Wall clock time and date at job start Mon Mar 30 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47604 * 2 1 4 4 O 1.42904 * 109.47213 * 120.00762 * 2 1 3 5 5 C 1.42897 * 113.99655 * 269.99630 * 4 2 1 6 6 C 1.52994 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.53000 * 117.50483 * 243.74990 * 6 5 4 8 8 C 1.52998 * 117.50277 * 175.08669 * 6 5 4 9 9 C 1.50702 * 109.46975 * 240.00245 * 2 1 3 10 10 O 1.20823 * 120.00304 * 244.99986 * 9 2 1 11 11 O 1.34228 * 119.99881 * 65.00213 * 9 2 1 12 12 C 1.45207 * 117.00095 * 177.67386 * 11 9 2 13 13 C 1.50703 * 112.84679 * 65.19429 * 12 11 9 14 14 H 1.08003 * 119.99877 * 242.64290 * 13 12 11 15 15 C 1.37881 * 119.99927 * 62.64893 * 13 12 11 16 16 N 1.31515 * 119.99943 * 353.75524 * 15 13 12 17 17 Si 1.86801 * 119.99951 * 173.75612 * 15 13 12 18 18 H 1.48495 * 109.46985 * 89.99868 * 17 15 13 19 19 H 1.48496 * 109.47166 * 209.99899 * 17 15 13 20 20 H 1.48502 * 109.46826 * 329.99707 * 17 15 13 21 21 C 1.53782 * 113.61317 * 293.99990 * 12 11 9 22 22 C 1.53952 * 87.01603 * 220.04619 * 21 12 11 23 23 C 1.53778 * 113.61250 * 196.39065 * 12 11 9 24 24 H 1.09003 * 109.47181 * 59.99276 * 1 2 3 25 25 H 1.08992 * 109.47644 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47094 * 299.99941 * 1 2 3 27 27 H 1.09006 * 109.47415 * 300.00008 * 5 4 2 28 28 H 1.09005 * 109.47335 * 59.99720 * 5 4 2 29 29 H 1.09005 * 115.55016 * 29.41714 * 6 5 4 30 30 H 1.09004 * 117.49434 * 359.97438 * 7 6 5 31 31 H 1.08998 * 117.50602 * 145.01435 * 7 6 5 32 32 H 1.09002 * 117.50411 * 214.98330 * 8 6 5 33 33 H 1.09002 * 117.50056 * 0.02562 * 8 6 5 34 34 H 0.96997 * 119.99663 * 185.02611 * 16 15 13 35 35 H 1.08995 * 113.61211 * 334.56677 * 21 12 11 36 36 H 1.08999 * 113.61208 * 105.46767 * 21 12 11 37 37 H 1.09005 * 113.53958 * 270.81303 * 22 21 12 38 38 H 1.09003 * 113.74169 * 139.94439 * 22 21 12 39 39 H 1.09001 * 113.61506 * 254.52408 * 23 12 11 40 40 H 1.08997 * 113.61569 * 25.35027 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2001 0.1827 2.2940 6 6 2.7079 -0.6411 3.4791 7 6 1.8106 -0.7281 4.7153 8 6 3.0878 0.1148 4.7539 9 6 2.0322 -0.7104 -1.2305 10 8 2.6505 -1.7427 -1.1221 11 8 1.7928 -0.1961 -2.4470 12 6 2.3507 -0.9060 -3.5843 13 6 1.7549 -2.2781 -3.7673 14 1 2.3815 -3.1540 -3.6866 15 6 0.4098 -2.4151 -4.0379 16 7 -0.3762 -1.3610 -4.0150 17 14 -0.2959 -4.0980 -4.4369 18 1 -0.7343 -4.7610 -3.1826 19 1 -1.4584 -3.9439 -5.3479 20 1 0.7442 -4.9269 -5.0976 21 6 3.8879 -0.8913 -3.6258 22 6 3.7647 -0.6909 -5.1473 23 6 2.3837 -0.0714 -4.8755 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.9320 0.9511 2.0450 28 1 1.2538 0.6545 2.5589 29 1 3.2967 -1.5216 3.2217 30 1 0.8587 -0.1980 4.6845 31 1 1.8093 -1.6656 5.2714 32 1 3.9263 -0.2685 5.3354 33 1 2.9756 1.1990 4.7485 34 1 -1.3331 -1.4670 -4.1331 35 1 4.3305 -0.0406 -3.1078 36 1 4.3413 -1.8419 -3.3450 37 1 3.7217 -1.6251 -5.7074 38 1 4.4870 0.0153 -5.5568 39 1 1.6246 -0.3611 -5.6022 40 1 2.4129 1.0039 -4.6997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810860871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:32 Heat of formation + Delta-G solvation = -86.080748 kcal Electronic energy + Delta-G solvation = -21281.163824 eV Core-core repulsion = 18063.008741 eV Total energy + Delta-G solvation = -3218.155083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.44847 -38.37186 -37.16899 -36.13971 -34.08415 -32.27373 -31.08661 -26.98021 -26.21273 -24.56571 -24.19250 -22.63424 -22.46633 -20.80152 -19.73141 -18.53876 -17.15073 -16.56299 -16.06344 -15.37481 -15.11252 -14.94315 -14.69915 -14.27183 -14.05269 -13.83596 -13.21258 -12.65632 -12.54670 -12.05980 -11.75252 -11.67532 -11.56981 -11.42717 -11.09115 -11.01676 -10.86343 -10.72389 -10.55709 -10.40898 -10.30756 -10.26174 -9.86794 -9.79574 -9.48321 -9.05693 -8.73715 -8.49973 -8.47848 -6.09451 -4.20474 3.22630 3.31257 3.35283 3.39370 3.53618 3.74310 4.33204 4.38329 4.75065 4.79020 5.03830 5.18604 5.23363 5.27840 5.44484 5.47908 5.54151 5.65173 5.65829 5.75284 5.77256 5.88880 5.96546 6.00418 6.06881 6.21147 6.23227 6.45151 6.51753 6.64240 6.64938 6.93666 7.11699 7.28897 7.37099 7.58430 7.81215 7.97085 8.38534 8.83328 9.28517 9.49642 10.94914 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.005299 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.979530 B = 5282.532347 C = 5894.803059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 H 0.082 0.918 4 O -0.357 6.357 5 C 0.091 3.909 6 C -0.149 4.149 7 C -0.178 4.178 8 C -0.176 4.176 9 C 0.462 3.538 10 O -0.493 6.493 11 O -0.343 6.343 12 C 0.241 3.759 13 C -0.512 4.512 14 H 0.067 0.933 15 C 0.077 3.923 16 N -0.861 5.861 17 Si 0.892 3.108 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.160 4.160 22 C -0.131 4.131 23 C -0.107 4.107 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 6.334 10.499 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.100 0.900 4 O -0.276 6.276 5 C 0.014 3.986 6 C -0.167 4.167 7 C -0.215 4.215 8 C -0.213 4.213 9 C 0.302 3.698 10 O -0.380 6.380 11 O -0.259 6.259 12 C 0.207 3.793 13 C -0.550 4.550 14 H 0.086 0.914 15 C -0.129 4.129 16 N -0.497 5.497 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.198 4.198 22 C -0.169 4.169 23 C -0.145 4.145 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.062 5.892 10.374 12.317 hybrid contribution -0.557 -0.714 -0.065 0.908 sum 2.505 5.178 10.310 11.806 Atomic orbital electron populations 1.22099 0.93119 1.03880 1.02707 1.21501 0.95429 0.95426 0.84105 0.89988 1.88026 1.86711 1.34057 1.18757 1.22058 0.98809 0.92044 0.85645 1.22133 1.03856 1.02437 0.88303 1.23069 0.94868 1.02024 1.01513 1.22973 0.99283 0.98754 1.00260 1.22486 0.77891 0.84221 0.85194 1.90561 1.37467 1.22560 1.87427 1.86460 1.70614 1.54803 1.14059 1.21210 0.86758 0.91350 0.79932 1.20950 0.94358 0.90738 1.48915 0.91449 1.25054 0.97125 0.96802 0.93931 1.70032 1.04125 1.28598 1.46979 0.86581 0.78715 0.84321 0.78492 1.20475 1.21007 1.19516 1.23561 0.99828 1.00498 0.95877 1.22568 0.97448 1.00553 0.96320 1.22896 0.95941 0.97496 0.98131 0.89608 0.91319 0.92469 0.92960 0.93163 0.86621 0.88709 0.88682 0.88515 0.88759 0.92796 0.92298 0.91788 0.90220 0.92994 0.90709 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.50 37.15 0.35 -2.44 16 2 C 0.09 1.78 3.24 -27.89 -0.09 1.69 16 3 H 0.08 1.30 7.79 -51.93 -0.40 0.89 16 4 O -0.36 -6.62 9.53 -55.14 -0.53 -7.15 16 5 C 0.09 1.23 6.03 37.15 0.22 1.46 16 6 C -0.15 -1.82 6.05 -90.62 -0.55 -2.37 16 7 C -0.18 -1.79 10.18 -26.69 -0.27 -2.07 16 8 C -0.18 -1.63 10.25 -26.69 -0.27 -1.90 16 9 C 0.46 11.16 6.85 36.01 0.25 11.41 16 10 O -0.49 -13.44 14.95 -25.46 -0.38 -13.82 16 11 O -0.34 -8.71 9.76 -39.25 -0.38 -9.10 16 12 C 0.24 6.15 0.47 -90.96 -0.04 6.11 16 13 C -0.51 -14.34 7.08 -34.44 -0.24 -14.58 16 14 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 15 C 0.08 2.12 5.29 -17.82 -0.09 2.02 16 16 N -0.86 -24.00 12.77 55.43 0.71 -23.29 16 17 Si 0.89 21.50 29.55 -169.99 -5.02 16.47 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.16 -3.61 6.56 -25.83 -0.17 -3.78 16 22 C -0.13 -2.66 7.81 -25.83 -0.20 -2.86 16 23 C -0.11 -2.44 7.28 -25.92 -0.19 -2.63 16 24 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 27 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 28 H 0.05 0.60 7.60 -51.93 -0.39 0.20 16 29 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.09 0.89 8.03 -51.93 -0.42 0.48 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.50 8.09 -51.93 -0.42 1.08 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.82 7.96 -51.93 -0.41 1.41 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -31.50 337.46 -8.47 -39.97 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.65 Total: 1.77 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.30 Total: -9.95 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.71 Total: -23.29 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.29 Total: -30.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.50 -8.47 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.109 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds