0.96478 0.95361 0.84917 0.92334 1.23412 0.93516 1.01732 0.97922 1.22637 0.97758 1.01692 0.90140 0.86325 1.21965 0.98291 0.97065 1.03731 1.22483 0.82703 0.96643 0.95577 0.87697 1.23841 0.85142 0.80572 0.80642 1.90509 1.84978 1.29777 1.37653 1.86404 1.20143 1.62289 1.58072 1.21368 0.82239 0.90997 0.87285 1.21011 1.48569 0.92402 0.94494 0.94020 1.25645 0.94229 0.95328 1.01733 1.70075 1.45447 0.99618 1.37029 0.85869 0.78716 0.77340 0.81333 1.21406 1.19728 1.18614 1.23478 0.97990 0.97843 0.99814 1.22448 0.95478 0.95575 1.01395 1.22871 0.94294 0.96925 1.00103 1.88508 1.39370 1.65204 1.37031 0.93139 0.88075 0.91412 0.87961 0.86619 0.93336 0.88355 0.94178 0.92590 0.90370 0.93996 0.90944 0.88828 0.93100 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.62 71.98 0.69 -2.25 16 2 C 0.06 1.52 3.77 31.26 0.12 1.63 16 3 H 0.06 1.70 7.73 -2.39 -0.02 1.68 16 4 C -0.13 -2.60 6.07 32.06 0.19 -2.41 16 5 C -0.10 -2.85 3.59 -9.53 -0.03 -2.88 16 6 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 7 C -0.15 -4.39 8.22 71.98 0.59 -3.79 16 8 C 0.09 3.34 3.99 30.32 0.12 3.46 16 9 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 10 C 0.45 22.62 5.12 71.24 0.36 22.99 16 11 O -0.54 -30.93 14.96 28.33 0.42 -30.51 16 12 O -0.35 -18.00 8.64 -51.38 -0.44 -18.44 16 13 C 0.22 11.11 0.48 -11.01 -0.01 11.10 16 14 C -0.53 -30.74 6.53 25.60 0.17 -30.57 16 15 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 16 C 0.03 1.94 5.28 84.66 0.45 2.38 16 17 N -0.88 -51.03 12.67 21.45 0.27 -50.76 16 18 Si 0.94 45.90 29.54 68.60 2.03 47.92 16 19 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 22 C -0.15 -6.82 7.09 31.12 0.22 -6.60 16 23 C -0.11 -4.37 7.81 31.12 0.24 -4.12 16 24 C -0.10 -4.73 7.24 31.12 0.23 -4.51 16 25 O -0.38 -15.05 10.25 -130.15 -1.33 -16.39 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.68 8.06 -2.39 -0.02 1.66 16 30 H 0.12 1.65 8.03 -2.39 -0.02 1.63 16 31 H 0.05 1.67 5.95 -2.39 -0.01 1.66 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.26 7.47 -2.38 -0.02 1.24 16 34 H 0.26 14.54 8.32 -92.70 -0.77 13.77 16 35 H 0.08 3.14 7.94 -2.39 -0.02 3.12 16 36 H 0.04 1.98 8.09 -2.39 -0.02 1.96 16 37 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.05 2.52 7.85 -2.39 -0.02 2.50 16 40 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -72.88 322.72 5.30 -67.58 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 1.01 Total: 16.15 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 3.35 Total: -15.56 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.27 Total: -50.76 kcal Atomic # 8 Polarization: -63.98 SS G_CDS: -1.35 Total: -65.34 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -72.88 5.30 -67.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.221 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds