Wall clock time and date at job start Mon Mar 30 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47604 * 2 1 4 4 O 1.42904 * 109.47213 * 120.00762 * 2 1 3 5 5 C 1.42897 * 113.99655 * 269.99630 * 4 2 1 6 6 C 1.52994 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.53000 * 117.50483 * 243.74990 * 6 5 4 8 8 C 1.52998 * 117.50277 * 175.08669 * 6 5 4 9 9 C 1.50702 * 109.46975 * 240.00245 * 2 1 3 10 10 O 1.20823 * 120.00304 * 244.99986 * 9 2 1 11 11 O 1.34228 * 119.99881 * 65.00213 * 9 2 1 12 12 C 1.45207 * 117.00095 * 177.67386 * 11 9 2 13 13 C 1.50703 * 112.84679 * 65.19429 * 12 11 9 14 14 H 1.08003 * 119.99877 * 242.64290 * 13 12 11 15 15 C 1.37881 * 119.99927 * 62.64893 * 13 12 11 16 16 N 1.31515 * 119.99943 * 353.75524 * 15 13 12 17 17 Si 1.86801 * 119.99951 * 173.75612 * 15 13 12 18 18 H 1.48495 * 109.46985 * 89.99868 * 17 15 13 19 19 H 1.48496 * 109.47166 * 209.99899 * 17 15 13 20 20 H 1.48502 * 109.46826 * 329.99707 * 17 15 13 21 21 C 1.53782 * 113.61317 * 293.99990 * 12 11 9 22 22 C 1.53952 * 87.01603 * 220.04619 * 21 12 11 23 23 C 1.53778 * 113.61250 * 196.39065 * 12 11 9 24 24 H 1.09003 * 109.47181 * 59.99276 * 1 2 3 25 25 H 1.08992 * 109.47644 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47094 * 299.99941 * 1 2 3 27 27 H 1.09006 * 109.47415 * 300.00008 * 5 4 2 28 28 H 1.09005 * 109.47335 * 59.99720 * 5 4 2 29 29 H 1.09005 * 115.55016 * 29.41714 * 6 5 4 30 30 H 1.09004 * 117.49434 * 359.97438 * 7 6 5 31 31 H 1.08998 * 117.50602 * 145.01435 * 7 6 5 32 32 H 1.09002 * 117.50411 * 214.98330 * 8 6 5 33 33 H 1.09002 * 117.50056 * 0.02562 * 8 6 5 34 34 H 0.96997 * 119.99663 * 185.02611 * 16 15 13 35 35 H 1.08995 * 113.61211 * 334.56677 * 21 12 11 36 36 H 1.08999 * 113.61208 * 105.46767 * 21 12 11 37 37 H 1.09005 * 113.53958 * 270.81303 * 22 21 12 38 38 H 1.09003 * 113.74169 * 139.94439 * 22 21 12 39 39 H 1.09001 * 113.61506 * 254.52408 * 23 12 11 40 40 H 1.08997 * 113.61569 * 25.35027 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2001 0.1827 2.2940 6 6 2.7079 -0.6411 3.4791 7 6 1.8106 -0.7281 4.7153 8 6 3.0878 0.1148 4.7539 9 6 2.0322 -0.7104 -1.2305 10 8 2.6505 -1.7427 -1.1221 11 8 1.7928 -0.1961 -2.4470 12 6 2.3507 -0.9060 -3.5843 13 6 1.7549 -2.2781 -3.7673 14 1 2.3815 -3.1540 -3.6866 15 6 0.4098 -2.4151 -4.0379 16 7 -0.3762 -1.3610 -4.0150 17 14 -0.2959 -4.0980 -4.4369 18 1 -0.7343 -4.7610 -3.1826 19 1 -1.4584 -3.9439 -5.3479 20 1 0.7442 -4.9269 -5.0976 21 6 3.8879 -0.8913 -3.6258 22 6 3.7647 -0.6909 -5.1473 23 6 2.3837 -0.0714 -4.8755 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.9320 0.9511 2.0450 28 1 1.2538 0.6545 2.5589 29 1 3.2967 -1.5216 3.2217 30 1 0.8587 -0.1980 4.6845 31 1 1.8093 -1.6656 5.2714 32 1 3.9263 -0.2685 5.3354 33 1 2.9756 1.1990 4.7485 34 1 -1.3331 -1.4670 -4.1331 35 1 4.3305 -0.0406 -3.1078 36 1 4.3413 -1.8419 -3.3450 37 1 3.7217 -1.6251 -5.7074 38 1 4.4870 0.0153 -5.5568 39 1 1.6246 -0.3611 -5.6022 40 1 2.4129 1.0039 -4.6997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810860871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:32 Heat of formation + Delta-G solvation = -103.104823 kcal Electronic energy + Delta-G solvation = -21281.902043 eV Core-core repulsion = 18063.008741 eV Total energy + Delta-G solvation = -3218.893302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26057 -39.74142 -38.66476 -37.42008 -36.02451 -34.37193 -32.51254 -28.23739 -28.04870 -26.38662 -25.89983 -24.32079 -23.23645 -21.83719 -21.34158 -20.46353 -18.87534 -18.00469 -17.72980 -17.03550 -16.84995 -16.45429 -16.27853 -15.81188 -15.61613 -15.18888 -14.77338 -14.34804 -13.90718 -13.59600 -13.48510 -13.14215 -12.97690 -12.95496 -12.79157 -12.66176 -12.37268 -12.26628 -12.11202 -11.98518 -11.78667 -11.64595 -11.42774 -11.31649 -10.99611 -10.78473 -10.59364 -10.43140 -10.35450 -8.19306 -6.36170 1.33673 1.36050 1.45801 1.64758 1.86906 2.35832 2.77965 3.00174 3.15238 3.80055 3.90766 3.95015 3.96110 4.00025 4.04153 4.11459 4.17102 4.31811 4.35718 4.49261 4.57496 4.68165 4.73277 4.78455 4.80428 4.84674 4.92948 5.01522 5.15076 5.19861 5.24379 5.26126 5.36281 5.43414 5.63258 5.75959 6.00088 6.15825 6.42950 6.67195 7.29962 7.43541 8.84375 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.005299 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.979530 B = 5282.532347 C = 5894.803059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.103 3.897 3 H 0.118 0.882 4 O -0.387 6.387 5 C 0.085 3.915 6 C -0.180 4.180 7 C -0.175 4.175 8 C -0.153 4.153 9 C 0.450 3.550 10 O -0.536 6.536 11 O -0.351 6.351 12 C 0.213 3.787 13 C -0.532 4.532 14 H 0.043 0.957 15 C 0.038 3.962 16 N -0.879 5.879 17 Si 0.944 3.056 18 H -0.285 1.285 19 H -0.269 1.269 20 H -0.268 1.268 21 C -0.156 4.156 22 C -0.111 4.111 23 C -0.103 4.103 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 7.986 11.455 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.044 3.956 3 H 0.136 0.864 4 O -0.307 6.307 5 C 0.010 3.990 6 C -0.199 4.199 7 C -0.212 4.212 8 C -0.189 4.189 9 C 0.292 3.708 10 O -0.426 6.426 11 O -0.267 6.267 12 C 0.179 3.821 13 C -0.569 4.569 14 H 0.061 0.939 15 C -0.166 4.166 16 N -0.516 5.516 17 Si 0.769 3.231 18 H -0.212 1.212 19 H -0.194 1.194 20 H -0.193 1.193 21 C -0.193 4.193 22 C -0.148 4.148 23 C -0.140 4.140 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.027 7.561 11.331 13.954 hybrid contribution -0.511 -1.231 -0.265 1.359 sum 2.516 6.330 11.066 12.994 Atomic orbital electron populations 1.22035 0.92014 1.02478 1.04332 1.21497 0.95984 0.96057 0.82080 0.86402 1.88006 1.86868 1.36108 1.19698 1.22363 1.00402 0.91992 0.84265 1.22096 1.05804 1.02790 0.89174 1.23181 0.95630 1.02673 0.99733 1.23092 0.99048 0.99544 0.97263 1.23663 0.76835 0.84004 0.86252 1.90528 1.39470 1.24610 1.87979 1.86439 1.70788 1.54673 1.14801 1.21481 0.88473 0.91079 0.81040 1.21027 0.94735 0.91418 1.49754 0.93891 1.25640 0.97306 0.99842 0.93793 1.70088 1.04305 1.29834 1.47342 0.85782 0.78443 0.80760 0.78111 1.21167 1.19415 1.19250 1.23508 0.97775 1.00095 0.97957 1.22486 0.96689 1.01036 0.94592 1.22859 0.96827 0.98190 0.96158 0.90620 0.94179 0.88096 0.91661 0.90934 0.89054 0.87702 0.88351 0.87453 0.87010 0.92541 0.90789 0.93767 0.90754 0.88843 0.92844 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.50 71.98 0.68 -4.41 16 2 C 0.10 3.77 3.24 29.85 0.10 3.87 16 3 H 0.12 3.44 7.79 -2.39 -0.02 3.42 16 4 O -0.39 -14.18 9.53 -129.95 -1.24 -15.42 16 5 C 0.09 2.14 6.03 71.98 0.43 2.58 16 6 C -0.18 -4.19 6.05 -10.80 -0.07 -4.26 16 7 C -0.18 -3.16 10.18 30.62 0.31 -2.85 16 8 C -0.15 -2.42 10.25 30.62 0.31 -2.11 16 9 C 0.45 22.07 6.85 71.24 0.49 22.56 16 10 O -0.54 -30.30 14.95 28.39 0.42 -29.87 16 11 O -0.35 -18.00 9.76 -51.39 -0.50 -18.50 16 12 C 0.21 11.01 0.47 -11.01 -0.01 11.01 16 13 C -0.53 -30.64 7.08 25.60 0.18 -30.46 16 14 H 0.04 2.61 7.81 -2.91 -0.02 2.58 16 15 C 0.04 2.14 5.29 84.66 0.45 2.59 16 16 N -0.88 -49.57 12.77 21.45 0.27 -49.29 16 17 Si 0.94 44.82 29.55 68.60 2.03 46.84 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 C -0.16 -7.01 6.56 31.18 0.20 -6.81 16 22 C -0.11 -4.33 7.81 31.18 0.24 -4.08 16 23 C -0.10 -4.63 7.28 31.12 0.23 -4.40 16 24 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.10 2.48 7.87 -2.39 -0.02 2.46 16 27 H 0.07 1.44 8.09 -2.38 -0.02 1.42 16 28 H 0.07 1.48 7.60 -2.38 -0.02 1.46 16 29 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.10 1.68 8.03 -2.39 -0.02 1.66 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.27 14.16 8.32 -92.71 -0.77 13.38 16 35 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.04 2.12 8.09 -2.39 -0.02 2.10 16 37 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 38 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.05 2.61 7.96 -2.39 -0.02 2.59 16 40 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -70.52 337.46 5.55 -64.98 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.00 Total: 18.05 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 3.56 Total: -16.78 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.27 Total: -49.29 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -1.31 Total: -63.80 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -70.52 5.55 -64.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.130 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds